Global Variome shared LOVD
RP1 (retinitis pigmentosa 1 (autosomal dominant))
LOVD v.3.0 Build 30b [
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Global Variome, with Curator vacancy
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This database is one of the
"Eye disease"
gene variant databases.
The variants shown are described using the NM_006269.1 transcript reference sequence.
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Exon
: number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = from intron 2 to intron 7, 8i_9 = intron 8/exon 9 boundary, _1 = 5' to exon 1, 18_ = 3' of exon 18, _1_18_ = encompassing the entire 18-exon gene
DNA change (cDNA)
: description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup. For deletions/duplications extending beyond the reference transcript resp. {0}/{2} is used to replace del/dup. Extent of the deletion/duplication should be specified using the genomic description (g.). "-" indicates the variant described on genomic level does not affect the coding DNA reference sequence.
RNA change
: description of variant at RNA level (following HGVS recommendations).
r.123c>u
r.? = unknown
r.(?) = RNA not analysed but probably transcribed copy of DNA variant
r.spl? = RNA not analysed but variant probably affects splicing
r.(spl?) = RNA not analysed but variant may affect splicing
r.0? = change expected to abolish transcription
Protein
: description of variant at protein level (following HGVS recommendations).
p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
p.Arg345Pro = change derived from RNA analysis
p.? = unknown effect
p.0? = probably no protein produced
Allele
: On which allele is the variant located? Does not necessarily imply inheritance! 'Paternal' (confirmed or inferred), 'Maternal' (confirmed or inferred), 'Parent #1' or #2 for compound heterozygosity without having screened the parents, 'Unknown' for heterozygosity without having screened the parents, 'Both' for homozygozity.
Classification method
: The method used for the clinical classification of this variant.
All options:
ACMG
ACGS
EAHAD-CFDB
ENIGMA
IARC
InSiGHT
kConFab
other
Clinical classification
: Clinical classification of variant, preferably based on standardised criteria (e.g. ACMG), directed on the clinical consequences as published/submitted, indicated using an enriched system including inheritance: e.g. pathogenic, pathogenic (dominant), pathogenic (recessive), pathogenic (!), pathogenic (maternal), pathogenic (paternal). Standard inheritance is covered by dominant/recessive, imprinting by maternal/paternal. A '!' warns for exceptional circumstances to be explained in the 'Remarks' field (low penetrance, variants pathogenic in heterozygous state only, hypomorphic/hypermorphic variants, protective variants, etc.). Non-disease consequences (e.g. drug metabolism (pharmacogenetics), risk factor, blood group, tasting bitter) are indicated using additions to the benign classification; benign (dominant), benign (recessive), benign (!), etc. The value 'association' is used for variants associated with a phenotype and 'NA' for variants from in vitro/in silico records. NOTE: classification may differ from the opinion of the curator as given in a variant SUMMARY-record or the 'Functional effect concluded'). NOTE: pathogenic/likely pathogenic should go together with "variant (probably) affects function" In ClassFunctional.
All options:
pathogenic
pathogenic (dominant)
pathogenic (recessive)
pathogenic (!)
pathogenic (maternal)
pathogenic (paternal)
likely pathogenic
likely pathogenic (dominant)
likely pathogenic (recessive)
likely pathogenic (!)
likely pathogenic (maternal)
likely pathogenic (paternal)
VUS
VUS (!)
likely benign
likely benign (dominant)
likely benign (recessive)
likely benign (!)
likely benign (maternal)
likely benign (paternal)
benign
benign (dominant)
benign (recessive)
benign (!)
benign (maternal)
benign (paternal)
conflicting
association
NA
DNA change (genomic) (hg19)
: HGVS description of variant at DNA level, based on the genomic (chromosomal) DNA reference sequence; e.g. g.12345678C>T, g.12345679del, g.12345678_12345890dup
DNA change (hg38)
: HGVS description of variant at DNA level, based on the hg38 genomic (chromosomal) eference sequence; e.g. g.12345678C>T, g.12345679del, g.12345678_12345890dup
Published as
: listed only when different from "DNA change"; variant as reported originally (e.g. 521delT). Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G)
ISCN
: description of the variant according to ISCN nomenclature
DB-ID
: database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro
Variant remarks
: remarks regarding variant described, e.g. germline mosaicism in mother, 345 kb deletion, muscle RNA analysed, not in 200 control chromosomes tested, on founder haplotype, etc.
Reference
: publication describing the variant submitted, incl. links to OMIM, PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
ClinVar ID
: ID of variant in ClinVar database
dbSNP ID
: the dbSNP ID
Origin
: Origin of variant/record: Germline = in all cells, De novo = in all cells, but not in either parent, Germline/De novo (untested) = in all cells, parents not tested (use only when De novo is likely, e.g. isolated/sporadic cases with dominant disease), Somatic = present in a subset of cells, but not in either parent, Uniparental disomy = from parental disomy (maternal or paternal), CLASSIFICATION record = submitter only sharing variant classification (note another report may share Individual data), SUMMARY record = master summary record from curator (may link to another database), In vitro (cloned) = data resulting from in vitro functional assays, animal model = data from animal model, Artefact = false positive variant call, DUPLICATE record = variant already described on another chromosome (e.g. unbalanced translocation, duplicating transposition, 2nd fusion transcript, etc.)
All options:
Germline
De novo
Germline/De novo (untested)
Somatic
Uniparental disomy
Uniparental disomy, maternal allele
Uniparental disomy, paternal allele
CLASSIFICATION record
SUMMARY record
In vitro (cloned)
In silico
animal model
Artefact
DUPLICATE record
Unknown
Not applicable
Segregation
: Indicates whether the variant segregates with the phenotype (yes), does not segregate with the phenotype (no) or segregation is unknown (?)
All options:
? = unknown
yes = segregates with phenotype
no = does not segregate with phenotype
- = not applicable
Frequency
: frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested)
Re-site
: restriction enzyme recognition site created (+) or destroyed (-); e.g. BglII+;BamHI-
VIP
: variant VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Methylation
: result of methylation test; GOM (gain of methylation), LOM (loss of methylation), 30% (30% methylated). NOTE: when several tests were done mention the method as well (e.g. MS-PCR 75%)
Template
: Template(s) used to detect the sequence variant; DNA (genomic DNA), RNA (cDNA) or protein
All options:
DNA
RNA = RNA (cDNA)
protein
? = unknown
Technique
: technique(s) used to identify the sequence variant.
All options:
? = unknown
ARMS = amplification refractory mutation system
arrayCGH = array for Comparative Genomic Hybridisation
arrayMET = array for methylation analysis
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
ASO = allele-specific oligo hybridisation
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
COBRA = Combined Bisulfite Restriction Analysis
CSCE = Conformation Sensitive Capillary Electrophoresis
CSGE = Conformation Sensitive Gel Electrophoresis
ddF = dideoxy Fingerprinting
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
DSCA = Double-Strand DNA Conformation Analysis
DSDI = Detection Small Deletions and Insertions
EMC = Enzymatic Mismatch Cleavage
expr = expression analysis
FISH = Fluorescent In-Situ Hybridisation
FISHf = fiberFISH
HD = HeteroDuplex analysis
HPLC = High-Performance Liquid Chromatography
IEF = IsoElectric Focussing
IHC = Immuno-Histo-Chemistry
Invader = Invader assay
MAPH = Multiplex Amplifiable Probe Hybridisation
MAQ = Multiplex Amplicon Quantification
MCA = Melting Curve Analysis, high-resolution (HRMA)
microscope = microscopic analysis (karyotype)
microsat = microsatellite genotyping
minigene = expression minigene construct
MIP = Molecular Inversion Probe amplification
MIPsm = single molecule Molecular Inversion Probe amplification
MLPA = Multiplex Ligation-dependent Probe Amplification
MLPA-ms = Multiplex Ligation-dependent Probe Amplification, methylation specific
MS = mass spectrometry
Northern = Northern blotting
NUC = nuclease digestion (RNAseT1, S1)
OM = optical mapping
PAGE = Poly-Acrylamide Gel-Electrophoresis
PCR = Polymerase Chain Reaction
PCRdd = PCR, digital droplet
PCRdig = PCR + restriction enzyme digestion
PCRh = PCR, haloplex
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRms = PCR, methylation sensitive
PCRq = PCR, quantitative (qPCR)
PCRrp = PCR, repeat-primed (RP-PCR)
PCRsqd = PCR, semi-quantitative duplex
PE = primer extension (APEX, SNaPshot)
PEms = primer extension, methylation-sensitive single-nucleotide
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
PTT = Protein Truncation Test
RFLP = Restriction Fragment Length Polymorphisms
RT-PCR = Reverse Transcription and PCR
RT-PCRq = Reverse Transcription and PCR, quantitative
SBE = Single Base Extension
SEQ = SEQuencing (Sanger)
SEQb = bisulfite SEQuencing
SEQp = pyroSequencing
SEQms = sequencing, methylation specific
SEQ-ON = next-generation sequencing - Oxford Nanopore
SEQ-NG = next-generation sequencing
SEQ-NG-RNA = next-generation sequencing RNA
SEQ-NG-H = next-generation sequencing - Helicos
SEQ-NG-I = next-generation sequencing - Illumina/Solexa
SEQ-NG-IT = next-generation sequencing - Ion Torrent
SEQ-NG-R = next-generation sequencing - Roche/454
SEQ-NG-S = next-generation sequencing - SOLiD
SEQ-PB = next-generation sequencing - Pacific Biosciences
SNPlex = SNPlex
Southern = Southern blotting
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = fluorescent SSCA (SSCP)
STR = Short Tandem Repeat
TaqMan = TaqMan assay
Western = Western blotting
- = not applicable
Tissue
: tissue type used for analysis
Remarks
: remarks regarding the screening like WGS (whole genome sequencing), WES (whole exome sequencing, gene panel (incl. a list of genes analysed), etc.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
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|
Text
Arg|Ser
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!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
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=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
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!=""
Text
!="p.0"
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combination
Text
*|Ter !fs
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Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
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|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
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>=
Numeric
>=23
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combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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81 entries on 1 page. Showing entries 1 - 81.
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Legend
How to query
Effect
Exon
DNA change (cDNA)
RNA change
Protein
Allele
Classification method
Clinical classification
DNA change (genomic) (hg19)
DNA change (hg38)
Published as
ISCN
DB-ID
Variant remarks
Reference
ClinVar ID
dbSNP ID
Origin
Segregation
Frequency
Re-site
VIP
Methylation
Template
Technique
Tissue
Remarks
Disease
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Panel size
Owner
-?/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely benign
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Baum 2001
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
Healthy/Control
-
-
-
-
-
-
-
-
-
-
-
1
Christina Zeitz
-?/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely benign
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
Chiang 2006
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
Healthy/Control
-
-
-
-
-
-
-
-
-
-
-
1
Christina Zeitz
-?/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely benign
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Yeung 2001
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
?
-
-
-
-
-
-
-
-
-
-
-
1
Johan den Dunnen
?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
VUS
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Koyanagi 2019
,
Journal: Koyanagi 2019
-
rs118031911
Germline
-
28/1202 cases with retinitis pigmentosa
-
-
-
DNA
SEQ-NG
-
-
retinal disease
-
PubMed: Koyanagi 2019
,
Journal: Koyanagi 2019
analysis 1202 retinitis pigmentosa cases
-
-
Japan
-
-
-
-
-
28
Yoshito Koyanagi
?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Both (homozygous)
-
VUS
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Koyanagi 2019
,
Journal: Koyanagi 2019
-
rs118031911
Germline
-
4/1202 cases with retinitis pigmentosa
-
-
-
DNA
SEQ-NG
-
-
retinal disease
-
PubMed: Koyanagi 2019
,
Journal: Koyanagi 2019
analysis 1202 retinitis pigmentosa cases
-
-
Japan
-
-
-
-
-
4
Yoshito Koyanagi
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
-
likely pathogenic
g.55542239C>T
g.54629679C>T
RP1(NM_006269.2):c.5797C>T (p.R1933*)
-
RP1_000018
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Both (homozygous)
-
pathogenic (!)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
not pathogenic in homozygous state
PubMed: Nikopoulos 2019
-
-
Germline
-
3/12,379 homozygous controls
-
-
-
DNA
SEQ
-
-
Healthy/Control
controls
PubMed: Nikopoulos 2019
analysis 12,379 control individuals
-
-
Japan
-
-
-
-
-
3
Johan den Dunnen
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (!)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Nikopoulos 2019
-
-
Germline
-
142/12,379 heterozygous controls
-
-
-
DNA
SEQ
-
-
Healthy/Control
controls
PubMed: Nikopoulos 2019
analysis 12,379 control individuals
-
-
Japan
-
-
-
-
-
142
Johan den Dunnen
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
M15
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
M9
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
R(O)40
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
R21
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
221
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
R(O)44
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐610
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐302
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
Q‐116
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐179
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐285
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐419
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐424
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐733
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐794
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐812
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐814
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐884
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐967
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
R170
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
R204
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
YWC101
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
YWC102
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
YWC107
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐553
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
YWC100
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
YWC193
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #1
-
pathogenic (recessive)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
suggested association with variants in other RP genes (incl. EYS)
PubMed: Nikopoulos 2019
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
-
retinal disease
YWC6
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #2
-
pathogenic (!)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Nikopoulos 2019
-
rs118031911
Germline
yes
-
-
-
-
DNA
SEQ
-
-
retinal disease
C1
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #2
-
pathogenic (!)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Nikopoulos 2019
-
rs118031911
Germline
yes
-
-
-
-
DNA
SEQ
-
-
retinal disease
M5
PubMed: Nikopoulos 2019
-
M
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #2
-
pathogenic (!)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Nikopoulos 2019
-
rs118031911
Germline
yes
-
-
-
-
DNA
SEQ
-
-
retinal disease
M7
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #2
-
pathogenic (!)
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Nikopoulos 2019
-
rs118031911
Germline
yes
-
-
-
-
DNA
SEQ
-
-
retinal disease
OPH‐280
PubMed: Nikopoulos 2019
-
F
-
Japan
-
-
-
-
-
1
Global Variome, with Curator vacancy
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Both (homozygous)
-
likely pathogenic
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Maeda 2018
-
rs118031911
Germline
-
-
-
-
-
DNA
SEQ, SEQ-NG
-
39-gene panel
retinal disease
Pat38
PubMed: Maeda 2018
family
F
-
Japan
-
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
PubMed: Fujinami 2016
-
rs118031911
Germline
-
-
-
-
-
DNA
SEQ-NG
-
WES
OCMD
Fam6PatII2
PubMed: Fujinami 2016
-
M
-
Japan
-
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
PubMed: Fujinami 2016
-
-
Germline
-
-
-
-
-
DNA
SEQ-NG
-
WES
OCMD
Fam15PatII2
PubMed: Fujinami 2016
-
M
-
Japan
-
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
-
VUS
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
-
PubMed: Xu 2014
-
rs118031911
Germline
-
1/314 case chromosomes
-
-
-
DNA
SEQ-NG
-
gene panel
retinal disease
RP323
PubMed: Xu 2014
-
-
-
China
-
-
-
-
-
1
LOVD
?/.
4
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
-
VUS
g.55542239C>T
g.54629679C>T
C5797T
-
RP1_000018
-
PubMed: Katagiri 2014
-
rs118031911
Germline
-
-
-
-
-
DNA
SEQ-NG
-
WES
retinal disease
RP#030
PubMed: Katagiri 2014
family
-
-
Japan
-
-
-
-
-
1
LOVD
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
ACMG
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-I
-
-
macular dystrophy
IR_SH_0041
-
-
F
-
Korea, South (Republic)
-
-
-
-
-
1
Jinu Han
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
ACMG
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-IT
-
-
macular dystrophy
IR_SH_0066
-
-
M
-
Korea, South (Republic)
-
-
-
-
-
1
Jinu Han
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
ACMG
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-I
-
-
macular dystrophy
IR_GS_0037
-
-
F
-
Korea, South (Republic)
-
-
-
-
-
1
Jinu Han
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
ACMG
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-I
-
-
CORD
IR_GH_0081
-
-
F
-
Korea, South (Republic)
-
-
-
-
-
1
Jinu Han
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
ACMG
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-I
-
-
macular dystrophy
IR_GS_0191
-
-
F
-
Korea, South (Republic)
-
-
-
-
-
1
Jinu Han
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
ACMG
pathogenic
g.55542239C>T
-
-
-
RP1_000018
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-I
-
-
CORD
IR_BDC_0002
-
-
M
-
Korea, South (Republic)
-
-
-
-
-
1
Jinu Han
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Both (homozygous)
-
likely pathogenic
g.55542239C>T
g.54629679C>T
c.5797C>T, p.(Arg1933*)
-
RP1_000018
Homozygous
PubMed: Wang 2019
-
-
Germline
?
-
-
-
-
DNA
SEQ-NG
blood
panel of 126 genes
retinal disease
13685
PubMed: Wang 2019
-
F
-
China
-
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
ACMG
VUS
g.55542239C>T
g.54629679C>T
RP1 c.C5797T, p.R1933X
-
RP1_000018
marked as possibly causative, single heterozygous change in a recessive gene, heterozygous
PubMed: Ma 2021
-
-
Unknown
?
-
-
-
-
DNA
SEQ-NG-I, SEQ
-
whole exome sequencing
retinal disease
20
PubMed: Ma 2021
-
?
-
Korea
-
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
ACMG
VUS
g.55542239C>T
g.54629679C>T
RP1 c.C5797T, p.R1933X
-
RP1_000018
marked as possibly causative, single heterozygous change in a recessive gene, heterozygous
PubMed: Ma 2021
-
-
Unknown
?
-
-
-
-
DNA
SEQ-NG-I, SEQ
-
whole exome sequencing
retinal disease
46
PubMed: Ma 2021
-
?
-
Korea
-
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.C5797T, p.R1933X
-
RP1_000018
marked as causative, heterozygous
PubMed: Ma 2021
-
-
Unknown
?
-
-
-
-
DNA
SEQ-NG-I, SEQ
-
whole exome sequencing
retinal disease
98
PubMed: Ma 2021
-
?
-
Korea
-
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
ACMG
VUS
g.55542239C>T
g.54629679C>T
RP1 c.C5797T, p.R1933X
-
RP1_000018
marked as causative, heterozygous
PubMed: Ma 2021
-
-
Unknown
?
-
-
-
-
DNA
SEQ-NG-I, SEQ
-
whole exome sequencing
retinal disease
168
PubMed: Ma 2021
-
?
-
Korea
-
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
ACMG
VUS
g.55542239C>T
g.54629679C>T
RP1 c.C5797T, p.R1933X
-
RP1_000018
marked as causative, heterozygous
PubMed: Ma 2021
-
-
Unknown
?
-
-
-
-
DNA
SEQ-NG-I, SEQ
-
whole exome sequencing
retinal disease
171
PubMed: Ma 2021
-
?
-
Korea
-
-
-
-
-
1
LOVD
+?/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely pathogenic (dominant)
g.55542239C>T
-
c.5797C>T
-
RP1_000018
-
PubMed: Liu-2020
-
-
Germline
-
-
-
-
-
DNA
SEQ-NG
-
hereditary eye disease enrichment panel (HEDEP)
retinal disease
-
PubMed: Liu-2020
-
M
-
-
-
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.[5797C>T];[5797=], V1: c.5797C>T, (p.Arg1933Ter)
-
RP1_000018
heterozygous
PubMed: Chen 2021
-
-
Unknown
?
-
-
-
-
DNA
SEQ-NG
blood
212 inherited retinal disease-related genes
retinal disease
F175
PubMed: Chen 2021
-
?
-
Taiwan
-
-
-
-
-
1
LOVD
+/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
pathogenic (recessive)
g.55542239C>T
-
c.5797C>T:p.R1933X
-
RP1_000018
-
PubMed: Numa-2020
-
-
Unknown
-
-
-
-
-
DNA
SEQ, SEQ-NG
-
-
retinal disease
-
PubMed: Numa 2020
-
F
-
Japan
Japanese
-
-
-
-
1
LOVD
?/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Maternal (inferred)
-
VUS
g.55542239C>T
g.54629679C>T
RP1 R1933X
-
RP1_000018
heterozygous; does not cause dominant disease - authors proposed that RP can be caused by lack of the region of RP1 protein after codon 1052 but before 1933; abstract only
PubMed: Zhang 2002
-
-
Germline
yes
heterozygous also in three control individuals
-
-
-
DNA
CSGE, SEQ
blood
-
retinal disease
?
PubMed: Zhang 2002
abstract only
?
-
China
-
-
-
-
-
1
LOVD
+?/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Maternal (confirmed)
-
likely pathogenic (recessive)
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T; p.R1933*
-
RP1_000018
heterozygous
PubMed: Li 2018
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
targeted next-generation sequencing
retinal disease
93
PubMed: Li 2018
family ARRP-93
M
-
China
Chinese
-
-
-
-
1
LOVD
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely pathogenic (recessive)
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, p.Arg1933*
-
RP1_000018
heterozygous
PubMed: Verbakel 2019
-
-
Unknown
?
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole exome sequencing: vision gene panel analysis
retinal disease
G-II:2
PubMed: Verbakel 2019
family G, proband
F
-
-
East Asian
-
-
-
-
1
LOVD
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely pathogenic (recessive)
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, p.Arg1933*
-
RP1_000018
heterozygous
PubMed: Verbakel 2019
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole exome sequencing: vision gene panel analysis
retinal disease
A-II:2
PubMed: Verbakel 2019
family A, proband
F
-
-
white
-
-
-
-
1
LOVD
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely pathogenic (recessive)
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, p.Arg1933*
-
RP1_000018
heterozygous
PubMed: Verbakel 2019
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole exome sequencing: vision gene panel analysis
retinal disease
A-II:4
PubMed: Verbakel 2019
family A, proband's brother
M
-
-
white
-
-
-
-
1
LOVD
+?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
likely pathogenic (recessive)
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, p.Arg1933*
-
RP1_000018
heterozygous
PubMed: Verbakel 2019
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole exome sequencing: vision gene panel analysis
retinal disease
A-II:5
PubMed: Verbakel 2019
family A, proband's sister 2
F
-
-
white
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Parent #1
-
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.[5797C>T];[5797=]; p.(Arg1933Ter)
-
RP1_000018
heterozygous
PubMed: Chen 2021
-
-
Germline
yes
Taiwan Biobank: 0.001318; GnomAD_exome_East: 0.00201; GnomAD_All: 0.000179
-
-
-
DNA
SEQ-NG
-
targeted 212 IRD-related genes
retinal disease
F175
PubMed: Chen 2021
-
-
-
Taiwan
-
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Paternal (confirmed)
-
VUS
g.55542239C>T
g.54629679C>T
RP1 c.5797C > T, p.(Arg1933*)
-
RP1_000018
heterozygous
PubMed: Won 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
panel sequencing, whole exome and genome sequencing
retinal disease
B.II-1
PubMed: Won 2021
family B, individual II:1
F
-
Korea, South (Republic)
Korean
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Unknown
-
VUS
g.55542239C>T
g.54629679C>T
RP1 c.5797C > T, p.(Arg1933*)
-
RP1_000018
heterozygous
PubMed: Won 2021
-
-
Germline/De novo (untested)
?
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole exome sequencing
retinal disease
C.II-2
PubMed: Won 2021
family C, individual II:2
M
-
Korea, South (Republic)
Korean
-
-
-
-
1
LOVD
?/.
-
c.5797C>T
r.(?)
p.(Arg1933*)
Maternal (confirmed)
-
VUS
g.55542239C>T
g.54629679C>T
RP1 c.5797C > T, p.(Arg1933*)
-
RP1_000018
heterozygous
PubMed: Won 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
panel sequencing
retinal disease
E.II-1
PubMed: Won 2021
family E, individual II:1
M
-
Korea, South (Republic)
Korean
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Paternal (confirmed)
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, (p.Arg1933Ter)
-
RP1_000018
compound heterozygous
PubMed: Mizobuchi 2021
-
rs199879316
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole-exome/whole-genome sequencing
retinal disease
18_JU1701/1
PubMed: Mizobuchi 2021
family 18, individual JU1701/1
M
-
Japan
Japanese
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Parent #2
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, (p.Arg1933Ter)
-
RP1_000018
compound heterozygous
PubMed: Mizobuchi 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole-exome/whole-genome sequencing
retinal disease
19_5275/1
PubMed: Mizobuchi 2021
family 19, individual 5275/1
M
-
Japan
Japanese
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Maternal (confirmed)
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, (p.Arg1933Ter)
-
RP1_000018
compound heterozygous
PubMed: Mizobuchi 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole-exome/whole-genome sequencing
retinal disease
20_JU1W9I/1
PubMed: Mizobuchi 2021
family 20, individual JU1W9I/1
F
-
Japan
Japanese
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Maternal (confirmed)
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, (p.Arg1933Ter)
-
RP1_000018
compound heterozygous
PubMed: Mizobuchi 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole-exome/whole-genome sequencing
retinal disease
21_JU1339/1
PubMed: Mizobuchi 2021
family 21, individual JU1339/1
M
-
Japan
Japanese
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Paternal (confirmed)
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, (p.Arg1933Ter)
-
RP1_000018
compound heterozygous
PubMed: Mizobuchi 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole-exome/whole-genome sequencing
retinal disease
22_JU1947/1
PubMed: Mizobuchi 2021
family 22, individual JU1947/1
M
-
Japan
Japanese
-
-
-
-
1
LOVD
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Parent #2
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
RP1 c.5797C>T, (p.Arg1933Ter)
-
RP1_000018
compound heterozygous
PubMed: Mizobuchi 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG, SEQ
blood
whole-exome/whole-genome sequencing
retinal disease
23_JU1978/1
PubMed: Mizobuchi 2021
family 23, individual JU1978/1
M
-
Japan
Japanese
-
-
-
-
1
LOVD
+/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #2
-
pathogenic
g.55542239C>T
-
c.5797C>T
-
RP1_000018
-
PubMed: Panneman 2023
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
RP-LCA smMIPs sequencing
RP
-
PubMed: Panneman 2023
-
M
-
-
-
-
-
-
-
1
Daan Panneman
+/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Parent #2
-
pathogenic
g.55542239C>T
-
c.5797C>T
-
RP1_000018
-
PubMed: Panneman 2023
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
RP-LCA smMIPs sequencing
RP
-
PubMed: Panneman 2023
-
F
-
-
-
-
-
-
-
1
Daan Panneman
+/.
4
c.5797C>T
r.(?)
p.(Arg1933*)
Both (homozygous)
-
pathogenic
g.55542239C>T
-
c.5797C>T
-
RP1_000018
-
PubMed: Panneman 2023
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
RP-LCA smMIPs sequencing
RP
-
PubMed: Panneman 2023
-
M
-
-
-
-
-
-
-
1
Daan Panneman
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
case unsolved
PubMed: Hitti-Malin 2024
,
Journal: Hitti-Malin 2024
-
-
Germline
-
-
-
-
-
DNA
SEQ
-
smMIP-based 105 iMD/AMD genes
macular dystrophy
071083
PubMed: Hitti-Malin 2024
,
Journal: Hitti-Malin 2024
-
-
-
-
-
-
-
-
-
1
Johan den Dunnen
+/.
-
c.5797C>T
r.(?)
p.(Arg1933Ter)
Unknown
ACMG
pathogenic
g.55542239C>T
g.54629679C>T
-
-
RP1_000018
case unsolved
PubMed: Hitti-Malin 2024
,
Journal: Hitti-Malin 2024
-
-
Germline
-
-
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DNA
SEQ
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smMIP-based 105 iMD/AMD genes
macular dystrophy
071087
PubMed: Hitti-Malin 2024
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Journal: Hitti-Malin 2024
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1
Johan den Dunnen
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