Variant #0001063432 (NC_000002.11:g.48982641T>C, NC_000002.11(NM_000233.3):c.161+9A>G (LHCGR))

Chromosome 2
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely benign
DNA change (genomic) (Relative to hg19 / GRCh37) g.48982641T>C
DNA change (hg38) -
Published as LHCGR(NM_000233.4):c.161+9A>G
ISCN -
DB-ID GTF2A1L_000023
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00022 View details
Owner VKGL-NL_Leiden
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Leiden
Date created 2026-01-20 18:57:21 +01:00 (CET)
Date last edited N/A
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
LHCGR NM_000233.3 -?/. - c.161+9A>G r.(=) p.(=)
STON1-GTF2A1L NM_001198593.1 -?/. - c.3442-20778T>C r.(=) p.(=)
GTF2A1L NM_006872.3 -?/. - c.*76060T>C r.(=) p.(=)
STON1 NM_006873.3 -?/. - c.*160200T>C r.(=) p.(=)


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