Global Variome shared LOVD
PIGN (phosphatidylinositol glycan anchor biosynthes...)
LOVD v.3.0 Build 30b [
Current LOVD status
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Curator:
Philippe Campeau
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All individuals with variants in gene PIGN
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
38 entries on 1 page. Showing entries 1 - 38.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00016532
-
PubMed: Maydan 2011
seven affected family members
-
yes
Israel
Arabic
-
-
-
-
MCAHS1;GPIBD3
developmental delay, dysmorphic features, multiple congenital anomalies involving the cardiac, genitourinary and gastrointestinal systems; severe neurological impairment with chorea and seizures leading to early death
1
7
Philippe Campeau
00024935
-
PubMed: Brady 2014
affected fetus, pregnancy terminated 16w gestation; unaffected heterozygous carrier parents
-
yes
(Belgium)
Africa, north
<00y00m00d
-
-
-
MCAHS1;GPIBD3
multiple congenital anomalies including bilateral diaphragmatic hernia, cardiovascular anomalies, segmental renal dysplasia, facial dysmorphism, cleft palate, oligodactyly
1
1
Philippe Campeau
00024936
-
PubMed: Ohba 2014
2-generation family, 2 affected sibs (borther, sister) and unaffected heterozygous carrier parents
-
no
Japan
-
<0d
-
-
-
MCAHS1;GPIBD3
see paper; congenital anomalies, developmental delay, hypotonia, epilepsy, progressive cerebellar atrophy
2
2
Philippe Campeau
00050538
-
PubMed: DDDS 2015
,
Journal: DDDS 2015
family, 1 affected
F
-
United Kingdom (Great Britain)
-
-
-
Decipher
-
?
microcephaly, muscular hypotonia, short philtrum, upslanted palpebral fissure
1
1
Johan den Dunnen
00063836
-
PubMed: McInerney-Leo 2016
-
?
no
-
Scandinavian
-
-
-
-
FRNS
Fryns syndrome diagnosed prenatally
2
1
Aideen McInerney-Leo
00063837
-
PubMed: McInerney-Leo 2016
-
?
?
Iraq
-
-
-
-
-
FRNS
-
1
1
Aideen McInerney-Leo
00103742
SUDS006
PubMed: Neubauer 2018
,
Journal: Neubauer 2018
-
-
-
Switzerland
Europe
07y
-
-
-
SUD
SUD, SUDEP
1
1
Cordula Haas
00146559
-
-
-
F
-
(Germany)
-
-
-
-
-
?
Global developmental delay (HP:0001263); Language impairment (HP:0002463); Seizures (HP:0001250); Microcephaly (HP:0000252)
1
1
IMGAG
00150154
26539891-FamBAB5703
PubMed: Karaca 2015
-
-
-
-
-
-
-
family structure in paper
-
?
intellectual diability, NORMAL MRI, seizures, developmental delay, CP
1
1
Johan den Dunnen
00155037
-
PubMed: Couser 2015
-
M
no
-
Mexican American
-
-
-
-
MCAHS1;GPIBD3
-
2
1
Philippe Campeau
00155038
Patient_1
PubMed: Fleming 2016
-
F
no
-
white
-
-
-
-
-
-
2
2
Philippe Campeau
00155039
Patient_2
PubMed: Fleming 2016
-
F
no
-
white
-
-
-
-
-
-
2
1
Philippe Campeau
00155040
Patient_3
PubMed: Fleming 2016
-
F
-
-
African American
-
-
-
-
-
-
2
1
Philippe Campeau
00155041
Patient_4
PubMed: Fleming 2016
-
F
-
-
white - African American
-
-
-
-
-
-
2
1
Philippe Campeau
00155042
-
PubMed: Khayat 2016
-
F
yes
-
Israeli–Arab
-
-
-
-
MCAHS1;GPIBD3
-
1
1
Philippe Campeau
00155043
Patient_2
PubMed: Jezela-Stanek 2016
-
F
no
-
-
-
-
-
-
-
-
2
1
Philippe Campeau
00155044
-
PubMed: Thiffault 2017
-
M
-
-
-
-
-
-
-
-
-
2
1
Philippe Campeau
00163766
Patient_1
PubMed: Alessandri 2018
-
M
no
Reunion
-
00y00m08d
-
-
-
FRNS
-
1
2
Philippe Campeau
00163767
Patient_2
PubMed: Alessandri 2018
-
F
no
Reunion
-
-
-
-
-
FRNS
-
1
1
Philippe Campeau
00163768
Patient_3
PubMed: Alessandri 2018
-
F
no
Reunion
-
-
-
-
-
FRNS
-
1
1
Philippe Campeau
00163769
Patient_4
PubMed: Alessandri 2018
-
F
no
Mayotte
-
-
-
-
-
FRNS
-
1
1
Philippe Campeau
00163771
Patient_5
PubMed: Alessandri 2018
-
F
yes
-
North African
00y00m02d
-
-
-
FRNS
-
1
2
Philippe Campeau
00163773
Patient_6
PubMed: Alessandri 2018
-
M
yes
-
North African
-
-
-
-
FRNS
-
1
1
Philippe Campeau
00163931
259633
PubMed: Pagnamenta 2017
-
F
no
-
White British white
-
-
-
-
epilepsy
-
2
1
Philippe Campeau
00163932
-
PubMed: Nakagawa et al.2015
-
M
no
Japan
-
-
-
-
-
epilepsy, ID
-
2
1
Philippe Campeau
00183682
27620904-Pat27
PubMed: Martinez 2017
,
Journal: Martinez 2017
-
-
-
Spain
-
-
-
-
-
ID
-
2
1
Johan den Dunnen
00207535
Patient
PubMed: Xu et al., 2017
-
M
-
China
Chinese
>00y04m
-
-
-
MCAHS1;GPIBD3
epilepsy, hypotonia, developmental delay, accompanied by nearly normal laboratory test results
2
1
Philippe Campeau
00213053
Fam1_Case1
PubMed: Thuresson et al. 2018
-
F
yes
-
-
-
-
-
-
MCAHS1;GPIBD3
Severe ID (no social interaction or speech), severe hypotonia, epilepsy/focal seizures. Thin corpus callossum, cerebellar atrophy, increased cerebrospinal fluid spaces, visual impairment (pathological VEP), PEG feeding. Normal serum alkaline phosphatase levels. Appearance: Microcephaly (OFC −4SD), round face, low anterior hairline, broad nasal bridge, high-arched palate, small chin, slender feet and hirsutism. Scoliosis. Dry skin, peeling on feet.
1
1
Philippe Campeau
00213134
Fam1, Case2
PubMed: Thuresson et al., 2018
-
M
yes
-
-
-
-
-
-
MCAHS1;GPIBD3
Severe ID (no social interaction or speech), severe hypotonia, epilepsy/focal seizures. Thin corpus callossum, PEG feeding. Normal serum alkaline phosphatase levels. Appearance: Bitemporal narrowing, broad nasal bridge, large ears, thin upper-vermillion and a smooth, long philtrum. Scoliosis. Dry skin, peeling on feet.
1
1
Philippe Campeau
00274143
Pat6
PubMed: Pronicka 2016
-
F
-
Poland
-
-
-
-
-
?
mitochondrial disease criteria score 4
2
1
Johan den Dunnen
00291995
-
PubMed: Narang 2020
,
Journal: Narang 2020
analysis 2794 individuals (India)
-
-
India
-
-
-
-
-
?
-
1
4
Mohammed Faruq
00291996
-
PubMed: Narang 2020
,
Journal: Narang 2020
analysis 2794 individuals (India)
-
-
India
-
-
-
-
-
?
-
1
24
Mohammed Faruq
00314861
Trio7
PubMed: Zhu 2015
-
F
-
Israel
-
-
-
-
-
?
Epileptic encephalopathy, myoclonic jerks from day 1, profound intellectual disability, cardiomyopathy, cortical blindness, tracheostomy, PEG feeding, hydronephrosis, progressive cerebellar and cerebral atrophy, and leukoencephalopathy.
2
1
Johan den Dunnen
00374806
S-2534
PubMed: Ganapathy 2019
-
-
-
India
-
-
-
-
-
?
-
2
1
Johan den Dunnen
00386391
187571
-
-
M
yes
-
Arabian
-
-
-
-
MCAHS1;GPIBD3
Omphalocele, Hydronephrosis, Echogenic fetal bowel, Increased nuchal translucency, Dextrocardia, Abnormality of ductus venosus blood flow
1
1
Andreas Laner
00401573
188P
-
-
F
no
Spain
-
-
-
-
-
ID
-
2
1
Alejandro Brea-Fernández
00427981
A040
PubMed: Bournazos 2022
family, affected 2 affected fetuses)
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Australia
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termination of pregnancy because of multiple congenital anomalies (diaphragmatic defect, pulmonary hypoplasia, cardiovascular malformation, genital malformation, absent olfactory bulbs, absent 12th ribs)
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2
Johan den Dunnen
00452329
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F
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- (not applicable)
white
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HP:0001252, HP:0001344, HP:0000297, HP:0000486, HP:0000218, HP:0012428
2
1
Marketa Wayhelova
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