Variant #0000569295 (NC_000020.10:g.2846052T>C, NM_022575.2:c.2182T>C (VPS16))

Chromosome 20
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.2846052T>C
DNA change (hg38) g.2865406T>C
Published as VPS16(NM_022575.2):c.2182T>C (p.(Trp728Arg))
ISCN -
DB-ID PCED1A_000004
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00711 View details
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2019-07-18 18:22:55 +02:00 (CEST)
Date last edited 2020-03-23 16:13:27 +01:00 (CET)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PTPRA NM_002836.3 -?/. - c.-129+89T>C r.(=) p.(=)
VPS16 NM_022575.2 -?/. - c.2182T>C r.(?) p.(Trp728Arg)
PCED1A NM_022760.4 -?/. - c.-25217A>G r.(?) p.(=)


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