The CLN3 gene homepage

An NCL gene variant database
General information
Gene symbol CLN3
Gene name ceroid-lipofuscinosis, neuronal 3
Chromosome 16
Chromosomal band p12
Imprinted Unknown
Genomic reference NG_008654.2
Transcript reference NM_001042432.1
Exon/intron information NM_001042432.1 exon/intron table
Associated with diseases CLN, CLN3
Citation reference(s) PubMed: Kousi 2012
Refseq URL Genomic reference sequence
Curators (1) Sara Mole
Total number of public variants reported 644
Unique public DNA variants reported 141
Individuals with public variants 564
Hidden variants 10
Download all this gene's data Download all data
Notes An NCL gene variant database.
Establishment of this gene variant database (LSDB) was supported by the European Community's Seventh Framework Programme (FP7/2007-2013) under grant agreement No 200754 - the GEN2PHEN project.
This database was initially part of the Finnish Disease Resource (FinDis; Polvi 2013: Hum Mutat. 34: 1458-1466). We gratefully acknowledge the support of Juha Muilu acting as curator until 2015.
Date created April 05, 2011
Date last updated October 15, 2021
Version CLN3:211015

Graphical displays and utilities
Graphs Graphs displaying summary information of all variants in the database »
Reading frame checker The Reading-frame checker generates a prediction of the effect of whole-exon changes. Active for: NM_001042432.1.
UCSC Genome Browser Show variants in the UCSC Genome Browser (full view, compact view)
Ensembl Genome Browser Show variants in the Ensembl Genome Browser (full view, compact view)
NCBI Sequence Viewer Show distribution histogram of variants in the NCBI Sequence Viewer

Links to other resources
Homepage URL
HGNC 2074
Entrez Gene 1201
PubMed articles CLN3
OMIM - Gene 607042
OMIM - Diseases CLN3 (lipofuscinosis, ceroid, neuronal, type 3 (CLN3))
GeneCards CLN3
GeneTests CLN3
Orphanet CLN3

Active transcripts




NCBI ID     

NCBI Protein ID     

00000010 16 ceroid-lipofuscinosis, neuronal 3, transcript variant 1 NM_001042432.1 NP_001035897.1 644

Copyright & disclaimer
The contents of this LOVD database are the intellectual property of the respective submitter(s) and curator(s) of the individual records. Individual data entries may indicate which data license applies to that specific record. When no license is listed, no permissions are granted. Any unauthorized use, copying, storage, or distribution of this material without written permission from the curator(s) will lead to copyright infringement with possible ensuing litigation. Copyright © 2011-2021. All Rights Reserved. For further details, refer to Directive 96/9/EC of the European Parliament and the Council of March 11 (1996) on the legal protection of databases.

We have used all reasonable efforts to ensure that the information displayed on these pages and contained in the databases is of high quality. We make no warranty, express or implied, as to its accuracy or that the information is fit for a particular purpose, and will not be held responsible for any consequences arising from any inaccuracies or omissions. Individuals, organizations, and companies that use this database do so on the understanding that no liability whatsoever, either direct or indirect, shall rest upon the data submitter(s), curator(s), or any of their employees or agents for the effects of any product, process, or method that may be produced or adopted by any part, notwithstanding that the formulation of such product, process or method may be based upon information here provided.