Global Variome shared LOVD
PNKP (polynucleotide kinase 3'-phosphatase)
LOVD v.3.0 Build 30b [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
Global Variome, with Curator vacancy
View all genes
View PNKP gene homepage
View graphs about the PNKP gene database
Create a new gene entry
View all transcripts
View all transcripts of gene PNKP
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene PNKP
View all variants in gene PNKP
Full data view for gene PNKP
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene PNKP
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene PNKP
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene PNKP
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
All individuals with variants in gene PNKP
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
34 entries on 1 page. Showing entries 1 - 34.
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00132291
FamPatIV2
PubMed: Eisenberger 2018
4-generation family, 8 affected (4F, 4M)
M
no
Germany
white
-
-
-
-
DFNA
see paper; ...
2
8
Hanno Bolz
00206896
20118933_Fam1
PubMed: Shen 2010
5-generation family, 3 affected brothers, unaffected heterozygous carrier parents/relatives
M
yes
Jordan;Palestine
Palestine
-
-
-
-
MCSZ;EIEE10
see paper; ...
1
1
Johan den Dunnen
00206897
20118933_Fam2
PubMed: Shen 2010
4-generation family, affected sister/brother, unaffected heterozygous carrier parents/relatives
F;M
-
Jordan;Palestine
Palestine
-
-
-
-
MCSZ;EIEE10
see paper; ...
1
2
Johan den Dunnen
00206898
20118933_Fam3
PubMed: Shen 2010
6-generation family, 2 affected brothers, unaffected heterozygous carrier parents/relatives
M
yes
United States
Palestine
-
-
-
-
MCSZ;EIEE10
see paper; ...
1
2
Johan den Dunnen
00206899
20118933_Fam4
PubMed: Shen 2010
2-generation family, affectedher/sister brot, unaffected heterozygous carrier parents
F;M
no
Saudi Arabia
-
-
-
-
-
MCSZ;EIEE10
see paper
1
2
Johan den Dunnen
00206900
20118933_Fam5
PubMed: Shen 2010
2-generation family, 1 affected, unaffected heterozygous carrier parents
F
no
Turkey
-
-
-
-
-
MCSZ;EIEE10
see paper; ...
1
1
Johan den Dunnen
00206901
20118933_Fam6
PubMed: Shen 2010
2-generation family, affected brother/sister, unaffected heterozygous carrier parents
F;M
-
Germany;Ireland
-
-
-
-
-
MCSZ;EIEE10
see paper; ...
2
2
Johan den Dunnen
00206902
20118933-Fam7
PubMed: Shen 2010
2-generation family, affected sister/brother, unaffected heterozygous carrier parents
F;M
-
United States
Sweden;Italy;Ireland;England
-
-
-
-
MCSZ;EIEE10
see paper; ...
2
2
Johan den Dunnen
00206903
23224214-Fam
PubMed: Poulton 2013
8-generation family, 3 affected (3M), unaffected heterozygous carrier parents/relatives
M
yes
Netherlands
-
-
-
-
-
atrophy, cerebellar
see paper; ...
1
3
Johan den Dunnen
00206904
25728773-Fam1Pat1
PubMed: Bras 2015
2-generation family, affected brother/sister, unaffected heterozygous carrier parents
M
-
Portugal
-
-
-
-
-
AOA
see paper; …
2
2
Johan den Dunnen
00206905
25728773-Fam1Pat2
PubMed: Bras 2015
sister
F
-
Portugal
-
-
-
-
-
AOA
see paper; …
2
1
Johan den Dunnen
00206906
25728773-Fam2Pat3
PubMed: Bras 2015
3-generation family, 1 affected, unaffected heterozygous carrier parents
F
yes
Portugal
-
-
-
-
-
AOA
see paper; …
1
1
Johan den Dunnen
00206907
25728773-Fam3Pat4
PubMed: Bras 2015
2-generation family, 1 affected, unaffected heterozygous carrier parents
F
-
Portugal
-
-
-
-
-
AOA
see paper; …
2
1
Johan den Dunnen
00206908
25728773-Fam4Pat5
PubMed: Bras 2015
2-generation family, 1 affected, unaffected heterozygous carrier parents
M
-
Portugal
-
-
-
-
-
AOA
see paper; …
2
1
Johan den Dunnen
00206909
25728773-Fam5Pat6
PubMed: Bras 2015
3-generation family, 1 affected, unaffected heterozygous carrier parents
F
yes
Portugal
-
-
-
-
-
AOA
see paper; …
1
1
Johan den Dunnen
00206910
25728773-Fam6Pat7
PubMed: Bras 2015
4-generation family, 1 affected, unaffected heterozygous carrier parents
F
yes
Portugal
-
-
-
-
-
AOA
see paper; …
2
1
Johan den Dunnen
00206911
25728773-Fam7Pat8
PubMed: Bras 2015
2-generation family, affected brother/sister, unaffected heterozygous carrier parents
F
yes
Portugal
-
-
-
-
-
AOA
see paper; …
1
2
Johan den Dunnen
00206912
25728773-Fam7Pat9
PubMed: Bras 2015
brother
M
yes
Portugal
-
-
-
-
-
AOA
see paper; …
1
1
Johan den Dunnen
00206913
25728773-Fam8Pat10
PubMed: Bras 2015
3-generation family, affected sister/brother, unaffected heterozygous carrier parents
F
-
Portugal
-
-
-
-
-
AOA
see paper; …
1
2
Johan den Dunnen
00206914
25728773-Fam8Pat11
PubMed: Bras 2015
brother
M
-
Portugal
-
-
-
-
-
AOA
see paper; …
1
1
Johan den Dunnen
00225668
25558065-Fam11DG1510
PubMed: Alazami 2015
,
Journal: Alazami 2015
-
-
yes
Saudi Arabia
-
-
-
-
-
?
see paper; …, primary microcephaly, global developmental delay, no seizures
1
1
Johan den Dunnen
00269530
-
PubMed: Minardi 2020
-
F
-
Italy
-
-
-
-
-
EE
Epileptic Encephalopathy (HP:0200134)
2
1
Francesca Bisulli
00269879
-
-
-
F
-
-
-
-
-
-
-
?
Microcephaly (HP:0000252); Spasticity (HP:0001257); Global developmental delay (HP:0001263); Limb joint contracture (HP:0003121); Muscular hypotonia of the trunk (HP:0008936)
2
1
IMGAG
00275659
FamMR121Pat1
PubMed: Santos-Cortez 2018
4-generation family, 3 affected (2F, M), unaffected heterozygous carrier parents/relatives
F
yes
Pakistan
-
-
-
-
-
ID
OFC 41cm; IQ 25, severe intellectual disability (HP:0010864); microcephaly
1
3
Johan den Dunnen
00275660
FamMR121Pat2
PubMed: Santos-Cortez 2018
-
M
yes
Pakistan
-
-
-
-
-
ID
OFC 40cm; IQ 25, severe intellectual disability (HP:0010864)
1
1
Johan den Dunnen
00275661
FamMR121Pat3
PubMed: Santos-Cortez 2018
-
F
yes
Pakistan
-
-
-
-
-
ID
OFC 40cm; IQ 25, severe intellectual disability (HP:0010864)
1
1
Johan den Dunnen
00292181
-
PubMed: Narang 2020
,
Journal: Narang 2020
analysis 2794 individuals (India)
-
-
India
-
-
-
-
-
?
-
1
19
Mohammed Faruq
00292182
-
PubMed: Narang 2020
,
Journal: Narang 2020
analysis 2794 individuals (India)
-
-
India
-
-
-
-
-
?
-
1
1
Mohammed Faruq
00303146
T23141
PubMed: Carvill 2013
-
M
-
-
-
-
-
-
-
EE
epileptic encephalopathy
1
1
Johan den Dunnen
00320161
-
-
-
F
-
-
-
-
-
-
-
?
Microcephaly (HP:0000252); 4-layered lissencephaly (HP:0006818); Short stature (HP:0004322); Seizure (HP:0001250); Cleft palate (HP:0000175); Mongolian blue spot (HP:0011369)
1
1
IMGAG
00361544
11DG1510
PubMed: Anazi 2017
familial
M
yes
Saudi Arabia
-
-
-
-
-
ID
not syndromic; global developmental delay, progressive microcephaly, seizures
1
1
Johan den Dunnen
00374445
S-2562
PubMed: Ganapathy 2019
-
-
-
India
-
-
-
-
-
?
Microcephaly, global developmental delay, seizures and dysmorphism
2
1
Johan den Dunnen
00403855
TF015
PubMed: Froukh 2020
analysis 103 families with neurodevelopmental disorders
-
-
Jordan
-
-
-
-
-
NDD
-
2
1
Johan den Dunnen
00433357
Pat26
PubMed: Duerinckx 2021
patient
F
yes
Turkey
-
-
-
-
-
microcephaly
primary microcephaly; birth OFC median; OFC (SD-7.5); 3m-developmental and epileptic encephalopathy, refractory, treatment LEV and VPA; birth OFC median; OFC (SD-7.5); 3m-developmental and epileptic encephalopathy, refractory, treatment LEV and VPA
1
1
Johan den Dunnen
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our
APIs
to retrieve data.
Powered by
LOVD v.3.0
Build 30b
LOVD software ©2004-2024
Leiden University Medical Center
Database contents © by their respective submitters and curators