Variant #0000524536 (NC_000005.9:g.140710540G>T, NM_018916.3:c.-13061G>T (PCDHGA3))

Chromosome 5
Allele Unknown
Affects function (as reported) Effect unknown
Affects function (by curator) Not classified
Classification method -
Clinical classification VUS
DNA change (genomic) (Relative to hg19 / GRCh37) g.140710540G>T
DNA change (hg38) -
Published as PCDHGA1(NM_018912.2):c.289G>T (p.A97S)
ISCN -
DB-ID PCDHGA1_000044
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 1.0E-5 View details
Owner VKGL-NL_Rotterdam
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Rotterdam
Date created 2019-07-18 18:22:55 +02:00 (CEST)
Date last edited 2020-03-23 16:13:27 +01:00 (CET)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PCDHGC3 NM_002588.2 ?/. - c.-145144G>T r.(?) p.(=)
PCDHGA12 NM_003735.2 ?/. - c.-99787G>T r.(?) p.(=)
PCDHGB4 NM_003736.2 ?/. - c.-56912G>T r.(?) p.(=)
PCDHGA1 NM_018912.2 ?/. - c.289G>T r.(?) p.(Ala97Ser)
PCDHGA10 NM_018913.2 ?/. - c.-82203G>T r.(?) p.(=)
PCDHGA11 NM_018914.2 ?/. - c.-90255G>T r.(?) p.(=)
PCDHGA2 NM_018915.2 ?/. - c.-7999G>T r.(?) p.(=)
PCDHGA3 NM_018916.3 ?/. - c.-13061G>T r.(?) p.(=)
PCDHGA4 NM_018917.2 ?/. - c.-24228G>T r.(?) p.(=)
PCDHGA5 NM_018918.2 ?/. - c.-33358G>T r.(?) p.(=)
PCDHGA6 NM_018919.2 ?/. - c.-43111G>T r.(?) p.(=)
PCDHGA7 NM_018920.2 ?/. - c.-51927G>T r.(?) p.(=)
PCDHGA9 NM_018921.2 ?/. - c.-71980G>T r.(?) p.(=)
PCDHGB1 NM_018922.2 ?/. - c.-19288G>T r.(?) p.(=)
PCDHGB2 NM_018923.2 ?/. - c.-29163G>T r.(?) p.(=)
PCDHGB3 NM_018924.2 ?/. - c.-39422G>T r.(?) p.(=)
PCDHGB5 NM_018925.2 ?/. - c.-67155G>T r.(?) p.(=)
PCDHGB6 NM_018926.2 ?/. - c.-77230G>T r.(?) p.(=)
PCDHGB7 NM_018927.3 ?/. - c.-86887G>T r.(?) p.(=)
PCDHGC4 NM_018928.2 ?/. - c.-154201G>T r.(?) p.(=)
PCDHGC5 NM_018929.2 ?/. - c.-158268G>T r.(?) p.(=)
PCDHGA8 NM_032088.1 ?/. - c.-61841G>T r.(?) p.(=)


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