Variant #0000524472 (NC_000005.9:g.140188007C>T, NC_000005.9(NM_018900.2):c.2394+19738C>T (PCDHA1))

Chromosome 5
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.140188007C>T
DNA change (hg38) -
Published as PCDHA4(NM_018907.3):c.1235C>T (p.(Ala412Val))
ISCN -
DB-ID PCDHA1_000033
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00038 View details
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2019-07-18 18:22:55 +02:00 (CEST)
Date last edited 2020-03-23 16:13:27 +01:00 (CET)
Options




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PCDHAC1 NM_018898.3 -?/. - c.-118471C>T r.(?) p.(=)
PCDHAC2 NM_018899.5 -?/. - c.-158345C>T r.(?) p.(=)
PCDHA1 NM_018900.2 -?/. - c.2394+19738C>T r.(=) p.(=)
PCDHA10 NM_018901.2 -?/. - c.-47627C>T r.(?) p.(=)
PCDHA11 NM_018902.3 -?/. - c.-60682C>T r.(?) p.(=)
PCDHA12 NM_018903.2 -?/. - c.-67051C>T r.(?) p.(=)
PCDHA13 NM_018904.2 -?/. - c.-73847C>T r.(?) p.(=)
PCDHA2 NM_018905.2 -?/. - c.2388+11070C>T r.(=) p.(=)
PCDHA3 NM_018906.2 -?/. - c.2394+4831C>T r.(=) p.(=)
PCDHA4 NM_018907.2 -?/. - c.1235C>T r.(?) p.(Ala412Val)
PCDHA5 NM_018908.2 -?/. - c.-13354C>T r.(?) p.(=)
PCDHA6 NM_018909.2 -?/. - c.-19670C>T r.(?) p.(=)
PCDHA7 NM_018910.2 -?/. - c.-25962C>T r.(?) p.(=)
PCDHA8 NM_018911.2 -?/. - c.-32900C>T r.(?) p.(=)
PCDHA9 NM_031857.1 -?/. - c.-40074C>T r.(?) p.(=)


Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our APIs to retrieve data.