Global Variome shared LOVD
CCDC23 (coiled-coil domain containing 23)
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Global Variome, with Curator vacancy
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All individuals with variants in gene CCDC23
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
12 entries on 1 page. Showing entries 1 - 12.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00303456
Fam1
PubMed: Iqbal 2019
5-generation family, 2 affected sibs (F, M), unaffected heterozygous carrier parents/relatives
F;M
yes
Syria
-
-
-
-
-
NDD
see paper; ...
1
2
Johan den Dunnen
00303457
Fam2
PubMed: Iqbal 2019
4-generation family, 2 affected sisters, unaffected heterozygous carrier parents
F
-
Pakistan
-
-
-
-
-
NDD
see paper; ...
1
2
Johan den Dunnen
00303458
FamA
Verdura ESHG2020 C15.11
3-generation family, 3 affected (F, 2M), unaffected heterozygous carrier parents/relatives
F;M
-
Spain
Basque
-
-
-
-
?
see paper; ..., spastic paraplegia, peripheral neuropathy, verbal apraxia, intellectual disability, no microcephaly
1
3
Johan den Dunnen
00303459
FamB
Verdura ESHG2020 C15.11
2-generation family, 3 affected (3F), unaffected heterozygous carrier parents
F
-
Spain
Basque
-
-
-
-
?
see paper; ..., spastic paraplegia, peripheral neuropathy, verbal apraxia, intellectual disability, no microcephaly
1
3
Johan den Dunnen
00303460
Fam1PatV-6
PubMed: Pagnamenta 2019
4-generation family, 4 affected (3F, M), unaffected heterozygous carrier parents/relatives
F
yes
Pakistan
-
-
-
-
-
NDD
moderate/severe intellectual disability; speech little expressive language, better receptive language (few single words); quiet behaviour; height 4y4m-106.9 cm(50th), 7y7m-122.1 cm (25th); OFC 5y4m 48.5 cm (0.4th); lower limb spasticity with brisk tendon reflexes; delayed gross motor development, walk-24m; MRI showed irregular ventricular margins and a thin corpus callosum; coarse facial features, prominent forehead, epicanthic folds, broad nasal bridge; tapering fingers, short 5th metacarpals; very short 3rd and 4th toes; mirror movements fingers; thick dry curly hair, low anterior hairline, iron deficiency anaemia, muscular ventricular septal defect, mongolian blue spot, long sighted
1
4
Johan den Dunnen
00303461
Fam1PatV-7
PubMed: Pagnamenta 2019
-
F
yes
Pakistan
-
-
-
-
-
NDD
severe intellectual disability; speech little expressive language (few single words); behaviour loses temper, bangs head, cries, screams; height 3y4m 90.7 cm (2nd-9th), 9y10m 131.2 cm (9th-25th); OFC 3y11m 45.2 cm (<0.4th); increased tone in the lower limbs, with pathologically brisk reflexes and extensor plantar responses; delayed gross motor development, walk-24m; MRI showed dysgenic corpus callosum with dysmorphic ventricles; slight prominence of CSF spaces; normal cisterna magna, white matter, deep grey structures and calcification (data not shown); 2y-single episode of status epilepticus, ongoing seizure disorder controlled by AEDs (resolved as teenager); coarse facial features, low anterior hairline; mirror movements fingers; thick dry curly hair, squint, iron deficiency, anaemia
1
1
Johan den Dunnen
00303462
Fam1PatIV-3
PubMed: Pagnamenta 2019
-
F
yes
Pakistan
-
-
-
-
-
NDD
moderate/severe intellectual disability; speech few words; normal behaviour; height 141.3 cm aged 45 years (<0.4th); OFC 45y 56.0 cm (50th-75th) ; no spasticity, walks only with the use of a walking frame, but lower limb tone and reflexes are normal; delayed gross motor development, walk-7y; 13y-14y seizures; coarse facial features; short 3rd, 4th and 5th metacarpals, wasting of the intrinsic muscles of hands with clawing of the fingers; bicuspid aortic valve
1
1
Johan den Dunnen
00303463
Fam1PatIV-4
PubMed: Pagnamenta 2019
-
M
yes
Pakistan
-
-
-
-
-
NDD
moderate/severe intellectual disability; speech little expressive language (few words - 3 word sentences); normal behaviour; height 39y 158.4 cm (0.4th); OFC 39y 55.5 cm (9th-25th); spastic paraparesis with brisk lower limb reflexes and extensor plantar responses; several operations to release contractures at his hips and ankles; delayed gross motor development, walk-5y; seizures as an infant. seizures when young, resolved as teenager; coarse facial features; short thumbs, marked muscle wasting of the small muscles of hands with clawing of his fingers; mirror movements; hypothyroidism
1
1
Johan den Dunnen
00303464
Fam2PatII-2
PubMed: Pagnamenta 2019
2-generation family, 2 affected (F, M), unaffected heterozygous carrier parents/relatives
M
yes
Kuwait
-
-
-
-
-
NDD
intellectual disability; speech few words; normal behaviour; OFC 7y10m 49.7 cm (0.4th); generalized hypertonia predominantly in both lower limbs, easily elicited reflexes, unsteady spastic gait; no gross motor development; MRI brain normal; no facial dysmorphism; mirror movements hand
1
2
Johan den Dunnen
00303465
Fam2PatII-3
PubMed: Pagnamenta 2019
-
F
yes
Kuwait
-
-
-
-
-
NDD
intellectual disability; 6y-speech only few word; normal behaviour; height 2y 79 cm (2nd); OFC 2y 44.5 cm (<0.4th); 6y6m 47.5 cm (<0.4th); Yes (generalized hypertonia predominantly in both lower limbs, ankle clonus, easily elicited reflexes, unsteady spastic gait and toe walking); no gross motor development; MRI showed a thin corpus callosum, dilated ventricles with poor volume of white matter (Fig. 1d); no seizures; no facial dysmorphism, just a right preauricular skin tag
1
1
Johan den Dunnen
00303466
Fam3PatII-1
PubMed: Pagnamenta 2019
2-generation family, 2 affected (F, M), unaffected heterozygous carrier parents/relatives
M
yes
Pakistan
-
-
-
-
-
NDD
intellectual disability; 21y-speech only 10 words; normal behaviour; unable to stand-flexion deformity at hips and knees; OFC 3y 46 cm (<0.4th); spastic diplegia and non-ambulant; delayed gross motor development, walk on knees; MRI brain normal; coarse facial features; 2-4 toe cutaneous syndactyly
1
2
Johan den Dunnen
00303467
Fam3PatII-2
PubMed: Pagnamenta 2019
-
F
yes
Pakistan
-
-
-
-
-
NDD
severe intellectual disability; delayed speech and language development; autistic behaviour; Height 3y6m 96 cm (25th centile); OFC 45 cm (<0.4th); progressive spasticity with delayed gross and fine motor development; delayed gross motor development, walk-14m, needs splints; MRI detected a thin corpus callosum and reduced periventricular white matter bulk with mildly enlarged ventricles (Fig. 1e); hyperpigmentation skin, small café au lait macules
1
1
Johan den Dunnen
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