Variant #0000647612 (NC_000001.10:g.235658099T>C, B3GALNT2(NM_152490.3):c.152A>G)

Individual ID 00289755
Chromosome 1
Allele Parent #1
Affects function (as reported) Does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.235658099T>C
DNA change (hg38) g.235494789T>C
Published as -
ISCN -
DB-ID TBCE_000062 See all 2 reported entries
Variant remarks 5 heterozygous, no homozygous; Clinindb (India)
Reference PubMed: Narang 2020, Journal: Narang 2020
ClinVar ID -
dbSNP ID rs61742900
Origin Germline
Segregation -
Frequency 5/2795 individuals
Re-site -
VIP 0
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00164 View details
Owner Mohammed Faruq
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Johan den Dunnen
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
B3GALNT2 NM_152490.3 -/. - c.152A>G r.(?) p.(Tyr51Cys)



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000290923 DNA arraySNP - Infinium Global Screening Array v1.0 - 1 Mohammed Faruq