Variant #0000524538 (NC_000005.9:g.140711970C>T, NM_018916.3:c.-11631C>T (PCDHGA3))

Chromosome 5
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.140711970C>T
DNA change (hg38) -
Published as PCDHGA1(NM_018912.2):c.1719C>T (p.T573=)
ISCN -
DB-ID PCDHGA1_000046
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 9.0E-5 View details
Owner VKGL-NL_Rotterdam
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Rotterdam
Date created 2019-07-18 18:22:55 +02:00 (CEST)
Date last edited 2020-08-06 14:59:34 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PCDHGC3 NM_002588.2 -?/. - c.-143714C>T r.(?) p.(=)
PCDHGA12 NM_003735.2 -?/. - c.-98357C>T r.(?) p.(=)
PCDHGB4 NM_003736.2 -?/. - c.-55482C>T r.(?) p.(=)
PCDHGA1 NM_018912.2 -?/. - c.1719C>T r.(?) p.(Thr573=)
PCDHGA10 NM_018913.2 -?/. - c.-80773C>T r.(?) p.(=)
PCDHGA11 NM_018914.2 -?/. - c.-88825C>T r.(?) p.(=)
PCDHGA2 NM_018915.2 -?/. - c.-6569C>T r.(?) p.(=)
PCDHGA3 NM_018916.3 -?/. - c.-11631C>T r.(?) p.(=)
PCDHGA4 NM_018917.2 -?/. - c.-22798C>T r.(?) p.(=)
PCDHGA5 NM_018918.2 -?/. - c.-31928C>T r.(?) p.(=)
PCDHGA6 NM_018919.2 -?/. - c.-41681C>T r.(?) p.(=)
PCDHGA7 NM_018920.2 -?/. - c.-50497C>T r.(?) p.(=)
PCDHGA9 NM_018921.2 -?/. - c.-70550C>T r.(?) p.(=)
PCDHGB1 NM_018922.2 -?/. - c.-17858C>T r.(?) p.(=)
PCDHGB2 NM_018923.2 -?/. - c.-27733C>T r.(?) p.(=)
PCDHGB3 NM_018924.2 -?/. - c.-37992C>T r.(?) p.(=)
PCDHGB5 NM_018925.2 -?/. - c.-65725C>T r.(?) p.(=)
PCDHGB6 NM_018926.2 -?/. - c.-75800C>T r.(?) p.(=)
PCDHGB7 NM_018927.3 -?/. - c.-85457C>T r.(?) p.(=)
PCDHGC4 NM_018928.2 -?/. - c.-152771C>T r.(?) p.(=)
PCDHGC5 NM_018929.2 -?/. - c.-156838C>T r.(?) p.(=)
PCDHGA8 NM_032088.1 -?/. - c.-60411C>T r.(?) p.(=)


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