Variant #0001052233 (NC_000005.9:g.179250971C>T, NM_003900.4:c.415C>T (SQSTM1))

Chromosome 5
Allele Unknown
Affects function (as reported) Effect unknown
Affects function (by curator) Not classified
Classification method -
Clinical classification VUS
DNA change (genomic) (Relative to hg19 / GRCh37) g.179250971C>T
DNA change (hg38) -
Published as SQSTM1(NM_003900.5):c.415C>T (p.(Arg139Cys))
ISCN -
DB-ID C5orf45_000029
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 3.0E-5 View details
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2025-11-01 13:22:20 +01:00 (CET)
Date last edited N/A
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
SQSTM1 NM_003900.4 ?/. - c.415C>T r.(?) p.(Arg139Cys)
MGAT4B NM_014275.4 ?/. - c.-17388G>A r.(?) p.(=)
C5orf45 NM_016175.3 ?/. - c.*13420G>A r.(=) p.(=)


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