Variant #0000868247 (NC_000013.10:g.37439827G>A, NM_001127217.2:c.850C>T (SMAD9))
| Chromosome |
13 |
| Allele |
Unknown |
| Affects function (as reported) |
Affects function |
| Affects function (by curator) |
Not classified |
| Classification method |
- |
| Clinical classification |
NA |
| DNA change (genomic) (Relative to hg19 / GRCh37) |
g.37439827G>A |
| DNA change (hg38) |
g.36865690G>A |
| Published as |
- |
| ISCN |
- |
| DB-ID |
SMAD9_000022 See all 2 reported entries |
| Variant remarks |
This is a bioinformatic data analysis of the data obtained from TCGA (cbioprotal). The information on the samples was obtained from TCGA dataset of 452 patients. The authors of this paper have only done bioinformatic analysis using various software like oncoprint data analysis, protein stability analysis, gnomAD analysis etc. No wetlab has been performed in this study. |
| Reference |
PubMed: Thariny 2021 |
| ClinVar ID |
- |
| dbSNP ID |
rs553369182 |
| Origin |
In silico |
| Segregation |
- |
| Frequency |
0.018 gnomAD |
| Re-site |
- |
| VIP |
- |
| Methylation |
- |
| Average frequency (gnomAD v.2.1.1) |
2.0E-5 View details |
| Owner |
Litika Vermani |
| Database submission license |
Creative Commons Attribution-NonCommercial 4.0 International |
| Created by |
Litika Vermani |
| Date created |
2022-05-14 16:52:07 +02:00 (CEST) |
| Date last edited |
2022-05-16 09:29:05 +02:00 (CEST) |

Variant on transcripts
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