Full data view for gene SHOX

Information The variants shown are described using the transcript reference sequence.

3 entries on 1 page. Showing entries 1 - 3.
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Effect     

Function/GVS     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

P-domain     

Predict-BioInf     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

Country     

Population     

Age at death     

VIP     

Data_av     

Treatment     

Panel size     

Owner     
+/+ - 3 c.394C>G r.(?) p.(Leu132Val) HD CADD: 25 Maternal (confirmed) - pathogenic g.595469C>G g.634734C>G - - SHOX_000020 0/160 control alleles; no dimerization, weak DNA binding; variant co-occurred with CYP26C1 damaging variant p.(Arg378His) in the affected daughter PubMed: Grigelioniene 2000, OMIM:var0004, PubMed: Montalbano 2016 - rs137852554 Germline yes 1/23 patients +FspEI;+MnlI;-AvaI;-BanII;-BsiHKAI;-PspXI;-SacI;-SmlI;-XhoI - - DNA SEQ - - LWD - PubMed: Schneider 2005, {Montalbano 2016 in press} inheritance familial, found in affected mother M - Finland white - - - - 2 Ralph Roeth
+/+ - 3 c.394C>G r.(?) p.(Leu132Val) HD CADD: 25 Paternal (confirmed) - pathogenic g.595469C>G g.634734C>G - - SHOX_000020 0/20 control alleles; no dimerization, weak DNA binding; variant co-occurred with CYP26C1 damaging variant p.(Arg378His) in the affected daughter PubMed: Schneider 2005, PubMed: Montalbano 2016 - rs137852554 Germline - 2/1928 patients +FspEI;+MnlI;-AvaI;-BanII;-BsiHKAI;-PspXI;-SacI;-SmlI;-XhoI - - DNA DHPLC, SEQ - - LWD - PubMed: Schneider 2005, {Montalbano 2016 in press} inheritance familial, father and sib affected - - France white - - - - 3 Ralph Roeth
+/+ - 3 c.394C>G r.(?) p.(Leu132Val) HD CADD: 25 Unknown - pathogenic g.595469C>G g.634734C>G - - SHOX_000020 no dimerization, weak DNA binding; variant co-occurred with CYP26C1 damaging variant p.(Arg378His) in the affected daughter PubMed: Auger et al. 2016 - rs137852554 Germline - 3/55 patients +FspEI;+MnlI;-AvaI;-BanII;-BsiHKAI;-PspXI;-SacI;-SmlI;-XhoI - - DNA SEQ - - LWD - PubMed: Auger 2016 - ? - (France) - - - - - 3 Ralph Roeth
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