Variant #0000524562 (NC_000005.9:g.140802855_140802857del, NC_000005.9(NM_018916.3):c.2425-71519_2425-71517del (PCDHGA3))

Chromosome 5
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.140802855_140802857del
DNA change (hg38) -
Published as PCDHGA11(NM_018914.2):c.2060_2062del (p.(Ser688del))
ISCN -
DB-ID PCDHGA1_000070
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) Retrieve
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2019-07-18 18:22:55 +02:00 (CEST)
Date last edited 2020-03-23 16:13:27 +01:00 (CET)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PCDHGC3 NM_002588.2 -?/. - c.-52829_-52827del r.(?) p.(=)
PCDHGA12 NM_003735.2 -?/. - c.-7472_-7470del r.(?) p.(=)
PCDHGB4 NM_003736.2 -?/. - c.2397+33007_2397+33009del r.(=) p.(=)
PCDHGA1 NM_018912.2 -?/. - c.2422-71519_2422-71517del r.(=) p.(=)
PCDHGA10 NM_018913.2 -?/. - c.2436+7677_2436+7679del r.(=) p.(=)
PCDHGA11 NM_018914.2 -?/. - c.2061_2063del r.(?) p.(Ser688del)
PCDHGA2 NM_018915.2 -?/. - c.2425-71519_2425-71517del r.(=) p.(=)
PCDHGA3 NM_018916.3 -?/. - c.2425-71519_2425-71517del r.(=) p.(=)
PCDHGA4 NM_018917.2 -?/. - c.2421+65667_2421+65669del r.(=) p.(=)
PCDHGA5 NM_018918.2 -?/. - c.2421+56537_2421+56539del r.(=) p.(=)
PCDHGA6 NM_018919.2 -?/. - c.2424+46781_2424+46783del r.(=) p.(=)
PCDHGA7 NM_018920.2 -?/. - c.2424+37965_2424+37967del r.(=) p.(=)
PCDHGA9 NM_018921.2 -?/. - c.2424+17912_2424+17914del r.(=) p.(=)
PCDHGB1 NM_018922.2 -?/. - c.2409+70619_2409+70621del r.(=) p.(=)
PCDHGB2 NM_018923.2 -?/. - c.2421+60732_2421+60734del r.(=) p.(=)
PCDHGB3 NM_018924.2 -?/. - c.2415+50479_2415+50481del r.(=) p.(=)
PCDHGB5 NM_018925.2 -?/. - c.2397+22764_2397+22766del r.(=) p.(=)
PCDHGB6 NM_018926.2 -?/. - c.2418+12668_2418+12670del r.(=) p.(=)
PCDHGB7 NM_018927.3 -?/. - c.2415+3014_2415+3016del r.(=) p.(=)
PCDHGC4 NM_018928.2 -?/. - c.-61886_-61884del r.(?) p.(=)
PCDHGC5 NM_018929.2 -?/. - c.-65953_-65951del r.(?) p.(=)
PCDHGA8 NM_032088.1 -?/. - c.2424+28051_2424+28053del r.(=) p.(=)


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