Variant #0000478204 (NC_000003.11:g.157820514G>A, NM_003030.4:c.580C>T (SHOX2))
| Chromosome |
3 |
| Allele |
Unknown |
| Affects function (as reported) |
Affects function |
| Affects function (by curator) |
Not classified |
| Classification method |
- |
| Clinical classification |
NA |
| DNA change (genomic) (Relative to hg19 / GRCh37) |
g.157820514G>A |
| DNA change (hg38) |
g.158102725G>A |
| Published as |
- |
| ISCN |
- |
| DB-ID |
SHOX2_000002 See all 2 reported entries |
| Variant remarks |
expression cloning luciferase assay shows inability to activate BMP4/ISL1 promoter activity |
| Reference |
PubMed: Li 2018 |
| ClinVar ID |
- |
| dbSNP ID |
- |
| Origin |
In vitro (cloned) |
| Segregation |
- |
| Frequency |
- |
| Re-site |
- |
| VIP |
- |
| Methylation |
- |
| Average frequency (gnomAD v.2.1.1) |
Retrieve |
| Owner |
Johan den Dunnen |
| Database submission license |
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International |
| Created by |
Johan den Dunnen |
| Date created |
2019-05-10 09:09:10 +02:00 (CEST) |
| Date last edited |
2020-07-14 21:51:45 +02:00 (CEST) |

Variant on transcripts
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