Global Variome shared LOVD
CHAMP1 (chromosome alignment maintaining phosphopro...)
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All individuals with variants in gene CHAMP1
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
18 entries on 1 page. Showing entries 1 - 18.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00047291
-
PubMed: Hempel 2015
,
Journal: Hempel 2015
-
M
no
Germany
Germany
-
-
-
-
ID
OFC 4y 48cm(-2.5SD); no speech, muscular hypotonia, walk(support)-4y, friendly behaviour, orofacial hypotonia, long face, no epicanthic folds, no upslanting palpebral fissures, short philtrum, open-mouth (salivation), thin/tented upper lip, everted lower lip, high arched palate, pointed chin, no low set ears, strabismus, hyperopia,joint hypermobility, neanatal feeding difficulties, umbilical hernia, decreased pain sensation, no recurrent upper air tract infections; brain-MRI mild brain atrophy, cerebellar cortical dysplasia; birth 40w; weight 3520/-0.4; length 52/-0.2; OFC 33/-2.0; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263)
1
1
Davor Lessel
00047292
-
PubMed: Hempel 2015
,
Journal: Hempel 2015
-
M
no
Netherlands
Dutch
-
-
-
-
ID
no speech, muscular hypotonia, walk(support)-3y, friendly behaviour, no orofacial hypotonia, no long face, epicanthic folds, upslanting palpebral fissures, short philtrum, no open-mouth, tented upper lip, everted lower lip, high arched palate, pointed chin, low set ears, no strabismus, no joint hypermobility, neanatal feeding difficulties, umbilical hernia, no decreased pain sensation, recurrent upper air tract infections; brain-MRI slightly delayed myelination; birth 39w; weight 3,580/0.2;; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263)
1
1
Davor Lessel
00047293
-
PubMed: Hempel 2015
,
Journal: Hempel 2015
-
M
no
Netherlands
Dutch
-
-
-
-
ID
muscular hypotonia, walk(support)-2y6m, friendly behaviour, orofacial hypotonia, long face, no epicanthic folds, upslanting palpebral fissures, short philtrum, open-mouth (salvation), thin/tented upper lip, everted lower lip, no pointed chin, low set ears, strabismus, hyperopia, joint hypermobility, neanatal feeding difficulties, no umbilical hernia, decreased pain sensation, recurrent upper air tract infections; 1y-brain-MRI normal; last examination weight 50/-2.7, lebgth 160/-2.9, OFC 52.2/-3.1; birth 39w; weight 3100/-0.9; length 49/-1.3; OFC (6w) 35.6/-2.1; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263); speech delay (HP:0000750); dysarthria (HP:0001260)
1
1
Davor Lessel
00047294
-
PubMed: Hempel 2015
,
Journal: Hempel 2015
-
F
no
Netherlands
Dutch
-
-
-
-
ID
muscular hypotonia, walk(support)-1y6m, friendly behaviour, orofacial hypotonia, no long face, epicanthic folds, no upslanting palpebral fissures, short philtrum, open-mouth (salvation), thin/tented upper lip, everted lower lip, high arched palate, no pointed chin, no low set ears, no strabismus, hyperopia, no joint hypermobility, neanatal feeding difficulties, no umbilical hernia, decreased pain sensation, recurrent upper air tract infections; 3m-brain-MRI normal; birth 37w; weight 3105/0.3; length 50/1.0; OFC 29.5/-3.1; moderate intellectual disability (HP:0002342); global developmental delay (HP:0001263); speech delay (HP:0000750); dysarthria (HP:0001260)
1
1
Davor Lessel
00047295
-
PubMed: Hempel 2015
,
Journal: Hempel 2015
-
F
no
Germany
German
-
-
-
-
ID
muscular hypotonia, walk(support)-1y8m, friendly behaviour, orofacial hypotonia, long face, epicanthic folds, upslanting palpebral fissures, short philtrum, open-mouth (salvation), thin/tented upper lip, everted lower lip, high arched palate, pointed chin, low set ears, no strabismus, hyperopia, no joint hypermobility, no neanatal feeding difficulties, no umbilical hernia, decreased pain sensation, no recurrent upper air tract infections; 3y-brain-MRI normal; birth 40w; weight 4100/01.5; length 53/0.6; OFC (4w) 35/-0.4; moderate intellectual disability (HP:0002342); global developmental delay (HP:0001263); speech delay (HP:0000750); dysarthria (HP:0001260)
1
1
Davor Lessel
00050147
-
PubMed: Isidor 2016
,
Journal: Isidor 2016
-
F
no
United Kingdom (Great Britain)
-
-
-
-
-
ID
no growth failure, behavioural anomalies, no eye anomalies, no skeletal abnormalities, facial dysmorphism; birth at term; moderate intellectual disability (HP:0002342); global developmental delay (HP:0001263); severe speech delay (HP:0000750)
1
1
Sébastien Küry
00050148
-
PubMed: Isidor 2016
,
Journal: Isidor 2016
healthy younger brother
M
no
United Kingdom (Great Britain)
-
-
-
-
-
ID
no growth failure, normal behaviour, eye anomalies, skeletal abnormalities, facial dysmorphism; birth at term; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263); no speech (HP:0001344)
1
1
Sébastien Küry
00050149
-
PubMed: Isidor 2016
,
Journal: Isidor 2016
-
M
no
United States
-
-
-
-
-
ID
growth failure, behavioural anomalies, no eye anomalies, no skeletal abnormalities, facial dysmorphism?; birth at term; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263); no speech (HP:0001344)
1
1
Sébastien Küry
00050150
-
PubMed: Isidor 2016
,
Journal: Isidor 2016
healthy younger sister
F
no
United Kingdom (Great Britain)
-
-
-
-
-
ID
no growth failure, normal behaviour, eye anomalies, no skeletal abnormalities, facial dysmorphism; birth at term; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263); severe speech delay (HP:0000750)
1
1
Sébastien Küry
00050151
Fam3PatII1;1242500
PubMed: Isidor 2016
,
Journal: Isidor 2016
,
PubMed: Hamdan 2017
-
F
no
United States
-
-
-
-
-
ID
no growth failure, behavioural anomalies, eye anomalies, skeletal abnormalities, facial dysmorphism; birth at term; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263); severe speech delay (HP:0000750)
1
1
Sébastien Küry
00050152
-
PubMed: Isidor 2016
,
Journal: Isidor 2016
-
M
no
France
-
-
-
-
-
ID
growth failure, normal behaviour, eye anomalies, skeletal abnormalities, facial dysmorphism; birth at term; severe intellectual disability (HP:0010864); global developmental delay (HP:0001263); no speech (HP:0001344)
1
1
Sébastien Küry
00050484
-
PubMed: DDDS 2015
,
Journal: DDDS 2015
family, 1 affected
M
-
United Kingdom (Great Britain)
-
-
-
Decipher
-
?
intellectual disability, obstructive sleep apnea, supernumerary nipples, plagiocephaly
1
1
Johan den Dunnen
00050523
-
PubMed: DDDS 2015
,
Journal: DDDS 2015
affected, unknown family members
F
-
United Kingdom (Great Britain)
-
-
-
Decipher
-
?
global developmental delay, joint hypermobility, abnormality of the renal collecting system, abnormality of the central nervous system, incoordination, diastasis recti
1
1
Johan den Dunnen
00308039
Pat18
PubMed: Mahler 2019
2-generation family, 1 affected, unaffected non-carrier parents
-
no
Germany
-
-
-
-
-
?
severe global developmental delay, microcephaly, muscular hypotonia
1
1
Johan den Dunnen
00320139
-
-
-
M
-
-
-
-
-
-
-
?
Intellectual disability (HP:0001249); Global developmental delay (HP:0001263); Intestinal pseudo-obstruction (HP:0004389)
1
1
IMGAG
00435547
Pat84
PubMed: Rots 2023
family, has father
M
-
-
-
-
-
-
-
NDD
see paper; ..., no complications pregnancy/delivery; birth 39w+1d; language/speech delay, babbling but no first words yet; motor delay, not walking; no behavior problems; no use psychiatric drugs; no sleep disturbances; no seizures/epilepsy; no hypotonia; no dystonia; no spasticity; no joint hypermobility; no syndactyly; no vertebral abnormalities; no abnormalities hand/foot/finger; no pectus excavatum; torticollis, lingual frenulum; prominet forehead and nasal roo, pprominent ears; no lip/cleft palate; no hypermetropia/myopia; no strabismus; normal hearing; no recurrent ear infections; no congenital heart disease; no neonatal feeding difficulties; no gastroesophageal reflux; no constipation; no skin hyperlaxity; no genitourinary abnormalities; no cryptorchidism;
1
1
Johan den Dunnen
00448200
Pat45
PubMed: Poli 2024
-
F
-
Chile
-
-
-
-
-
?
global developmental delay; seizure; craniosynostosis; short stature; strabismus; dysmorphic facial features;
1
1
Johan den Dunnen
00466217
342127
-
-
M
no
Bosnia and Herzegovina
-
-
-
-
-
NEDHILD;MRD40
Hypotonia, Delayed gross motor development, Delayed speech and language development, Astigmatism
1
1
Andreas Laner
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