Variant #0001046769 (NC_000020.10:g.2841439G>A, NM_022575.2:c.560G>A (VPS16))

Chromosome 20
Allele Unknown
Affects function (as reported) Effect unknown
Affects function (by curator) Not classified
Classification method -
Clinical classification VUS
DNA change (genomic) (Relative to hg19 / GRCh37) g.2841439G>A
DNA change (hg38) -
Published as VPS16(NM_022575.4):c.560G>A (p.R187Q)
ISCN -
DB-ID PCED1A_000024
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 4.0E-5 View details
Owner VKGL-NL_Groningen
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Groningen
Date created 2025-07-08 13:22:38 +02:00 (CEST)
Date last edited N/A
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PTPRA NM_002836.3 ?/. - c.-4077G>A r.(?) p.(=)
VPS16 NM_022575.2 ?/. - c.560G>A r.(?) p.(Arg187Gln)
PCED1A NM_022760.4 ?/. - c.-20604C>T r.(?) p.(=)


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