Variant #0000605812 (NC_000001.10:g.46654964G>A, NM_001243766.1:c.1935C>T (POMGNT1))

Chromosome 1
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.46654964G>A
DNA change (hg38) g.46189292G>A
Published as POMGNT1(NM_017739.3):c.1961C>T (p.P654L)
ISCN -
DB-ID LURAP1_000015
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 4.0E-5 View details
Owner VKGL-NL_Rotterdam
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Rotterdam
Date created 2019-12-04 14:54:23 +01:00 (CET)
Date last edited 2020-08-06 14:59:34 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
LURAP1 NM_001013615.2 -?/. - c.-14135G>A r.(?) p.(=)
POMGNT1 NM_001243766.1 -?/. - c.1935C>T r.(?) p.(Pro645=)
TSPAN1 NM_005727.3 -?/. - c.*3759G>A r.(=) p.(=)
POMGNT1 NM_017739.3 -?/. - c.1961C>T r.(?) p.(Pro654Leu)


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