Global Variome shared LOVD
SOX6 (SRY (sex determining region Y)-box 6)
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All individuals with variants in gene SOX6
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
21 entries on 1 page. Showing entries 1 - 21.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00302537
father
PubMed: Tolchin 2020
2-generation family, 4 affected, father and 3 sibs
M
-
United States
-
-
-
-
-
NDD
mild intellectual disability, no further clinical evaluation available
1
4
Johan den Dunnen
00302538
PIT-1; 406933
PubMed: Tolchin 2020
sib
M
-
United States
-
-
-
-
-
NDD
weight +1 SD, height +1 SD, OFC 0 SD; mild intellectual disability; large ears, large nose; multiple osteochondromas; ADHD, autism, aggressive, emotional lability, tantrums, staring spells; submucous cleft palate
1
1
Johan den Dunnen
00302539
PIT-2
PubMed: Tolchin 2020
sib
M
-
United States
-
-
-
-
-
NDD
weight −0.5 SD, height −0.5 SD, OFC −0.5 SD; mild intellectual disability; no facial dysmorphism; multiple osteochondromas; ADHD, autism, sleep disruption, staring spells, and left-sided weakness; bilateral nasolacrimal duct obstructions, food allergies
1
1
Johan den Dunnen
00302540
PIT-3
PubMed: Tolchin 2020
sib
F
-
United States
-
-
-
-
-
NDD
weight +0.5 SD, height −2.5 SD, OFC +0.5 SD; normal intellectual disability; no facial dysmorphism; no osteochondromas; normal behaviour; diastasis recti, umbilical hernia, cardiac rhabdomyoma
1
1
Johan den Dunnen
00302541
CHUN-1; 406934
PubMed: Tolchin 2020
-
M
-
France
-
-
-
-
-
NDD
weight +2 SD, height +0.5 SD, OFC +1 SD; mild intellectual disability; no facial dysmorphism; no osteochondromas; ADHD, anxiety
1
1
Johan den Dunnen
00302542
CHLM-1; 406929
PubMed: Tolchin 2020
-
F
-
France
-
-
-
-
-
NDD
weight +3.5 SD, height +4.5 SD, OFC +1 SD; mild intellectual disability; no facial dysmorphism; no osteochondromas; normal behaviour; arachnodactyly, precocious puberty
1
1
Johan den Dunnen
00302543
LJU-1; 406932
PubMed: Tolchin 2020
-
M
-
Slovenia
-
-
-
-
-
NDD
weight 0 SD, height 0 SD, OFC −0.5 SD; mild to moderate intellectual disability; no facial dysmorphism; no osteochondromas; normal behaviour; hypermetropia
1
1
Johan den Dunnen
00302544
IHG-1; 406930
PubMed: Tolchin 2020
-
M
-
Germany
-
-
-
-
-
NDD
weight +4 SD, height +0.5 SD, OFC +2 SD; mild intellectual disability; no facial dysmorphism; no osteochondromas; restlessness, short attention span, quick changes of mood, aggressive
1
1
Johan den Dunnen
00302545
CHUP-1; 406931
PubMed: Tolchin 2020
-
F
-
France
-
-
-
-
-
NDD
weight −1 SD, height −1 SD, OFC −1 SD; moderate intellectual disability; oxycephaly (sagittal, metopic, and coronal craniosynostosis), micrognathia; no osteochondromas; attention deficit, anxiety
1
1
Johan den Dunnen
00302546
UK-1; 412103
PubMed: Tolchin 2020
-
M
-
United Kingdom (Great Britain)
-
-
-
-
-
NDD
weight −1 SD, height 0 SD, OFC −2 SD; moderate intellectual disability; scaphocephaly (sagittal craniosynostosis), prominent occiput, hypertelorism; no osteochondromas; ADHD, lack of sense of danger, destructive, easily upset; short fifth fingers with clinodactyly, flat feet with valgus heels
1
1
Johan den Dunnen
00302547
UK-2; 412119
PubMed: Tolchin 2020
-
F
-
United Kingdom (Great Britain)
-
-
-
-
-
NDD
weight −0.8 SD, height +1 SD, OFC −1 SD; mild intellectual disability; scaphocephaly (sagittal and left coronal craniosynostosis); no osteochondromas; attention deficit, sleep disturbance, aggressive episodes
1
1
Johan den Dunnen
00302548
CHUN-2; 412120
PubMed: Tolchin 2020
-
M
-
France
-
-
-
-
-
NDD
weight −1 SD, height −1 SD, OFC −1 SD; mild to moderate intellectual disability; high forehead; no osteochondromas; ADHD; ogival palate
1
1
Johan den Dunnen
00302549
GDX-3;a 412130
PubMed: Tolchin 2020
-
M
-
Canada
-
-
-
-
-
NDD
weight +1 SD, height +1.5 SD, OFC +1 SD; severe intellectual disability; no facial dysmorphism; no osteochondromas; ADHD; obesity
1
1
Johan den Dunnen
00302550
GDX-1; 412121
PubMed: Tolchin 2020
-
F
-
United States
-
-
-
-
-
NDD
weight +2 SD, height +1 SD, OFC 0 SD; mild intellectual disability; bitemporal narrowing, small mouth; no osteochondromas; ADHD, anxiety; bilateral inverted nipples, sensorineural hearing loss, vestibular dysfunction
1
1
Johan den Dunnen
00302551
GDX-2; 412122
PubMed: Tolchin 2020
-
F
-
United States
-
-
-
-
-
NDD
weight +1.5 SD, height −1 SD, OFC 0 SD; mild intellectual disability; short palpebral fissures, hooded eyelids, hypertelorism, wide nasal bridge, low-set ears; no osteochondromas; ADHD; high arched palate; long, tapering fingers; hypotonia
1
1
Johan den Dunnen
00302552
PS-1; 412123
PubMed: Tolchin 2020
-
F
-
France
-
-
-
-
-
NDD
weight +4 SD, height −1.5 SD, OFC 0 SD; moderate intellectual disability; synophrys; no osteochondromas; normal behaviour; short extremities, hirsutism, dental abnormalities, Hashimoto’s thyroiditis
1
1
Johan den Dunnen
00302553
CHOP-1; 412124
PubMed: Tolchin 2020
-
F
-
United States
-
-
-
-
-
NDD
weight +1 SD, height +2 SD, OFC 0 SD; mild intellectual disability; no facial dysmorphism; multiple osteochondromas; ADHD; dysgraphia, developmental delay
1
1
Johan den Dunnen
00302554
LEUV-1; 412126
PubMed: Tolchin 2020
-
F
-
Belgium
-
-
-
-
-
NDD
weight +0.1 SD, height +1.2 SD, OFC −0.9 SD; mild to moderate intellectual disability; no facial dysmorphism; no osteochondromas; ADHD, autism; tremor hands
1
1
Johan den Dunnen
00302555
LEID-1;b 412127
PubMed: Tolchin 2020
-
M
-
Netherlands
-
-
-
-
-
NDD
weight 0 SD, height −0.5 SD, OFC −0.2 SD; severe intellectual disability; long face, triangular; full eyebrows; no osteochondromas; autism, abnormal movements, automutilation, hyperventilation
1
1
Johan den Dunnen
00302556
CHUG-1
PubMed: Tolchin 2020
-
M
-
France
-
-
-
-
-
NDD
weight +0.6 SD, height +0.8 SD, OFC +0.7 SD; mild to moderate intellectual disability; no facial dysmorphism; no osteochondromas; ADHD, oppositional disorder, self-endangerment, sleep disorders; gestural dyspraxia, graphomotor difficulties, troubles in neurosensory integration
2
1
Johan den Dunnen
00467473
348301
-
-
M
no
Germany
-
-
-
-
-
MR;ID
Neurodevelopmental delay, Delayed speech and language development, Abnormality of mental function, Reduced attention regulation, Pectus carinatum
1
1
Andreas Laner
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