Global Variome shared LOVD
EFEMP1 (EGF containing fibulin-like extracellular m...)
LOVD v.3.0 Build 30b [
Current LOVD status
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Global Variome, with Curator vacancy
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View all diseases associated with gene EFEMP1
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All individuals with variants in gene EFEMP1
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
50 entries on 1 page. Showing entries 1 - 50.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00292796
-
PubMed: Narang 2020
,
Journal: Narang 2020
analysis 2794 individuals (India)
-
-
India
-
-
-
-
-
?
-
1
147
Mohammed Faruq
00304830
-
PubMed: Narang 2020
,
Journal: Narang 2020
analysis 2794 individuals (India)
-
-
India
-
-
-
-
-
?
-
1
4
Mohammed Faruq
00328407
691028
PubMed: Zhou 2018
-
-
-
China
-
-
-
-
-
retinal disease
-
1
1
LOVD
00328408
680766
PubMed: Zhou 2018
-
-
-
China
-
-
-
-
-
retinal disease
-
1
1
LOVD
00335837
-
PubMed: Ramkumar 2017
-
-
-
United States
-
-
-
-
-
retinal disease
-
1
1
LOVD
00362009
Pat12AB
PubMed: Duvvari 2016
patient
-
-
Netherlands
white
-
-
-
-
retinal disease
-
1
1
LOVD
00362696
-
PubMed: Downs 2007
-
-
-
-
-
-
-
-
-
retinal disease
-
1
1
Julia Lopez
00363360
HM704
PubMed: Sun 2015
proband
-
-
China
-
-
-
-
-
retinal disease
-
1
1
LOVD
00363361
HM741
PubMed: Sun 2015
proband
-
-
China
-
-
-
-
-
retinal disease
-
1
1
LOVD
00363383
HM381
PubMed: Sun 2015
proband
-
-
China
-
-
-
-
-
retinal disease
-
1
1
LOVD
00363645
11DG0906
PubMed: Patel 2016
-
-
-
Saudi Arabia
-
-
-
-
-
retinal disease
non-syndromic
1
1
LOVD
00373868
Rp261
PubMed: Zhao 2015
family
-
-
Northern Ireland
-
-
-
-
-
retinal disease
see paper; ...
1
1
LOVD
00375411
RP#002
PubMed: Katagiri 2014
family
-
-
Japan
-
-
-
-
-
retinal disease
see paper; ...
1
1
LOVD
00375478
DonPat1
PubMed: Alapati 2014
-
-
-
United States
-
-
-
-
-
retinal disease
see paper; ...
1
1
LOVD
00375479
DonPat2
PubMed: Alapati 2014
-
-
-
United States
-
-
-
-
-
retinal disease
see paper; ...
1
1
LOVD
00375480
DonPat3
PubMed: Alapati 2014
-
-
-
United States
-
-
-
-
-
retinal disease
see paper; ...
1
1
LOVD
00379417
-
PubMed: Zhou 2011
-
-
-
China
-
-
-
-
-
retinal disease
-
1
1
LOVD
00379418
-
PubMed: Zhou 2011
-
-
-
China
-
-
-
-
-
retinal disease
-
1
1
LOVD
00381811
-
PubMed: Wang-2014
-
-
-
-
-
-
-
-
-
retinal disease
-
1
1
LOVD
00388498
13009597
PubMed: Ellingsford 2018
-
-
-
United Kingdom (Great Britain)
-
-
-
-
-
retinal disease
-
1
1
LOVD
00390939
-
PubMed: Maggi_2021
-
M
-
Switzerland
-
-
-
-
-
retinal disease
-
1
1
LOVD
00390948
-
PubMed: Maggi_2021
-
F
-
Switzerland
-
-
-
-
-
retinal disease
-
1
1
LOVD
00390985
-
PubMed: Maggi_2021
-
F
-
Switzerland
-
-
-
-
-
retinal disease
-
1
1
LOVD
00415631
II:1
PubMed: Matsumoto 2001
-
F
-
-
-
-
-
-
-
retinal disease
progressive visual loss and metamorphopsia more pronounced in the right eye. HerBCVA: counting fingers at 2 feet (RE) and 20/32 (LE).
1
1
LOVD
00415632
III:1
PubMed: Matsumoto 2001
-
F
-
-
-
-
-
-
-
retinal disease
-
1
1
LOVD
00415633
III:3
PubMed: Matsumoto 2001
-
F
-
-
-
-
-
-
-
retinal disease
-
1
1
LOVD
00415634
-
PubMed: Narendran 2005
-
-
-
Australia
-
-
-
-
-
retinal disease
-
1
2
LOVD
00415635
-
PubMed: Narendran 2005
-
-
-
Australia
-
-
-
-
-
retinal disease
-
7
54
LOVD
00415636
-
PubMed: Gerth 2009
-
F
-
-
French/Scottish/Dutch
-
-
-
-
retinal disease
-
1
1
LOVD
00415637
mother of case 1
PubMed: Gerth 2009
-
F
-
-
French/ Scottish/Dutch
-
-
-
-
retinal disease
-
1
1
LOVD
00415638
Family 1:III-1
PubMed: Takeuchi 2010
-
F
-
Japan
Japanese
-
-
-
-
retinal disease
bilateral macular degeneration; progressive distortion of vision and severe vision loss in the left eye; BCVA: 0.08 LE and 1.5 RE; basal laminar drusen and hyperplasia of the RPE in the macular areas in both eyes
1
1
LOVD
00415639
Family 1:II-2
PubMed: Takeuchi 2010
-
F
-
Japan
Japanese
-
-
-
-
retinal disease
BCVA was 1.0 RE and 0.8 LE; innumerable drusen in a radial distribution, large yellowish confluent drusen, RPE alterations, and peripapillary drusen
1
1
LOVD
00415640
Family 1:III-2
PubMed: Takeuchi 2010
-
F
-
Japan
Japanese
-
-
-
-
retinal disease
BCVA was 1.2 in both eyes. Color fundus photographs showed innumerable, small, discrete drusen in a radial pattern and peripapillary drusen in the posterior poles of both eyes
1
1
LOVD
00415641
Family 1:I-1
PubMed: Takeuchi 2010
-
F
-
Japan
Japanese
-
-
-
-
retinal disease
-
1
1
LOVD
00415642
Family A
PubMed: Fu 2007
Stone 1999
-
-
-
-
-
-
-
-
retinal disease
-
1
10
LOVD
00415643
Family B - III:1/III:2
PubMed: Fu 2007
parents of IV
M;F
yes
India
-
-
-
-
-
retinal disease
-
1
2
LOVD
00415644
Family B - IV:1
PubMed: Fu 2007
older brother
M
yes
India
-
-
-
-
-
retinal disease
severe phenotype (retina demonstrated drusen extending beyond the posterior pole with associated retinal degeneration)
1
1
LOVD
00415645
Family B - IV:2
PubMed: Fu 2007
-
M
yes
India
-
-
-
-
-
retinal disease
severe phenotype
1
1
LOVD
00415646
II:11
PubMed: Zhang 2014
-
F
-
China
Chinese
-
-
-
-
retinal disease
severe vision loss in the right eye. VA: hand motion RE 20/32 LE; Innumerable radical drusen, confluent drusen, CNV, and RPE changes (OU)
1
1
LOVD
00415647
II:2
PubMed: Zhang 2014
-
F
-
China
Chinese
-
-
-
-
retinal disease
decreased vision in the left eye; BCVA:20/25RE and 20/50 LE; focal confluent drusen aggregated on the macular (left eye) and juxtamacular region (right eye); Confluent drusen aggregated on the macular (OS) and juxtamacular area (OD)
1
1
LOVD
00415648
II:4
PubMed: Zhang 2014
-
M
-
China
Chinese
-
-
-
-
retinal disease
blurred and distorted vision; BCVA: 20/80 in the right eye and 20/32 in the left eye; innumerable drusen in a radial pattern and peripapillary drusen in the posterior poles of both eyes
1
1
LOVD
00415649
II:9
PubMed: Zhang 2014
-
F
-
China
Chinese
-
-
-
-
retinal disease
BCVA: 20/32 RE - 20/25 LE
1
1
LOVD
00415650
II:15
PubMed: Zhang 2014
-
M
-
China
Chinese
-
-
-
-
retinal disease
BCVA: 20/200 RE - 20/63 LE; Confluent drusen, peripapillary drusen, CNV and RPE changes (OU), radical drusen (OD)
1
1
LOVD
00415651
III:4
PubMed: Zhang 2014
-
M
-
China
Chinese
-
-
-
-
retinal disease
BCVA: 20/16 RE - 20/16 LE; Discrete drusen
1
1
LOVD
00415652
I:1, I:4, II:5, II:7, II:10
PubMed: Mackay 2015
-
-
-
-
African-American
-
-
-
-
retinal disease
significantly elevated intra ocular pressure (IOP) >30 mm Hg with consistent visual field and/or optic nerve abnormalities.
1
5
LOVD
00415653
patient
PubMed: Zhang 2018
-
F
-
China
Chinese
-
-
-
-
retinal disease
impaired visual acuity for 10 years especially in the right eye with deterioration for 5 months; BCVA(R/L):5.0/5.1; IOP(R/L): 17/18mmHg; the remarkable diffuse pinpoint or drusen-like speckle yellow white lesions affected the posterior fundus, with varying degrees of retina/retinal pigment epithelium (RPE)/choroid atrophy around the disc
1
1
LOVD
00415654
brother
PubMed: Zhang 2018
-
M
-
China
Chinese
-
-
-
-
retinal disease
BCVA of 5.0 in both eyes; diffuse pinpoint yellow white deposits throughout the macular and peripapillary area with honeycomblike pigmentary changes around the disc; hyperreflective thickening beneath the pigmentary epithelium accompanied by wavy uplift
1
1
LOVD
00415655
mother
PubMed: Zhang 2018
-
F
-
China
Chinese
-
-
-
-
retinal disease
poor visual acuity for at least 20 years, especially at nighttime; BCVA of the right eye FC/10 cm, and the left eye 4.0; corneal opacity in both eyes and the fundus could not be observed clearly; OCT showed granular cloudiness, and corneal endothelium detachment in the peripheral part; thickening in the posterior wall of both eyeballs
1
1
LOVD
00447633
STGD-447
PubMed: Weisschuh 2024
patient, no family history
F
-
Germany
-
-
-
-
-
?
-
1
1
Johan den Dunnen
00460984
-
-
-
-
-
Netherlands
-
-
-
-
-
?
-
1
1
Tjakko van Ham
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