All variants in the PRPS1 gene

This database is one of the gene variant databases from the Leiden Muscular Dystrophy pages
Information The variants shown are described using the NM_002764.3 transcript reference sequence.

80 entries on 1 page. Showing entries 1 - 80.
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Effect     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Owner     
+/+ 1 c.46T>C r.(?) p.(Ser16Pro) - pathogenic g.106871904T>C g.107628674T>C - - PRPS1_000037 - MORL Deafness Variation Database, PubMed: Almoguera 2014 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+?/. - c.47C>T r.(?) p.(Ser16Phe) - likely pathogenic g.106871905C>T g.107628675C>T PRPS1 c.47C>T, p.Ser16Phe - PRPS1_000052 - PubMed: Georgiou 2021 - - Unknown ? - - - - LOVD
+/. - c.82G>C r.(?) p.(Gly28Arg) - pathogenic (recessive) g.106871940G>C g.107628710G>C - - PRPS1_000053 - PubMed: Shirakawa 2021 - - Germline - - - - - Yvet den Hartog
+/. - c.129A>C r.(?) p.(Glu43Asp) - pathogenic g.106882531A>C g.107639301A>C PRPS1(NM_002764.4):c.129A>C (p.E43D) - PRPS1_000004 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_AMC
+/. 2 c.129A>C r.(?) p.(Glu43Asp) - pathogenic g.106882531A>C g.107639301A>C - - PRPS1_000004 - PubMed: Kim 2007 - - Germline - - - - - Johan den Dunnen
+/+ 2 c.129A>C r.(?) p.(Glu43Asp) - pathogenic g.106882531A>C g.107639301A>C - - PRPS1_000004 - MORL Deafness Variation Database, PubMed: Kim 1993, PubMed: Bird 1993, PubMed: Kim 2007 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 2 c.130A>G r.(?) p.(Ile44Val) ACMG pathogenic (recessive) g.106882532A>G - - - PRPS1_000045 - PubMed: Puusepp 2020, Journal: Puusepp 2020 - - Germline - absent from gnomAD - - - Sander Pajusalu
?/. - c.136G>C r.(?) p.(Glu46Gln) - pathogenic g.106882538G>C g.107639308G>C - - PRPS1_000034 - Mercati et al 2019 submitted - - Germline yes - - - - Laurence Jonard
+/. 2 c.154G>C r.(?) p.(Asp52His) - pathogenic g.106882556G>C g.107639326G>C - - PRPS1_000005 - PubMed: Becker 1995 - - Germline - - - - - Johan den Dunnen
+/+ 2 c.154G>C r.(?) p.(Asp52His) - pathogenic g.106882556G>C g.107639326G>C - - PRPS1_000005 - MORL Deafness Variation Database, PubMed: Zoref 1975, PubMed: Becker 1995, PubMed: de Brouwer 1993, PubMed: Chen 2013 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 2 c.193G>A r.(?) p.(Asp65Asn) - pathogenic g.106882595G>A g.107639365G>A c.193G>A - PRPS1_000006 - PubMed: Liu 2010 - - Germline - - - - - Johan den Dunnen
+/+ 2 c.193G>A r.(?) p.(Asp65Asn) - pathogenic g.106882595G>A g.107639365G>A - - PRPS1_000006 - MORL Deafness Variation Database, PubMed: Liu 2010, PubMed: Shearer 1993, PubMed: Liu 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 2 c.202A>T r.(?) p.(Met68Leu) - pathogenic g.106882604A>T g.107639374A>T - - PRPS1_000031 - submitted for publication - - Somatic yes - - - - Justine Lerat
+/. 2 c.202A>T r.(?) p.(Met68Leu) - pathogenic g.106882604A>T - c.202A>T - PRPS1_000031 - - - - Germline - - - - - LOVD
+?/. - c.206A>C r.(?) p.(Glu69Ala) - pathogenic (dominant) g.106882608A>C g.107639378A>C - - PRPS1_000035 de novo in patient Mercati et al 2019 submitted - - De novo - - - - - Laurence Jonard
+/. 2 c.259G>A r.(?) p.(Ala87Thr) - pathogenic g.106882661G>A g.107639431G>A c.259G>A - PRPS1_000007 - PubMed: Liu 2010 - - Germline - - - - - Johan den Dunnen
+/+ 2 c.259G>A r.(?) p.(Ala87Thr) - pathogenic g.106882661G>A g.107639431G>A - - PRPS1_000007 - MORL Deafness Variation Database, PubMed: Liu 2010, PubMed: Shearer 1993, PubMed: Tyson 1996, PubMed: Liu 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
?/. - c.287G>A r.(?) p.(Arg96Gln) - VUS g.106882689G>A g.107639459G>A - - PRPS1_000028 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Nijmegen
+?/. - c.292G>A r.(?) p.(Asp98Asn) ACMG likely pathogenic g.106882694G>A g.107639464G>A PRPS1 c.292G>A, p.(Asp98Asn) - PRPS1_000051 heterozygous PubMed: Dineiro 2020 - - Germline ? - - - - LOVD
-/- 3 c.336T>C r.(=) p.(=) - benign g.106884161T>C g.107640931T>C - - PRPS1_000038 - MORL Deafness Variation Database, PubMed: de Brouwer 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 3 c.337G>T r.(?) p.(Ala113Ser) - pathogenic g.106884162G>T g.107640932G>T c.337G>T - PRPS1_000019 variant absent in 123 Italian normal-hearing controls, 1000 Genome Project, and NHLBIExome Variant Server PubMed: Robusto 2015 - - Germline - - - - - Giulia Soldà
+/+ 3 c.337G>T r.(?) p.(Ala113Ser) - pathogenic g.106884162G>T g.107640932G>T - - PRPS1_000019 - MORL Deafness Variation Database, PubMed: Shearer 1993, PubMed: Robusto 2015, PubMed: Liu 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 3 c.341A>G r.(?) p.(Asn114Ser) - pathogenic g.106884166A>G g.107640936A>G c.341A>G - PRPS1_000008 - PubMed: Roessler 1991 - - Germline - - - - - Johan den Dunnen
+/+ 3 c.341A>G r.(?) p.(Asn114Ser) - pathogenic g.106884166A>G g.107640936A>G - - PRPS1_000008 - MORL Deafness Variation Database, PubMed: Roessler 1993, PubMed: Becker 1995, PubMed: de Brouwer 1993, PubMed: Becker 1986, PubMed: Roessler 1991 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 3 c.343A>G r.(?) p.(Met115Val) - pathogenic g.106884168A>G g.107640938A>G c.343A>G - PRPS1_000020 variant absent in 123 Italian normal-hearing controls, 1000 Genome Project, and NHLBIExome Variant Server PubMed: Robusto 2015 - - Germline - - - - - Giulia Soldà
+/+ 3 c.343A>G r.(?) p.(Met115Val) - pathogenic g.106884168A>G g.107640938A>G - - PRPS1_000020 - MORL Deafness Variation Database, PubMed: Shearer 1993, PubMed: Robusto 2015, PubMed: Bird 1993, PubMed: Kim 1993, PubMed: Liu 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. - c.344T>C r.(?) p.(Met115Thr) - pathogenic g.106884169T>C g.107640939T>C PRPS1(NM_002764.4):c.344T>C (p.M115T) - PRPS1_000009 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_AMC
+/. 3 c.344T>C r.(?) p.(Met115Thr) - pathogenic g.106884169T>C g.107640939T>C c.344T>C - PRPS1_000009 - PubMed: Kim 2007 - - Germline - - - - - Johan den Dunnen
+/+ 3 c.344T>C r.(?) p.(Met115Thr) - pathogenic g.106884169T>C g.107640939T>C - - PRPS1_000009 - MORL Deafness Variation Database, PubMed: Kim 1993, PubMed: Bird 1993, PubMed: Kim 2007 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/+ 3 c.362C>G r.(?) p.(Ala121Gly) - pathogenic g.106884187C>G g.107640957C>G - - PRPS1_000039 - MORL Deafness Variation Database, PubMed: Park 2013, PubMed: Kim 1993, PubMed: Bird 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
?/. - c.366T>C r.(?) p.(Asp122=) - VUS g.106884191T>C g.107640961T>C PRPS1(NM_001204402.1):c.-82-4216T>C (p.(=)) - PRPS1_000024 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Leiden
+?/. - c.372T>G r.(?) p.(Ile124Met) - likely pathogenic g.106884197T>G - - - PRPS1_000050 - - - - CLASSIFICATION record - - - - - MobiDetails
?/. - c.383A>T r.(?) p.(Asp128Val) - pathogenic g.106884208A>T g.107640978A>T - - PRPS1_000033 - Mercati et al 2019 submitted - - Germline/De novo (untested) yes - - - - Laurence Jonard
+/. 3 c.385C>A r.(?) p.(Leu129Ile) - pathogenic g.106884210C>A g.107640980C>A c.385C>A - PRPS1_000010 - PubMed: Becker 1995 - - Germline - - - - - Johan den Dunnen
+/+ 3 c.385C>A r.(?) p.(Leu129Ile) - pathogenic g.106884210C>A g.107640980C>A - - PRPS1_000010 - MORL Deafness Variation Database, PubMed: Becker 1995, PubMed: de Brouwer 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 3 c.398A>C r.(?) p.(Gln133Pro) - pathogenic g.106884223A>C g.107640993A>C c.398A>C - PRPS1_000011 - PubMed: de Brouwer 2007 - - Germline - - - - - Johan den Dunnen
+/+ 3 c.398A>C r.(?) p.(Gln133Pro) - pathogenic g.106884223A>C g.107640993A>C - - PRPS1_000011 - MORL Deafness Variation Database, PubMed: de Brouwer 1993, PubMed: de Brouwer 2007 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/+ 4 c.424G>C r.(?) p.(Val142Leu) - pathogenic g.106885614G>C g.107642384G>C - - PRPS1_000040 - MORL Deafness Variation Database, PubMed: Moran 2012, PubMed: de Brouwer 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+?/. - c.437A>G r.(?) p.(Tyr146Cys) - likely pathogenic g.106885627A>G - - - PRPS1_000054 - - - - CLASSIFICATION record - - - - - MobiDetails
-?/. - c.447G>A r.(?) p.(Pro149=) - likely benign g.106885637G>A g.107642407G>A PRPS1(NM_002764.3):c.447G>A (p.P149=), PRPS1(NM_002764.4):c.447G>A (p.P149=) - PRPS1_000025 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Rotterdam
-/. - c.447G>A r.(?) p.(Pro149=) - benign g.106885637G>A g.107642407G>A PRPS1(NM_002764.3):c.447G>A (p.P149=), PRPS1(NM_002764.4):c.447G>A (p.P149=) - PRPS1_000025 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_AMC
+/. 4 c.455T>C r.(?) p.(Leu152Pro) - pathogenic g.106885645T>C g.107642415T>C c.455T>C - PRPS1_000012 - PubMed: de Brouwer 2007 - - Germline - - - - - Johan den Dunnen
+/+ 4 c.455T>C r.(?) p.(Leu152Pro) - pathogenic g.106885645T>C g.107642415T>C - - PRPS1_000012 - MORL Deafness Variation Database, PubMed: de Brouwer 1993, PubMed: Arts 1993, PubMed: de Brouwer 2007 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
-?/. - c.477C>T r.(?) p.(Ile159=) - likely benign g.106885667C>T g.107642437C>T PRPS1(NM_002764.4):c.477C>T (p.I159=) - PRPS1_000026 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Groningen
-?/. - c.477C>T r.(=) p.(=) - likely benign g.106885667C>T g.107642437C>T I159I - PRPS1_000026 found once, nonrecurrent change PubMed: Tarpey 2009 - - Germline - 1/208 cases - - - Lucy Raymond
-/. - c.477C>T r.(?) p.(Ile159=) - benign g.106885667C>T g.107642437C>T PRPS1(NM_002764.4):c.477C>T (p.I159=) - PRPS1_000026 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_AMC
./. - c.531-74C>T r.(=) p.(=) - VUS g.106888333C>T g.107645103C>T - - PRPS1_000001 - - - - Germline - - - - - Yu Sun
./. - c.531-74C>T r.(=) p.(=) - VUS g.106888333C>T g.107645103C>T - - PRPS1_000001 - - - - Germline - - - - - Yu Sun
-?/. - c.531-15C>T r.(=) p.(=) - likely benign g.106888392C>T - PRPS1(NM_002764.4):c.531-15C>T - PRPS1_000055 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_AMC
-?/. - c.531-14G>A r.(=) p.(=) - likely benign g.106888393G>A - PRPS1(NM_002764.4):c.531-14G>A - PRPS1_000056 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_AMC
+/. 5 c.547G>C r.(?) p.(Asp183His) - pathogenic g.106888423G>C g.107645193G>C c.547G>C - PRPS1_000013 - PubMed: Roessler 1991 - - Germline - - - - - Johan den Dunnen
+/+ 5 c.547G>C r.(?) p.(Asp183His) - pathogenic g.106888423G>C g.107645193G>C - - PRPS1_000013 - MORL Deafness Variation Database, PubMed: Roessler 1993, PubMed: Becker 1980, PubMed: de Brouwer 1993, PubMed: Becker 1995, PubMed: Roessler 1991 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 5 c.569C>T r.(?) p.(Ala190Val) - pathogenic g.106888445C>T g.107645215C>T c.569C>T - PRPS1_000014 - PubMed: Becker 1995 - - Germline - - - - - Johan den Dunnen
+/+ 5 c.569C>T r.(?) p.(Ala190Val) - pathogenic g.106888445C>T g.107645215C>T - - PRPS1_000014 - MORL Deafness Variation Database, PubMed: Becker 1995, PubMed: de Brouwer 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
-?/. - c.573G>A r.(?) p.(Leu191=) - likely benign g.106888449G>A - PRPS1(NM_002764.3):c.573G>A (p.L191=), PRPS1(NM_002764.4):c.573G>A (p.L191=) - PRPS1_000046 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Groningen
-?/. - c.573G>A r.(?) p.(Leu191=) - likely benign g.106888449G>A - PRPS1(NM_002764.3):c.573G>A (p.L191=), PRPS1(NM_002764.4):c.573G>A (p.L191=) - PRPS1_000046 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Rotterdam
-?/. - c.573G>A r.(?) p.(Leu191=) - likely benign g.106888449G>A - PRPS1(NM_002764.3):c.573G>A (p.L191=), PRPS1(NM_002764.4):c.573G>A (p.L191=) - PRPS1_000046 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Utrecht
+/. 5 c.578A>T r.(?) p.(His193Leu) - pathogenic g.106888454A>T g.107645224A>T c.578A>T - PRPS1_000015 - PubMed: Garcia-Pavia 2003 - - Germline - - - - - Johan den Dunnen
+/+ 5 c.578A>T r.(?) p.(His193Leu) - pathogenic g.106888454A>T g.107645224A>T - - PRPS1_000015 - MORL Deafness Variation Database, PubMed: García-Pavía 2003 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 5 c.579C>G r.(?) p.(His193Gln) - pathogenic g.106888455C>G g.107645225C>G c.579C>G - PRPS1_000016 - PubMed: Becker 1995 - - Germline - - - - - Johan den Dunnen
+/+ 5 c.579C>G r.(?) p.(His193Gln) - pathogenic g.106888455C>G g.107645225C>G - - PRPS1_000016 - MORL Deafness Variation Database, PubMed: Becker 1995, PubMed: de Brouwer 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/+ 5 c.586C>T r.(?) p.(Arg196Trp) - pathogenic g.106888462C>T g.107645232C>T - - PRPS1_000041 - MORL Deafness Variation Database, PubMed: Al-Maawali 2015 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
?/. - c.677G>A r.(?) p.(Cys226Tyr) - VUS g.106888553G>A g.107645323G>A PRPS1(NM_002764.3):c.677G>A (p.C226Y) - PRPS1_000032 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Rotterdam
?/. - c.705-6C>T r.(=) p.(=) - VUS g.106890830C>T g.107647600C>T PRPS1(NM_001204402.1):c.93-6C>T (p.(=)) - PRPS1_000027 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Leiden
?/. - c.779G>A r.(?) p.(Arg260His) - VUS g.106890910G>A - PRPS1(NM_002764.3):c.779G>A (p.R260H), PRPS1(NM_002764.4):c.779G>A (p.R260H) - PRPS1_000044 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Rotterdam
?/. - c.779G>A r.(?) p.(Arg260His) - VUS g.106890910G>A - PRPS1(NM_002764.3):c.779G>A (p.R260H), PRPS1(NM_002764.4):c.779G>A (p.R260H) - PRPS1_000044 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Groningen
?/. - c.779G>A r.(?) p.(Arg260His) - VUS g.106890910G>A - PRPS1(NM_002764.3):c.779G>A (p.R260H), PRPS1(NM_002764.4):c.779G>A (p.R260H) - PRPS1_000044 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Nijmegen
?/. - c.802G>A r.(?) p.(Ala268Thr) - VUS g.106890933G>A g.107647703G>A PRPS1(NM_002764.4):c.802G>A (p.A268T) - PRPS1_000043 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Groningen
+?/. - c.827C>A r.(?) p.(Pro276His) - likely pathogenic g.106890958C>A g.107647728C>A - - PRPS1_000047 combination of variants not reported PubMed: Topf 2020 - - Germline - 1/1001 cases - - - Johan den Dunnen
+/+ 6 c.830A>C r.(?) p.(Gln277Pro) - pathogenic g.106890961A>C g.107647731A>C - - PRPS1_000042 - MORL Deafness Variation Database, PubMed: Synofzik 2014 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
?/. - c.868A>G r.(?) p.(Ile290Val) - VUS g.106893173A>G - PRPS1(NM_002764.3):c.868A>G (p.I290V) - PRPS1_000049 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Rotterdam
+/. 7 c.869T>C r.(?) p.(Ile290Thr) - pathogenic g.106893174T>C g.107649944T>C c.869T>C - PRPS1_000017 - PubMed: Liu 2010 - - Germline - - - - - Johan den Dunnen
+/+ 7 c.869T>C r.(?) p.(Ile290Thr) - pathogenic g.106893174T>C g.107649944T>C - - PRPS1_000017 - MORL Deafness Variation Database, PubMed: Liu 2010, PubMed: Shearer 1993, PubMed: Cui 2004, PubMed: Liu 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+/. 7 c.916G>A r.(?) p.(Gly306Arg) - pathogenic g.106893221G>A g.107649991G>A c.916G>A - PRPS1_000018 - PubMed: Liu 2010 - - Germline - - - - - Johan den Dunnen
+/+ 7 c.916G>A r.(?) p.(Gly306Arg) - pathogenic g.106893221G>A g.107649991G>A - - PRPS1_000018 - MORL Deafness Variation Database, PubMed: Liu 2010, PubMed: Shearer 1993, PubMed: Manolis 1999, PubMed: Liu 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
+?/. - c.917G>A r.(?) p.(Gly306Glu) - likely pathogenic g.106893222G>A g.107649992G>A - - PRPS1_000048 combination of variants not reported PubMed: Topf 2020 - - Germline - 1/1001 cases - - - Johan den Dunnen
+/. 7 c.925G>T r.(?) p.(Val309Phe) - pathogenic g.106893230G>T g.107650000G>T c.925G>T - PRPS1_000021 variant absent in 123 Italian normal-hearing controls, 1000 Genome Project, and NHLBIExome Variant Server PubMed: Robusto 2015 - - Germline - - - - - Giulia Soldà
+/+ 7 c.925G>T r.(?) p.(Val309Phe) - pathogenic g.106893230G>T g.107650000G>T - - PRPS1_000021 - MORL Deafness Variation Database, PubMed: Robusto 2015, PubMed: Kim 1993, PubMed: Bird 1993 - - SUMMARY record - - - - - Global Variome, with Curator vacancy
-?/. - c.942C>T r.(=) p.(=) - likely benign g.106893247C>T g.107650017C>T S314S - PRPS1_000030 found once, nonrecurrent change PubMed: Tarpey 2009 - - Germline - 1/208 cases - - - Lucy Raymond
-?/. - c.942C>T r.(?) p.(Ser314=) - likely benign g.106893247C>T - PRPS1(NM_002764.3):c.942C>T (p.S314=) - PRPS1_000030 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - VKGL-NL_Rotterdam
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