Variant #0000478204 (NC_000003.11:g.157820514G>A, NM_003030.4:c.580C>T (SHOX2))

Chromosome 3
Allele Unknown
Affects function (as reported) Affects function
Affects function (by curator) Not classified
Classification method -
Clinical classification NA
DNA change (genomic) (Relative to hg19 / GRCh37) g.157820514G>A
DNA change (hg38) g.158102725G>A
Published as -
ISCN -
DB-ID SHOX2_000002 See all 2 reported entries
Variant remarks expression cloning luciferase assay shows inability to activate BMP4/ISL1 promoter activity
Reference PubMed: Li 2018
ClinVar ID -
dbSNP ID -
Origin In vitro (cloned)
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) Retrieve
Owner Johan den Dunnen
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Johan den Dunnen
Date created 2019-05-10 09:09:10 +02:00 (CEST)
Date last edited 2020-07-14 21:51:45 +02:00 (CEST)
Options




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
SHOX2 NM_003030.4 +/. - c.580C>T r.(?) p.Arg194*


Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our APIs to retrieve data.