Full data view for gene COL5A2

Ehlers Danlos Syndrome Variant Database


Information The variants shown are described using the NM_000393.3 transcript reference sequence.

5 entries on 1 page. Showing entries 1 - 5.
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Effect     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

Predicted     

Type/DNA     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

Country     

Population     

Age at death     

VIP     

Data_av     

Treatment     

Panel size     

Owner     
-/. - c.1378C>T r.(?) p.(Pro460Ser) - - Unknown - benign g.189932764G>A g.189068038G>A COL5A2(NM_000393.5):c.1378C>T (p.P460S) - COL5A2_000022 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.1378C>T r.(?) p.(Pro460Ser) - - Unknown - benign g.189932764G>A g.189068038G>A COL5A2(NM_000393.5):c.1378C>T (p.P460S) - COL5A2_000022 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1378C>T r.(?) p.(Pro460Ser) - - Parent #1 - likely benign g.189932764G>A g.189068038G>A - - COL5A2_000022 99 heterozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs35830636 Germline - 99/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 99 Mohammed Faruq
-?/. - c.1378C>T r.(?) p.(Pro460Ser) - - Both (homozygous) - likely benign g.189932764G>A g.189068038G>A - - COL5A2_000022 4 homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs35830636 Germline - 4/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 4 Mohammed Faruq
?/- 21 c.1378C>T r.(?) p.(Pro460Ser) missense substitution Unknown - VUS g.189932764G>A - - - COL5A2_000022 - - - rs35830636 Unknown - - - - - ? ? - - ? - - The information in dbSNP is muddled. Care! - - - - - - - - 1 Raymond Dalgleish
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