Variant #0000846862 (NC_000002.11:g.47707823A>G, NC_000002.11(NM_000251.2):c.2459-12A>G (MSH2))

Chromosome 2
Allele Unknown
Affects function (as reported) Affects function
Affects function (by curator) Not classified
Classification method -
Clinical classification NA
DNA change (genomic) (Relative to hg19 / GRCh37) g.47707823A>G
DNA change (hg38) -
Published as -
ISCN -
DB-ID MSH2_000661 See all 11 reported entries
Variant remarks MaxEntScan: strong decrease in reference 3'ss strength (ΔMES= -42%)
SpliceSiteFinder-Like: destruction of reference 3'ss (ΔSSFL=-100%)
SpliceAI: Acceptor Loss 12 nt downstream the variant (reference 3'ss, SpliceAI score=0.73), and Acceptor Gain 1 nt downstream the variant, i.e. 11 nt upstream the lost reference 3'ss (SpliceAI score=0.98, corresponding to the creation of a new 3'ss also predicted by MaxEntScan and SpliceSiteFinder-Like)
Reference Morak et al., submitted to EJHG
ClinVar ID -
dbSNP ID -
Origin In silico
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) Retrieve
Owner Alexandra Martins
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by InSiGHT - John-Paul Plazzer
Date created 2022-04-21 08:53:23 +02:00 (CEST)
Date last edited 2022-04-22 04:25:06 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
MSH2 NM_000251.2 +/. 14i c.2459-12A>G r.(2458_2459insATTTCTTATAG) p.(Gly820Aspfs*4)


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