Variant #0000315716 (NC_000005.9:g.179250906C>T, NM_003900.4:c.350C>T (SQSTM1))

Chromosome 5
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.179250906C>T
DNA change (hg38) g.179823906C>T
Published as SQSTM1(NM_001142298.1):c.98C>T (p.A33V), SQSTM1(NM_003900.5):c.350C>T (p.A117V)
ISCN -
DB-ID SQSTM1_000011 See all 3 reported entries
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00157 View details
Owner VKGL-NL_Rotterdam
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Rotterdam
Date created 2018-01-15 20:58:59 +01:00 (CET)
Date last edited 2019-12-04 15:24:38 +01:00 (CET)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
SQSTM1 NM_003900.4 -?/. - c.350C>T r.(?) p.(Ala117Val)
MGAT4B NM_014275.4 -?/. - c.-17323G>A r.(?) p.(=)
C5orf45 NM_016175.3 -?/. - c.*13485G>A r.(=) p.(=)


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