Variant #0000756940 (NC_000002.11:g.47600704C>T, EPCAM(NM_002354.2):c.179C>T)

Individual ID 00356079
Chromosome 2
Allele Parent #1
Affects function (as reported) Effect unknown
Affects function (by curator) Not classified
Classification method -
Clinical classification NA
DNA change (genomic) (Relative to hg19 / GRCh37) g.47600704C>T
DNA change (hg38) -
Published as chr2_47600704_C_T
ISCN -
DB-ID EPCAM_000131 See all 2 reported entries
Variant remarks the study was not designed to clinically classify individual variants but performed burden-type association analyses, grouping certain variant types
Reference PubMed: Dorling 2021, Journal: Dorling 2021
ClinVar ID -
dbSNP ID -
Origin Germline
Segregation -
Frequency 13/53461 controls
Re-site -
VIP 0
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00014 View details
Owner BRIDGES consortium
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Johan den Dunnen
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
EPCAM NM_002354.2 ?/. - c.179C>T r.(?) p.(Ser60Leu)



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000357309 DNA SEQ-NG - 34-gene panel EPCAM 1 BRIDGES consortium