Global Variome shared LOVD
ARFGEF1 (ADP-ribosylation factor guanine nucleotide...)
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All individuals with variants in gene ARFGEF1
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
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all entries containing 'Arg' and 'Ser'
|
Text
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!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
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all entries with this field not empty
!=""
Text
!="p.0"
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combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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21 entries on 1 page. Showing entries 1 - 21.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00465923
332969
-
-
M
no
? (unknown)
-
-
-
-
-
ID
Developmental regression, Autistic behavior, Macrotia, Prominent forehead
1
1
Andreas Laner
00465936
patient
PubMed: Teoh 2020
2-generation family, 1 affected, unaffected non-carrier parents
M
-
United States
-
-
-
-
-
seizures
see paper; ..., 6m-seizures, infantile spasms; 3y-generalized convulsions, myoclonic seizures, tonic seizures, atonic seizures, global developmental delay, axial hypotonia, no speech, no meaningful vocalizations, unable to pull to stand, unable to support own weight; no dysmorphic features; EEG hypsarrhythmia, infantile spasms
1
1
Johan den Dunnen
00465937
Pat1
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected, unaffected non-carrier parents
M
no
France
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; severe delay; behavioral problems; psychomotor agitation; moderate intellectual disability; cerebellar ataxia; no neurosensory disorders; MRI thin corpus callosum; wide mouth, high forehead, low-set ears; no epilepsy
1
1
Johan den Dunnen
00465938
Pat2
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected, unaffected non-carrier parents
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; moderate delay; behavioral problems; autism spectrum disorders; mild intellectual disability; no neurological features; no neurosensory disorders; MRI mild myelination delay; frontal bossing, triangular face, facial hypertrichosis, pointed frontal hairline, thick eyebrows, short philtrum, protruding incisor teeth, generalized hirsutism, long face, wide mouth, low-set large ears; no epilepsy
1
1
Johan den Dunnen
00465939
Pat3
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected, unaffected non-carrier parents
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; severe delay; no behavioral problems; Intellectual functions at lower limit; Impaired fine motor skills, slight balance disorder, left laryngeal paralysis; limitation abductionleft eye with strabismus; no neurosensory disorders; MRI occipital meningocele, disrupted superior cerebellar vermis, bilateral asymmetrical nodular heterotopias; no dysmorphic features; no epilepsy
1
1
Johan den Dunnen
00465940
Pat4
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected, unaffected non-carrier parents
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; severe delay; behavioral problems; aggressivity, temper tantrums; moderate intellectual disability; no neurological features; no neurosensory disorders; MRI normal; no dysmorphic features; febrile seizures, generalized tonic–clonic seizures, atonic seizures, myoclonic and absence seizures, drug-resistant epilepsy
1
1
Johan den Dunnen
00465941
Pat5
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected, unaffected non-carrier parents
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; no speech delay; -; behavioral problems; hyperactivity, aggressivity, obsessive compulsive behaviors; no intellectual disability; hypotonia; no neurosensory disorders; MRI normal; no dysmorphic features; generalized tonic–clonic seizures, febrile seizures, myoclonic, atonic, drug-resistant epilepsy
1
1
Johan den Dunnen
00465942
Pat6
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected, unaffected non-carrier parents
M
yes
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; mild delay; behavioral problems; attention deficit–hyperactivity disorder; mild intellectual disability; no neurological features; hyperopia, high astigmatism; MRI normal; generalized tonic–clonic seizures
1
1
Johan den Dunnen
00465943
Fam1Pat7
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 2 affected (father/child)
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; severe delay; behavioral problems; temper tantrums, anger bursts, severe psychomotor agitation, distractibility, attention disorders, enuresis, encopresis; moderate intellectual disability; Impaired fine and gross motor skills, balance disorders, dysarthria; no neurosensory disorders; MRI pineal cyst, low-set cerebellar tonsils; hypotonic long face, wide mouth, large ears, bulbous nose tip; generalized tonic–clonic seizures, febrile seizures, myoclonic, atonic
1
2
Johan den Dunnen
00465944
Fam2Pat8
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 6 affected (2F, 4M), son
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; mild delay; behavioral problems; autism disorders, anxiety, aggressivity; mild intellectual disability; impaired fine motor skills, mild cerebellar ataxia, dysarthria; hyperopia; MRI subcortical white matter T2 signal hyperintensity congruent with myelination delay; high forehead, large ears; no epilepsy
1
6
Johan den Dunnen
00465945
Fam2Pat9
PubMed: Thomas 2021
,
Journal: Thomas 2021
daughter
F
no
-
-
-
-
-
-
NDD
see paper; ..., no motor delay; speech delay; severe delay; behavioral problems; anxiety, attention disorders,; mild intellectual disability; action tremor; hyperopia, astigmatism; MRI subcortical white matter T2 signal hyperintensity congruent with myelination delay; high forehead, bulbous nose tip; no epilepsy
1
1
Johan den Dunnen
00465946
Fam3Pat10
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 3 affected (father2 sons)
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; mild delay; behavioral problems; autism spectrum disorder, hyperactivity; moderate intellectual disability; no neurological features; no neurosensory disorders; brachycephaly, long and thin fingers, plagiocephaly, low-set large ears; no epilepsy
1
3
Johan den Dunnen
00465947
Fam3Pat11
PubMed: Thomas 2021
,
Journal: Thomas 2021
son
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; severe delay; behavioral problems; attention disorder; no intellectual disability; impaired fine motor skills; astigmatism, hyperopia; long and thin fingers, large ears; no epilepsy
1
1
Johan den Dunnen
00465948
Pat12
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; mild delay; behavioral problems; aggressive behavior, alcohol addiction; mild intellectual disability; no neurological features; strabismus; small and low-set ears, long and thin fingers; no epilepsy
1
1
Johan den Dunnen
00465949
Pat13
PubMed: Thomas 2021
,
Journal: Thomas 2021
2-generation family, 1 affected
M
no
-
-
-
-
-
-
NDD
see paper; ..., motor delay; speech delay; severe delay; behavioral problems; oppositional defiant disorder, aggressivity, attention deficit–hyperactivity disorder; mild intellectual disability; no neurological features; mild unilateral hearing impairment; MRI type 1 Arnold-Chiari malformation; no dysmorphic features; absence seizures
1
1
Johan den Dunnen
00465950
Pat1
PubMed: Xu 2022
,
Journal: Xu 2022
2-generation family, 1 affected, unaffected non-carrier parents
M
-
China
-
-
-
-
-
NDD
see paper; ..., speech delay; motor delay; no behavioural problems; intellectual disability; no neurological features; no neurosensory disorders; no facial dysmorphisms; epilepsy; MRI normal
1
1
Johan den Dunnen
00465951
Pat2
PubMed: Xu 2022
,
Journal: Xu 2022
2-generation family, 1 affected, unaffected non-carrier parents
M
-
China
-
-
-
-
-
NDD
see paper; ..., mild speech delay; mild motor delay; behavioural problems; mild intellectual disability; no neurological features; no neurosensory disorders; no facial dysmorphisms; epilepsy; MRI normal
1
1
Johan den Dunnen
00465952
Pat3
PubMed: Xu 2022
,
Journal: Xu 2022
2-generation family, affected mother/son
M
-
China
-
-
-
-
-
NDD
see paper; ..., birth hypoxia asphyxia; moderate speech delay; severe motor delay; autism spectrum disorder; intellectual disability; no neurosensory disorders; no facial dysmorphisms; epilepsy; MRI normal; EEG abnormal; mother has developmental delay and intellectual disability
1
2
Johan den Dunnen
00465953
Pat4
PubMed: Xu 2022
,
Journal: Xu 2022
2-generation family, 1 affected, unaffected non-carrier parents
M
-
China
-
-
-
-
-
NDD
see paper; ..., moderate speech delay; moderate motor delay; no behavioural problems; severe intellectual disability; no neurological features; strabismus; no facial dysmorphisms; epilepsy; MRI normal; EEG abnormal
1
1
Johan den Dunnen
00465954
Pat5
PubMed: Xu 2022
,
Journal: Xu 2022
2-generation family, 1 affected, unaffected non-carrier parents
F
-
China
-
-
-
-
-
NDD
see paper; ..., severe speech delay; severe motor delay; no behavioural problems; severe intellectual disability; no neurological features; no neurosensory disorders; no facial dysmorphisms; epilepsy; MRI abnormal; EEG abnormal
1
1
Johan den Dunnen
00465955
DDD4K.02432
PubMed: DDD 2017
,
Journal: DDD 2017
2-generation family, 1 affected, unaffected non-carrier parents
F
-
United Kingdom (Great Britain)
-
-
-
-
-
NDD
-
1
1
Johan den Dunnen
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