Variant #0000976604 (NC_000005.9:g.140725648A>T, NM_018916.3:c.2048A>T (PCDHGA3))

Chromosome 5
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.140725648A>T
DNA change (hg38) -
Published as PCDHGA3(NM_018916.4):c.2048A>T (p.(Lys683Ile))
ISCN -
DB-ID PCDHGA1_000088
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00262 View details
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2024-04-19 20:27:30 +02:00 (CEST)
Date last edited N/A
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PCDHGC3 NM_002588.2 -?/. - c.-130036A>T r.(?) p.(=)
PCDHGA12 NM_003735.2 -?/. - c.-84679A>T r.(?) p.(=)
PCDHGB4 NM_003736.2 -?/. - c.-41804A>T r.(?) p.(=)
PCDHGA1 NM_018912.2 -?/. - c.2421+12976A>T r.(=) p.(=)
PCDHGA10 NM_018913.2 -?/. - c.-67095A>T r.(?) p.(=)
PCDHGA11 NM_018914.2 -?/. - c.-75147A>T r.(?) p.(=)
PCDHGA2 NM_018915.2 -?/. - c.2424+4686A>T r.(=) p.(=)
PCDHGA3 NM_018916.3 -?/. - c.2048A>T r.(?) p.(Lys683Ile)
PCDHGA4 NM_018917.2 -?/. - c.-9120A>T r.(?) p.(=)
PCDHGA5 NM_018918.2 -?/. - c.-18250A>T r.(?) p.(=)
PCDHGA6 NM_018919.2 -?/. - c.-28003A>T r.(?) p.(=)
PCDHGA7 NM_018920.2 -?/. - c.-36819A>T r.(?) p.(=)
PCDHGA9 NM_018921.2 -?/. - c.-56872A>T r.(?) p.(=)
PCDHGB1 NM_018922.2 -?/. - c.-4180A>T r.(?) p.(=)
PCDHGB2 NM_018923.2 -?/. - c.-14055A>T r.(?) p.(=)
PCDHGB3 NM_018924.2 -?/. - c.-24314A>T r.(?) p.(=)
PCDHGB5 NM_018925.2 -?/. - c.-52047A>T r.(?) p.(=)
PCDHGB6 NM_018926.2 -?/. - c.-62122A>T r.(?) p.(=)
PCDHGB7 NM_018927.3 -?/. - c.-71779A>T r.(?) p.(=)
PCDHGC4 NM_018928.2 -?/. - c.-139093A>T r.(?) p.(=)
PCDHGC5 NM_018929.2 -?/. - c.-143160A>T r.(?) p.(=)
PCDHGA8 NM_032088.1 -?/. - c.-46733A>T r.(?) p.(=)


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