
 Individual ID
|

 ID_report
|

 Reference
|
 Remarks
|

 Gender
|

 Consanguinity
|

 Country
|

 Population
|

 Age at death
|

 VIP
|

 Data_av
|

 Treatment
|

 Disease
|

 Phenotype details
|

 Variants
|

 Panel size
|

 Owner
|
00265907 |
PatD12 |
PubMed: Cummings 2017 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
MD |
- |
2 |
1 |
Johan den Dunnen |
00289497 |
- |
PubMed: Narang 2020, Journal: Narang 2020 |
analysis 2794 individuals (India) |
- |
- |
India |
- |
- |
- |
- |
- |
? |
- |
1 |
90 |
Mohammed Faruq |
00289498 |
- |
PubMed: Narang 2020, Journal: Narang 2020 |
analysis 2794 individuals (India) |
- |
- |
India |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Mohammed Faruq |
00289499 |
- |
PubMed: Narang 2020, Journal: Narang 2020 |
analysis 2794 individuals (India) |
- |
- |
India |
- |
- |
- |
- |
- |
? |
- |
1 |
2 |
Mohammed Faruq |
00289500 |
- |
PubMed: Narang 2020, Journal: Narang 2020 |
analysis 2794 individuals (India) |
- |
- |
India |
- |
- |
- |
- |
- |
? |
- |
1 |
28 |
Mohammed Faruq |
00289501 |
- |
PubMed: Narang 2020, Journal: Narang 2020 |
analysis 2794 individuals (India) |
- |
- |
India |
- |
- |
- |
- |
- |
? |
- |
1 |
6 |
Mohammed Faruq |
00304145 |
- |
PubMed: Narang 2020, Journal: Narang 2020 |
analysis 2794 individuals (India) |
- |
- |
India |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Mohammed Faruq |
00306113 |
- |
- |
- |
F |
no |
China |
- |
- |
- |
- |
- |
EDS5 |
HP:0000238;HP:0001252 |
2 |
1 |
Li Ma |
00306190 |
88 |
- |
- |
F |
- |
- |
- |
- |
- |
- |
- |
EDSCV |
- |
2 |
1 |
Sha Hong |
00318044 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 variants, c.169C>T and the 15-bp deletion at position c.1123_1137, are both incorrectly described in {PMID10686424:Yeowell et al., 2000}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession M98252. The patient died at the age of 14 due to an arterial rupture.This patient is also described as Cell Line 716 by {PMID10874315:Yeowell et al., 2000}. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318045 |
- |
PubMed: Heikkinen et al., 1999 |
- |
- |
- |
United Kingdom (Great Britain) |
British |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318046 |
P9 |
PubMed: Micha et al., 2019 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318047 |
P1 |
PubMed: van Dijk et al., 2017 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318048 |
P2 |
PubMed: Rohrbach et al., 2011 |
- |
- |
- |
Serbia |
Serbian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318049 |
- |
PubMed: Huang et al., 2009 |
A study by {PMID19442614:Huang et al., 2009} reported a significant genotypic/allelic association between the polymorphism and bone mineral density within the chinese population. {PMID16758144:Tasker et al., 2006} also observed a weak association between this SNP and spinal bone mineral density. |
- |
- |
- |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Raymond Dalgleish |
00318050 |
- |
PubMed: Tasker et al., 2006 |
A study by {PMID16758144:Tasker et al., 2006} found an association between this PLOD1 variant and bone mineral density for the lumbar spine in a cohort of 678 Scottish women. A similar association is also reported in {PMID17390085:Yamada et al., 2007} found within the Japanese population. Both studies have incorrectly described the variant as 386G>A. |
- |
- |
- |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Raymond Dalgleish |
00318051 |
- |
PubMed: Tasker et al., 2005 |
The variant is shown to be associated with decreased lumbar spine bone mineral density measurements, but this only occurs when the variant is heterozygous, not homozygous, in the patient. The authors incorrectly described this variant as G386A, and incorrectly described it as causing a change in codon 99. |
- |
- |
Scotland |
Scottish |
- |
- |
- |
- |
? |
Low bone mineral density, |
1 |
1 |
Raymond Dalgleish |
00318052 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Raymond Dalgleish |
00318053 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 variants are incorrectly described as 450T>A and 1003C>T in {PMID10874315:Yeowell et al., 2000}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252. |
- |
- |
United States |
North American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318054 |
P10 |
PubMed: Rohrbach et al., 2011 |
The splice-site variant in this patient is predicted to result in skipping of exon 4. |
- |
- |
Spain |
Spanish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318055 |
P8 |
PubMed: Micha et al., 2019 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318056 |
- |
PubMed: Yeowell and Walker, 1997 |
The paternally inherited variant is incorrectly described as c.1557C>G in {PMID9220536:Yeowell and Walker, 1997}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252.The patient's unaffected younger sibling was one of the first individuals to have a prenatal assessment of EDS VI by mutational anaylsis. This is reported in {PMID9893157:Yeowell and Walker, 1999}; the outcome of the assessment revealed the foetus had inherited the maternal allele containing the splice-site mutation and a normal non-mutated allele from the father. Although a carrier of this disease, the individual was born healthy.The patient is also described as cell line 996 by {PMID10874315:Yeowell et al., 2000}. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318057 |
Family 1 |
PubMed: Abdalla et al., 2015 |
The parents are first cousins. |
- |
- |
Egypt |
Egyptian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318058 |
- |
PubMed: Spotila et al., 2003 |
A study by {PMID14565595:Spotila et al., 2003} found an association between this SNP in the PLOD1 gene and bone mineral density in the lumbar spine and femoral neck among a population of European descent. |
- |
- |
- |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Raymond Dalgleish |
00318059 |
P2 |
PubMed: van Dijk et al., 2017 |
The technique used was the custom NGS Gene panel. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318060 |
- |
PubMed: Shin et al., 2020 |
Compound heterozygous variants resulting in a kyphoscoliotic EDS phenotype were found in two korean siblings. The technique used was the custom NGS Gene panel. |
- |
- |
Korea |
Korean |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318061 |
- |
PubMed: Hyland et al., 1992 |
According to the pedigree in figure 3, the probands are actually the second (H.A.) and fourth (N.A.) children in the family, rather than the third and fifth, as reported. The parents are first cousins. |
- |
- |
- |
Turkish(?) |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318062 |
P6 |
PubMed: Giunta et al., 2005b |
Patient has consanguineous parents. The PLOD1 variant is incorrectly described as c.845C>T in {PMID15979919:Giunta et al., 2005b}. The correct variant description has been confirmed with the authors. |
- |
- |
- |
Arab |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318063 |
P1 |
PubMed: Giunta et al., 2005a |
The parents of P1 are first cousins. The PLOD1 variant is incorrectly described as c.954CGA>TGA in {PMID15666309:Giunta et al., 2005a}. |
- |
- |
- |
Arab |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318064 |
P2 |
PubMed: Giunta et al., 2005a |
The patient has first cousin parents. The mutation is incorrectly described as c.954CGA>TGA in {PMID15666309:Giunta et al., 2005a}. |
- |
- |
- |
Arab |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318065 |
P3 |
PubMed: Giunta et al., 2005a |
P3 has first cousin parents and is a second cousin to P2 in {PMID15666309:Giunta et al., 2005a}. The PLOD1 variant is incorrectly described as c.954CGA>TGA in the paper. |
- |
- |
- |
Arab |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318066 |
P4 |
PubMed: Giunta et al., 2005a |
The parents of P4 are first cousins. The PLOD1 variant is incorrectly described as c.954CGA>TGA in {PMID15666309:Giunta et al., 2005a}. The patient has also been previously reported as case 1 in {PMID9152832:al-Gazali et al., 1997}, with Nevo Syndrome. |
- |
- |
- |
Arab |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318067 |
P5 |
PubMed: Giunta et al., 2005a |
P5 is the first child of distantly related parents and has an affected sister reported as P6 in {PMID15666309:Giunta et al., 2005a}. The affected sibling harbours the same variant. There is variability in the phenotype as P6 is diagnosed with Nevo Syndrome.The PLOD1 variant is incorrectly described as c.954CGA>TGA in {PMID15666309:Giunta et al., 2005a}. The patient has also been previously reported as case 2 in {PMID9152832:al-Gazali et al., 1997}, with Nevo Syndrome. |
- |
- |
- |
Arab |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318068 |
- |
PubMed: Pajunen at al., 1998 |
The patient's parents are related by blood; the father and maternal grandfather of the patient are cousins.This patient was mentioned, in passing, in the introduction of {PMID8981946:Heikkinen et al., 1997}. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318069 |
P1 |
PubMed: Giunta et al., 2005b |
P1 has consanguineous parents and also has a female sibling who is more severly affected. The PLOD1 variant is incorrectly described as c.1067_1846dup in {PMID15979919:Giunta et al., 2005b}. The actual variant details have been confirmed with the authors.The patient is clinically described as patient O.A.in {PMID9714013:Jarisch et al., 1998}. An affected sibling of the patient, M.A., is also described in {PMID9714013:Jarisch et al., 1998}. Both siblings are affected with both EDS VI and Cystic Fibrosis. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318070 |
P3 |
PubMed: Giunta et al., 2005b |
The consanguinity of parents of the patient is unknown. The PLOD1 variant is incorrectly described as c.1067_1846dup in {PMID15979919:Giunta et al., 2005b}. The actual variant details have been confirmed with the authors. |
- |
- |
Albania |
Albanian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318071 |
P2 |
PubMed: Giunta et al., 2005b |
The PLOD1 variant is incorrectly described as c.1067_1846dup in {PMID15979919:Giunta et al., 2005b}. The actual variant details have been confirmed with the authors. |
- |
- |
Germany |
German |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318072 |
P4 |
PubMed: Giunta et al., 2005b |
The patient has consanguineous parents. The PLOD1 variant is incorrectly described as c.1067_1846dup in {PMID15979919:Giunta et al., 2005b}. The actual variant details have been confirmed with the authors. |
- |
- |
Bosnia and Herzegovina |
Bosnian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318073 |
P5 |
PubMed: Giunta et al., 2005b |
The paternal duplication variant was published by {PMID8981946:Heikkinen et al., 1997} (presumably as patient AB) whereas the maternal mutation remained undetectable at that time.The maternal variant is incorrectly described as c.1253delC in {PMID15979919:Giunta et al., 2005b}. The protein effect is also incorrect described in the same paper as p.Ile454IlefsX2. The paternal variant is incorrectly described as c.1067_1846dup in {PMID15979919:Giunta et al., 2005b}. The actual variant details have been confirmed with the authors. |
- |
- |
Bosnia and Herzegovina |
Bosnian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318074 |
- |
PubMed: Heikkinen et al., 1997 |
The parents of the patient are first cousins. There are two affected members in the family. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318075 |
- |
PubMed: Heikkinen et al., 1997 |
The parents of the patient are first cousins. The patient has two clinically healthy sisters, of whom one was found to be a carrier for the duplicated allele in an enzyme assay reported in {PMID8981946:Heikkinen et al., 1997}. |
- |
- |
Iran |
Iranian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318076 |
- |
PubMed: Heikkinen et al., 1997 |
There are two affected members in the family. |
- |
- |
United States |
American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318077 |
- |
PubMed: Heikkinen et al., 1997 |
curated: RWMD 16/08/2011 |
- |
- |
Russia |
Russian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318078 |
P1 |
PubMed: Brinckmann et al., 1998 |
The PLOD1 variant is incorrectly described as duplication of the nucleotide 1176-1955 in {PMID9617436:Brinckmann et al., 1998}. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318079 |
P3 |
PubMed: Brinckmann et al., 1998 |
The patient was an adopted turkish girl. The mutation is incorrectly described as a duplication in the nucleotide 1176-1955 in {PMID9617436:Brinckmann et al., 1998}. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318080 |
- |
PubMed: Yeowell et al., 2005 |
The patient is the first child of healthy consanguineous parents. The patient also suffers from cystic malformations of the meninges which is described in {PMID14872341:Brunk et al., 2004}. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318081 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 substitution variant is incorrectly described as 2032C>T in {PMID10874315:Yeowell et al., 2000}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252.A prenatal diagnosis on the patient's male sibling was carried out. This too is reported in {PMID10874315:Yeowell et al., 2000} and the outcome of the assessment revealed that the fetus had inherited the mutated paternal allele and a normal non-mutated allele from the mother. Although a carrier of this disease, the individual was born healthy. |
- |
- |
United States |
North American |
- |
- |
- |
- |
EDS, EDSVASC |
- |
2 |
1 |
Raymond Dalgleish |
00318082 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 substitution variant is incorrectly described as 1557C>G in {PMID10874315:Yeowell et al., 2000}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252. |
- |
- |
United States |
North American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318083 |
- |
PubMed: Pousi et al., 1994 |
This patient was originally analyzed and clinically described by {PMID4373475:Sussman et al., 1974}. This patient also has an affected brother, described as Case 2 in {PMID4373475:Sussman et al., 1974}. The patient is also mentioned subsequently by {PMID8981946:Heikkinen et al., 1997} clarifying the ethnic origin. |
- |
- |
United States |
white (American) |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318084 |
- |
PubMed: Heikkinen et al., 1997 |
- |
- |
- |
Germany |
German |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318085 |
- |
PubMed: Hautala et al., 1993 |
The sister of the patient also harbours the same variant and she is described as GM01791 in {PMID8449506:Hautala et al., 1993}. The two siblings are also clinically reported in {PMID5016372:Pinnell et al., 1972} and {PMID4342967:Krane et al., 1972}. The father of the patients is of English-Irish ancestry and the mother is a mixture of Cherokee Indian, Welsh and Dutch. DNA from neither parent is available for study. In {PMID8449506:Hautala et al., 1993}, the nucleotide position of the variant is incorrectly described as 1176 to 1955. The patient is also mentioned subsequently by {PMID8981946:Heikkinen et al., 1997} giving the ethnic origin. |
- |
- |
United States |
American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318086 |
- |
PubMed: Heikkinen et al., 1997 |
The sequence variant of PLOD1 gene in the other allele of the patient is unknown. |
- |
- |
United States |
American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318087 |
P1 |
PubMed: Rohrbach et al., 2011 |
- |
- |
- |
Macedonia |
Macedonian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318088 |
P4 |
PubMed: Rohrbach et al., 2011 |
- |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318089 |
Family 3 |
PubMed: Abdalla et al., 2015 |
The parents are first cousins. |
- |
- |
Egypt |
Egyptian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318090 |
Family 4 |
PubMed: Abdalla et al., 2015 |
The parents are first cousins. |
- |
- |
Egypt |
Egyptian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318091 |
- |
PubMed: Sakai et al., 2011 |
The technique used was the custom NGS Gene panel. |
- |
- |
Japan |
Japanese |
- |
- |
- |
- |
? |
Aortic aneurysms and/or dissection, |
1 |
1 |
Raymond Dalgleish |
00318092 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 variant is incorrectly described as 1003C>T in {PMID10874315:Yeowell et al., 2000}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252. |
- |
- |
United States |
North American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318093 |
P9 |
PubMed: Rohrbach et al., 2011 |
- |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318094 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 15-bp deletion and c.1095C>T variants are both incorrectly described in {PMID10686424:Yeowell et al., 2000}. This is due to incorrect use use of an alternative incomplete PLOD1 mRNA sequence: GenBank accession no. M98252.The c.1095C>T variant creates a cryptic splice site resulting in loss of the last 4 bases of exon 10 or skipping of exon 10.This patient is also described as Cell Line 959 by {PMID10874315:Yeowell et al., 2000}. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318095 |
P5 |
PubMed: Rohrbach et al., 2011 |
The c.1095C > T transition in exon 10 is expected to activate a cryptic splice site within exon 10 which would promote aberrant splicing, shift of the open reading frame and premature stop at codon 386. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318096 |
- |
- |
The patient had a positive family history: her younger sister died at 9 years because of spontaneous abdominal aortic rupture. Urinary pyridinoline analysis showed a significantly increased lysyl-pyridinoline to hydroxylysyl-pyridinoline (LH/HP).The technique used was the custom NGS Gene panel. |
- |
- |
- |
white |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Anne Legrand |
00318097 |
- |
PubMed: Sakai et al., 2011 |
The technique used was the custom NGS Gene panel. |
- |
- |
Japan |
Japanese |
- |
- |
- |
- |
? |
Aortic aneurysms and/or dissection, |
1 |
1 |
Raymond Dalgleish |
00318098 |
- |
PubMed: Giunta et al., 2009 |
The unequal recombination ocurring between the two palindromic AGCT sequences are incorrectly described as ACGT in {PMID19320025:Giunta et al., 2009}. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318099 |
- |
PubMed: Spotila et al., 2003 |
A study by {PMID14565595:Spotila et al., 2003} found an assosiation between this SNP in the PLOD1 gene and bone mineral density in the lumbar spine and femoral neck among a population of European descent. The position of the SNP is incorrectly described in the paper as T1406C. This is due to use of an alternative mRNA sequence for PLOD1: NM_000302.1. |
- |
- |
- |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Raymond Dalgleish |
00318100 |
P12 |
PubMed: Rohrbach et al., 2011 |
A personal communication from one of the authors reveals that the underlying cDNA-level variant is c.1255dup which implies that the published protein-level description of p.(Trp419Leufs*48) for the this patient is incorrect. |
- |
- |
Iraq |
Iraqi |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318101 |
- |
PubMed: Kariminejad et al., 2010. Iran J Pediatr 20(3):358-362 |
The patient is the first child of parents who are cousins once removed. This patient is the one reported by {PMID19320025:Giunta et al., 2009} as HM080082. |
- |
- |
Iran |
Iranian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318102 |
- |
PubMed: Giunta et al., 2009 |
In {PMID19320025:Giunta et al., 2009}, the reference sequence (NM_000302.2) has been incorrectly described as NM_000303.2. Only one variant has been reported for this patient. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318103 |
- |
PubMed: Walker et al., 2005 |
The patient is a daugther of consanguineous parents. The PLOD1 variant is incorrectly described as 1360T>G in {PMID15854030:Walker et al., 2005}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318104 |
- |
PubMed: Yiş et al., 2008 |
The patient is the third child of consanguineous parents. The PLOD1 variant is incorrectly described as c.1360T>G by the authors. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession M98252. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318105 |
P7 |
PubMed: Giunta et al., 2005b |
The consanguinity of parents of the patient is unknown. The PLOD1 variant is incorrectly described as c.1144delC in {PMID15979919:Giunta et al., 2005b}. The protein effect is also incorrect described in the same paper as p.Ile454IlefsX2. The actual variant details have been confirmed with the authors. |
- |
- |
Greece |
Greek |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318106 |
- |
PubMed: Salvoura et al., 2006 |
The patient's parents are probably related, although consanguinity was not mentioned. The protein effect is incorrect described in {PMID17100196:Salvoura et al., 2006} as p.Ile454fsX2. |
- |
- |
Albania |
Albanian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318107 |
Patient IV:3 |
PubMed: Gok et al., 2012 |
The patient is the third child of non-consanguineous Turkish parents. He has two elder male siblings who did not display symptoms of kyphoscoliotic EDS. |
- |
- |
Turkey |
Turkish |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318108 |
- |
PubMed: Sakai et al., 2011 |
The technique used was the custom NGS Gene panel. |
- |
- |
Japan |
Japanese |
- |
- |
- |
- |
? |
Aortic aneurysms and/or dissection, |
1 |
1 |
Raymond Dalgleish |
00318109 |
Patient III:2 |
PubMed: Salinas-Torres et al., 2020 |
The proband and her half-sister were born with gastroschisis. Both individuals and their shared mother carried the variant. This variant was described in the paper as ENST00000376369.3:c.1612-8C>T.The technique used was whole exome sequencing. |
- |
- |
Mexico |
Mexican |
- |
- |
- |
- |
Gastroschisis |
- |
1 |
1 |
Raymond Dalgleish |
00318110 |
P3 |
PubMed: Rohrbach et al., 2011 |
The c.1471-1G>A variant is predicted to create a cryptic splice site in exon 14 resulting in an out-of-frame deletion of the first 55 bp of exon 14 and a premature stop codon in exon 17. |
- |
- |
Iran |
Iranian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318111 |
- |
PubMed: Sakai et al., 2011 |
The technique used was the custom NGS Gene panel. |
- |
- |
Japan |
Japanese |
- |
- |
- |
- |
? |
Aortic aneurysms and/or dissection, |
1 |
1 |
Raymond Dalgleish |
00318112 |
- |
PubMed: Pousi et al., 2000 |
The maternally inherited exon-14 PTC mutation also results in abnormal splicing with exon 14 being commonly skipped. This results in deletion of 38-amino acid deletion. The mutation on the paternal allele and how it causes low-level expression is still not known. |
- |
- |
United Kingdom (Great Britain) |
British |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318113 |
- |
PubMed: Walker et al., 1999 |
The father's DNA was unavailable for analysis. The mother was 14 years old when the patient was born. Although there is a high likelihood of consanguinity, the father has not been unequivocally identified. The PLOD1 variant is incorrectly described in {PMID10329027:Walker et al., 1999} as 1557C>G. This is due to incorrect use of an alternative PLOD1 mRNA sequnece: GenBank accession no. M98252. This patient is described in {PMID11001813:Yeowell et al., 2000} and also in {PMID10874315:Yeowell et al., 2000} as cell line 1122. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318114 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 variant is incorrectly described as 1557C>G in {PMID10874315:Yeowell et al., 2000}. This is due to incorrect use of an alternative PLOD1 mRNA sequnece: GenBank accession no. M98252. |
- |
- |
United States |
North American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318115 |
- |
- |
- |
- |
- |
- |
white |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Cecilia Giunta |
00318116 |
- |
PubMed: Ha et al., 1994 |
The three-base deletion at positions 1618_1620 and the missense mutation at position 2056 are incorrectly described in {PMID8163671:Ha et al., 1994}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252.The patient is also described in {PMID7646078:Yeowell et al., 1995} and again as cell line 750 in {PMID10874315:Yeowell et al., 2000}. |
- |
- |
Mexico |
Mexican-American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318117 |
- |
PubMed: Spotila et al., 2003 |
A study by {PMID14565595:Spotila et al., 2003} found an association between this SNP in the PLOD1 gene and bone mineral density in the lumbar spine and femoral neck among a population of European descent. The position of the SNP is incorrectly described in the paper as A1832C. This is due to use of an alternative mRNA sequence for the PLOD1 gene: NM_000302.1. |
- |
- |
- |
- |
- |
- |
- |
- |
? |
- |
1 |
1 |
Raymond Dalgleish |
00318118 |
P6 |
PubMed: Rohrbach et al., 2011 |
- |
- |
- |
Netherlands |
Dutch |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318119 |
P7 |
PubMed: Micha et al., 2019 |
The authors state that they a deep intronic variant is expected to have been missed in this patient. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318120 |
- |
PubMed: Pousi et al.,1998 |
The parents of the patient are third-degree cousins but their consanguinity does not contribute to the disease of the patient. The patient has also been previously reported by {PMID429005:Krieg et al.,1979}. Another individual in the same family diagnosed with Ehlers-Danlos Syndrome Type VI is described by {PMID6432919:Ihme et al.,1984}. |
- |
- |
Germany |
German |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
2 |
1 |
Raymond Dalgleish |
00318121 |
- |
PubMed: Yeowell et al., 2000 |
The PLOD1 variant has been incorrectly described as 1702insC in {PMID10874315:Yeowell et al., 2000}. This is due to incorrect use of an alternative PLOD1 mRNA sequence: GenBank accession no. M98252. |
- |
- |
United States |
North American |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318122 |
P7 |
PubMed: Giunta et al., 2005a |
The parents of the patient are first cousins. The patient has also been previously described in {PMID8574422:Hilderink and Brunner, 1995}. |
- |
- |
Netherlands |
Dutch |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318123 |
P2 |
PubMed: Brinckmann et al., 1998 |
P2 (A.K.) is a compound heterozygote patient; the mutated paternal allele is speculated to be a null allele as only cDNA could be analysed. The maternally inherited variant is incorrectly described as c.2036G>C in {PMID9617436:Brinckmann et al., 1998}. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318124 |
- |
PubMed: Tosun et al., 2014 |
The parents were cousins. |
- |
- |
- |
- |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318125 |
Family 122 |
PubMed: Kloss et al., 2017 |
This variant is associated with high myopia, and cosegregated with the phenotype.The technique used was whole exome sequencing. |
- |
- |
Denmark |
Danish |
- |
- |
- |
- |
MYP |
- |
1 |
1 |
Raymond Dalgleish |
00318126 |
P8 |
PubMed: Giunta et al., 2005b |
The patient has consanguineous parents. The PLOD1 variant is incorrectly described as c.1890G>A in {PMID15979919:Giunta et al., 2005b}. The actual variant details has been confirmed with the authors. |
- |
- |
Italy |
Italian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318127 |
Family 2 |
PubMed: Abdalla et al., 2015 |
The parents are first cousins.The premature stop codon in exon 18 does not trigger NMD. |
- |
- |
Egypt |
Egyptian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318128 |
P7 |
PubMed: Rohrbach et al., 2011 |
- |
- |
- |
Somalia |
Somalian |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00318129 |
P9 |
PubMed: Giunta et al., 2005b |
P9 has a female sibling who is more severly affected and the consanguinity of their parents are unknown. The PLOD1 variant is incorrectly described as c.2008A>G in {PMID15979919:Giunta et al., 2005b}. The actual variant details has been confirmed with the authors. |
- |
- |
France |
French |
- |
- |
- |
- |
EDS, EDSKSCL1 |
- |
1 |
1 |
Raymond Dalgleish |
00390029 |
16 |
PubMed: Ruberto 2020 |
- |
? |
- |
Italy |
- |
- |
- |
- |
- |
retinal disease |
Very pale optic disk, chorioretinal atrophy in macular area, highly altered fundus |
1 |
1 |
LOVD |
00413452 |
- |
PubMed: Colman 2021, Journal: Colman 2021 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
EDS |
kyphoscoliotic Ehlers-Danlos syndrome |
2 |
1 |
Johan den Dunnen |
00413453 |
- |
PubMed: Colman 2021, Journal: Colman 2021 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
EDS |
kyphoscoliotic Ehlers-Danlos syndrome |
1 |
1 |
Johan den Dunnen |
00414790 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
EDSKSCL1 |
- |
1 |
1 |
Gemeinschaftspraxis für Humangenetik Dresden |