Full data view for gene SHOX

Information The variants shown are described using the transcript reference sequence.

12 entries on 1 page. Showing entries 1 - 12.
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Effect     

Function/GVS     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

P-domain     

Predict-BioInf     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

Country     

Population     

Age at death     

VIP     

Data_av     

Treatment     

Panel size     

Owner     
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C - - SHOX_000136 - - - rs778160013 Unknown - - -CviAII;-FatI;-NlaIII - - DNA SEQ - - ISS - - - F no United States Jewish - - - - 1 Johan den Dunnen
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 3/242 control alleles SHOX Lab Heidelberg, unpublished - rs778160013 Germline - 1/1928 patients -CviAII;-FatI;-NlaIII - - DNA SEQ - - LWD - SHOX Lab Heidelberg, unpublished - - - Germany white - - - - 1 Ralph Roeth
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 0/100 control alleles PubMed: Ross 2005 - rs778160013 Germline - 1/34 patients -CviAII;-FatI;-NlaIII - - DNA DHPLC, SEQ - - LWD - PubMed: Ross 2005 inheritance familial, found in cousin - - United States white - - - - 2 Ralph Roeth
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Maternal (confirmed) - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 0/100 control alleles PubMed: Ross 2005, unpublished} - rs778160013 Germline - 21/? patients -CviAII;-FatI;-NlaIII - - DNA SEQ - - ISS - PubMed: Ross 2005; K. H., unpublished inheritance familial, found in affected mother - - United States - - - - - 2 Ralph Roeth
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 - Esoterix, unpublished - rs778160013 Germline - 7/5729 patients -CviAII;-FatI;-NlaIII - - DNA SEQ - - ISS - Esoterix, unpublished - - - United States - - - - - 7 Ralph Roeth
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 0/100 control alleles PubMed: Ross 2005, unpublished} - rs778160013 Germline - 21/? patients -CviAII;-FatI;-NlaIII - - DNA SEQ - - ISS - PubMed: Ross 2005; K. H., unpublished - - - United States - - - - - 20 Ralph Roeth
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 - Bioscientia, unpublished - rs778160013 Germline - 1/? patients -CviAII;-FatI;-NlaIII - - DNA SEQ - - ISS - Bioscientia, unpublished - - - Germany - - - - - 1 Ralph Roeth
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 - - - rs778160013 Germline ? - - - - DNA SEQ - - ISS - - Father shorter (5ft 6in) than his brother and father (5ft 10in). F no United States Jewish - - - - 1 Mitchell E. Geffner
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C NM_006883.2:c.676T>C - SHOX_000136 - PubMed: Sofia Shapiro 2015 - rs778160013 Germline - 3/403 patients -CviAII;-FatI;-NlaIII - - DNA DHPLC, SEQ - - ISS - PubMed: Sofia Shapiro 2015 - - - United States - - - - - 3 Ralph Roeth
-/. - 6b c.676T>C r.(?) p.(*226Argext*22) - CADD: 16 Unknown - benign g.619562T>C g.658827T>C - - SHOX_000136 - PubMed: Hirschfeldova et al. 2017 - rs778160013 Unknown - ?/168 patients -CviAII;-FatI;-NlaIII - - DNA SEQ - - - - PubMed: Hirschfeldova 2017 - - - Czech Republic - - - - - 1 Ralph Roeth
?/. - - c.676T>C r.(?) p.(Ter226ArgextTer22) - - Unknown - VUS g.619562T>C - SHOX(NM_006883.2):c.676T>C (p.*226Rext*22, p.(Ter226ArgextTer22)) - SHOX_000136 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - - c.676T>C r.(?) p.(Ter226ArgextTer22) - - Unknown - likely benign g.619562T>C - SHOX(NM_006883.2):c.676T>C (p.*226Rext*22, p.(Ter226ArgextTer22)) - SHOX_000136 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
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