Variant #0000868247 (NC_000013.10:g.37439827G>A, NM_001127217.2:c.850C>T (SMAD9))

Chromosome 13
Allele Unknown
Affects function (as reported) Affects function
Affects function (by curator) Not classified
Classification method -
Clinical classification NA
DNA change (genomic) (Relative to hg19 / GRCh37) g.37439827G>A
DNA change (hg38) g.36865690G>A
Published as -
ISCN -
DB-ID SMAD9_000022 See all 2 reported entries
Variant remarks This is a bioinformatic data analysis of the data obtained from TCGA (cbioprotal). The information on the samples was obtained from TCGA dataset of 452 patients. The authors of this paper have only done bioinformatic analysis using various software like oncoprint data analysis, protein stability analysis, gnomAD analysis etc. No wetlab has been performed in this study.
Reference PubMed: Thariny 2021
ClinVar ID -
dbSNP ID rs553369182
Origin In silico
Segregation -
Frequency 0.018 gnomAD
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 2.0E-5 View details
Owner Litika Vermani
Database submission license Creative Commons Attribution-NonCommercial 4.0 InternationalCreative Commons License
Created by Litika Vermani
Date created 2022-05-14 16:52:07 +02:00 (CEST)
Date last edited 2022-05-16 09:29:05 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
SMAD9 NM_001127217.2 +/. - c.850C>T r.(850c>u) p.(Arg284*)


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