Variant #0000498913 (NC_000005.9:g.150227998C>T, NM_001145805.1:c.313C>T (IRGM))

Chromosome 5
Allele Unknown
Affects function (as reported) Probably affects function
Affects function (by curator) Effect unknown
Classification method -
Clinical classification NA
DNA change (genomic) (Relative to hg19 / GRCh37) g.150227998C>T
DNA change (hg38) g.150848436C>T
Published as -
ISCN -
DB-ID IRGM_000001 See all 3 reported entries
Variant remarks Crohn's disease-associated risk allele (C = protective allele); located in seed region miR-196, reduced binding to miR-196and consequently no down-regulation IRGM protein expression
Reference PubMed: Brest et al 2011
ClinVar ID -
dbSNP ID -
Origin In vitro (cloned)
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.16487 View details
Owner LOVD
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Gerard C.P. Schaafsma
Date created 2011-06-15 14:30:03 +02:00 (CEST)
Date last edited 2020-07-14 21:56:45 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
IRGM NM_001145805.1 +?/? 2 c.313C>T r.(?) p.(=)


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