Variant #0000330580 (NC_000005.9:g.140250309G>T, NC_000005.9(NM_018900.2):c.2394+82040G>T (PCDHA1))

Chromosome 5
Allele Unknown
Affects function (as reported) Effect unknown
Affects function (by curator) Not classified
Classification method -
Clinical classification VUS
DNA change (genomic) (Relative to hg19 / GRCh37) g.140250309G>T
DNA change (hg38) -
Published as PCDHA11(NM_018902.4):c.1621G>T (p.(Val541Leu))
ISCN -
DB-ID PCDHA1_000020
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00105 View details
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2018-01-15 20:58:59 +01:00 (CET)
Date last edited 2020-03-23 16:13:27 +01:00 (CET)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PCDHAC1 NM_018898.3 ?/. - c.-56169G>T r.(?) p.(=)
PCDHAC2 NM_018899.5 ?/. - c.-96043G>T r.(?) p.(=)
PCDHA1 NM_018900.2 ?/. - c.2394+82040G>T r.(=) p.(=)
PCDHA10 NM_018901.2 ?/. - c.2388+12288G>T r.(=) p.(=)
PCDHA11 NM_018902.3 ?/. - c.1621G>T r.(?) p.(Val541Leu)
PCDHA12 NM_018903.2 ?/. - c.-4749G>T r.(?) p.(=)
PCDHA13 NM_018904.2 ?/. - c.-11545G>T r.(?) p.(=)
PCDHA2 NM_018905.2 ?/. - c.2388+73372G>T r.(=) p.(=)
PCDHA3 NM_018906.2 ?/. - c.2394+67133G>T r.(=) p.(=)
PCDHA4 NM_018907.2 ?/. - c.2385+61152G>T r.(=) p.(=)
PCDHA5 NM_018908.2 ?/. - c.2352+46597G>T r.(=) p.(=)
PCDHA6 NM_018909.2 ?/. - c.2394+40239G>T r.(=) p.(=)
PCDHA7 NM_018910.2 ?/. - c.2355+33986G>T r.(=) p.(=)
PCDHA8 NM_018911.2 ?/. - c.2394+27009G>T r.(=) p.(=)
PCDHA9 NM_031857.1 ?/. - c.2394+19835G>T r.(=) p.(=)


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