Variant #0000330617 (NC_000005.9:g.140762659C>T, NC_000005.9(NM_018916.3):c.2424+36635C>T (PCDHGA3))

Chromosome 5
Allele Unknown
Affects function (as reported) Effect unknown
Affects function (by curator) Not classified
Classification method -
Clinical classification VUS
DNA change (genomic) (Relative to hg19 / GRCh37) g.140762659C>T
DNA change (hg38) -
Published as PCDHGA7(NM_018920.3):c.193C>T (p.(Arg65Cys))
ISCN -
DB-ID PCDHGA1_000014
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00045 View details
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2018-01-15 20:58:59 +01:00 (CET)
Date last edited 2020-03-23 16:13:27 +01:00 (CET)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PCDHGC3 NM_002588.2 ?/. - c.-93025C>T r.(?) p.(=)
PCDHGA12 NM_003735.2 ?/. - c.-47668C>T r.(?) p.(=)
PCDHGB4 NM_003736.2 ?/. - c.-4793C>T r.(?) p.(=)
PCDHGA1 NM_018912.2 ?/. - c.2421+49987C>T r.(=) p.(=)
PCDHGA10 NM_018913.2 ?/. - c.-30084C>T r.(?) p.(=)
PCDHGA11 NM_018914.2 ?/. - c.-38136C>T r.(?) p.(=)
PCDHGA2 NM_018915.2 ?/. - c.2424+41697C>T r.(=) p.(=)
PCDHGA3 NM_018916.3 ?/. - c.2424+36635C>T r.(=) p.(=)
PCDHGA4 NM_018917.2 ?/. - c.2421+25471C>T r.(=) p.(=)
PCDHGA5 NM_018918.2 ?/. - c.2421+16341C>T r.(=) p.(=)
PCDHGA6 NM_018919.2 ?/. - c.2424+6585C>T r.(=) p.(=)
PCDHGA7 NM_018920.2 ?/. - c.193C>T r.(?) p.(Arg65Cys)
PCDHGA9 NM_018921.2 ?/. - c.-19861C>T r.(?) p.(=)
PCDHGB1 NM_018922.2 ?/. - c.2409+30423C>T r.(=) p.(=)
PCDHGB2 NM_018923.2 ?/. - c.2421+20536C>T r.(=) p.(=)
PCDHGB3 NM_018924.2 ?/. - c.2415+10283C>T r.(=) p.(=)
PCDHGB5 NM_018925.2 ?/. - c.-15036C>T r.(?) p.(=)
PCDHGB6 NM_018926.2 ?/. - c.-25111C>T r.(?) p.(=)
PCDHGB7 NM_018927.3 ?/. - c.-34768C>T r.(?) p.(=)
PCDHGC4 NM_018928.2 ?/. - c.-102082C>T r.(?) p.(=)
PCDHGC5 NM_018929.2 ?/. - c.-106149C>T r.(?) p.(=)
PCDHGA8 NM_032088.1 ?/. - c.-9722C>T r.(?) p.(=)


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