Variant #0000368781 (NC_000002.11:g.(?_47596644)_(47607109_47612304)del, EPCAM(NM_002354.2):c.(?_-1)_(858+1_859-1)del)

Individual ID 00164297
Chromosome 2
Allele Both (homozygous)
Affects function (as reported) Affects function
Affects function (by curator) Not classified
Classification method -
Clinical classification pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.(?_47596644)_(47607109_47612304)del
DNA change (hg38) -
Published as del Ex1-7
ISCN -
DB-ID EPCAM_000032
Variant remarks -
Reference Salomon 2014
ClinVar ID -
dbSNP ID -
Origin Germline
Segregation -
Frequency -
Re-site -
VIP 0
Methylation -
Average frequency (gnomAD v.2.1.1) Variant not found in online data sets
Owner Mamata Sivagnanam
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Johan den Dunnen
Options




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
EPCAM NM_002354.2 +/. _1_7i c.(?_-1)_(858+1_859-1)del r.0 p.0



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000165164 DNA SEQ - - EPCAM 1 Mamata Sivagnanam