Variant #0000846862 (NC_000002.11:g.47707823A>G, NC_000002.11(NM_000251.2):c.2459-12A>G (MSH2))
| Chromosome |
2 |
| Allele |
Unknown |
| Affects function (as reported) |
Affects function |
| Affects function (by curator) |
Not classified |
| Classification method |
- |
| Clinical classification |
NA |
| DNA change (genomic) (Relative to hg19 / GRCh37) |
g.47707823A>G |
| DNA change (hg38) |
- |
| Published as |
- |
| ISCN |
- |
| DB-ID |
MSH2_000661 See all 11 reported entries |
| Variant remarks |
MaxEntScan: strong decrease in reference 3'ss strength (ΔMES= -42%) SpliceSiteFinder-Like: destruction of reference 3'ss (ΔSSFL=-100%) SpliceAI: Acceptor Loss 12 nt downstream the variant (reference 3'ss, SpliceAI score=0.73), and Acceptor Gain 1 nt downstream the variant, i.e. 11 nt upstream the lost reference 3'ss (SpliceAI score=0.98, corresponding to the creation of a new 3'ss also predicted by MaxEntScan and SpliceSiteFinder-Like) |
| Reference |
Morak et al., submitted to EJHG |
| ClinVar ID |
- |
| dbSNP ID |
- |
| Origin |
In silico |
| Segregation |
- |
| Frequency |
- |
| Re-site |
- |
| VIP |
- |
| Methylation |
- |
| Average frequency (gnomAD v.2.1.1) |
Retrieve |
| Owner |
Alexandra Martins |
| Database submission license |
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International |
| Created by |
InSiGHT - John-Paul Plazzer |
| Date created |
2022-04-21 08:53:23 +02:00 (CEST) |
| Date last edited |
2022-04-22 04:25:06 +02:00 (CEST) |

Variant on transcripts
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