Global Variome shared LOVD
SPOP (speckle-type POZ protein)
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View all individuals with variants in gene SPOP
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View all diseases associated with gene SPOP
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View all screenings for gene SPOP
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All individuals with variants in gene SPOP
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
8 entries on 1 page. Showing entries 1 - 8.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00289405
Pat1
PubMed: Nabais 2020
-
F
-
-
-
-
-
-
-
NDD
birth 40w3d, length 47cm (10th-25th), weight 3.033kg (10th-25th), head 32cm (-3SD) at 16d NA (microcephaly); height 104.5cm (~50th), weight 15.3kg (10th-25th), head 44cm (-4SD); prenatal long bones (<-3 SD); congenital microcephaly; jaundice requiring phototherapy; motor delay; walk-19m; speech delay; 2y10m-60 words; no epilepsy; hypertonia; MRI brain 5y-simplified gyri; decreased stranger anxiety; brachycephaly, prominent glabella; dysplastic simple ears with thickened helix; highly arched eyebrows, underdeveloped supraorbital ridges, downslanted narrow palpebral fissures, deeply set eyes; prominent nasal bridge,; flat philtrum; pointed chin; clinodactyly 5th digits bilaterally; normal feet; sensorineural hearing loss; no ophthalmologic abnormality; no cardiovascular abnormality; no respiratory abnormality; no gastrointestinal abnormality; no urogenital abnormality; no skin abnormality; no endocrine abnormality; no sleep disturbance; sacral dimple
1
1
Johan den Dunnen
00289406
Pat2
PubMed: Nabais 2020
-
M
-
-
-
-
-
-
-
NDD
birth 39w, weight 2.409kg (3rd), head 33.5cm (10th-25th); height 77cm (10th-25th), weight 8.8kg (-2.3SD), head 40.5cm (-5SD); no prenatal anomalies; congenital microcephaly; jaundice that selfresolved, respiratory difficulties requiring tracheostomy; motor delay; walk-~36m; speech delay; 6y-vocalising; severe intellectual disability; autoagression; narrow forehead, low anterior hairline; normal ears; highly arched eyebrows, synophrys, long eyelashes, epicanthus, telecanthus, narrow palpebral fissures; wide and bulbous nasal tip, underdeveloped nasal alae; flat philtrum; pointed chin; normal hands; normal feet; bilateral hearing loss; bilateral optic nerve hypoplasia; no cardiovascular abnormality; 3m-tracheostomy; 3m-gastrostomy; bilateral vesicoureteric reflux; no skin abnormality; no endocrine abnormality
1
1
Johan den Dunnen
00289407
Pat3
PubMed: Nabais 2020
-
F
-
-
-
-
-
-
-
NDD
birth 33w5d, length 46.4cm (3rd-10th), weight 2.575kg (3rd-10th), head 35cm (25th-50th); height 65.1cm (-2.5SD), weight 5.6kg (-4SD), head 49cm (+3.5SD); prenatal polyhydramnios, breech presentation; congenital heart disease; hypotonia, swallowing dysfunction, feeding difficulties; motor delay; speech delay; no epilepsy; central hypotonia; MRI brain 4m-enlargement all ventricles, prominent subarachnoid spaces, bifrontal extra-axial fluid spaces, 17m-mildly increased ventriculomegaly, symmetrically dysmorphic hippocampi; frontal bossing, triangular face; low-set small ears; hypertelorism, deep set eyes; low and wide nasal bridge, wide and bulbous nasal tip, short nose; wide gums; micrognathia; normal hands; normal feet; no hearing impairment; small optic discs; small ventricular septal defect;, pulmonary stenosis and supravalvular pulmonary stenosis, mild right ventricular outflow obstruction; no respiratory abnormality; choking episodes, gastroesophageal reflux disease, Sandifer syndrome, 6m-gastrostomy; no urogenital abnormality; no skin abnormality; no endocrine abnormality; no sleep disturbance; failure to thrive
1
1
Johan den Dunnen
00289408
Pat4
PubMed: Nabais 2020
-
M
-
-
-
-
-
-
-
NDD
birth 39w, length 47cm (10th-25th), weight 2.700kg (3rd-10th); height 151.8cm (-3.1SD), weight 49.7kg (3rd), head (25th); prenatal hypoplastic left heart; congenital heart disease; bradycardia, dysrhytmia, thrombocytopenia; motor delay; walk-36m; speech delay; first words 4y; intellectual disability (IQ46); epilepsy; left hemiparesis, intractable migraines, dystonia, chorea; MRI brain 16y-borderline enlarged ventricles, slightly small corpus callosum splenium; overfriendliness, attention deficit hyperactivity disorder, agitation; normal cranium/normal forehead; low-set small ears; hypertelorism; short, low nasal bridge, upturned nares; high-arched palate; pointed chin; normal hands; normal feet; no hearing impairment; abnormality refraction; variant of hypoplastic left heart syndrome (atrial septal defect, small left ventricule, mitral valve and aorta) with left ventricular outflow tract obstruction (subaortic membrane, bicuspid aortic valve, coartation descending aorta); episode of hemoptysis; no astrointestinal abnormality; (hypogonadism; no skin abnormality; testosterone treatment; sleep apnea; failure to thrive in infancy, bleeding disorder with platelet dysfunction, chronic jaundice, mild scoliosis, osteoporosis, vitamin D deficiency
1
1
Johan den Dunnen
00289409
Pat5
PubMed: Nabais 2020
-
M
-
Netherlands
-
-
-
-
-
NDD
birth 38w, weight 3.070kg (10th-25th); height 178.5cm (50th-75th), weight 73kg (50th-75th), head 56.4cm (75th-90th); no prenatal anomalies; motor delay; walk-17m; speech delay; intellectual disability (IQ45); epilepsy; MRI brain 5y normal; autism; large forehead; protruding ears; hypertelorism, long palpebral fissures, sparse and thin eyebrows; normal nose; normal mouth; pointed chin; no hearing impairment; no ophthalmologic abnormality; urogenital abnormality; hypothyroidism; sleep disturbance;
1
1
Johan den Dunnen
00289410
Pat6
PubMed: Nabais 2020
-
F
-
Netherlands
-
-
-
-
-
NDD
birth 37w, length 47cm (10th-25th), weight 3.000kg (10th-25th); height 172cm (90th-97th), weight 89kg (97th), head 57cm (+2.5SD); no prenatal anomalies; congenital heart disease, bilateral cleft lip/palate; motor delay; walk-24m; speech delay; first words~5y; intellectual disability (IQ53); severe temper tantrums; large forehead; low-set posteriorly rotated ears; hypertelorism, sparse and thin eyebrows; prominent nasal bridge, bulbous nasal tip; bilateral cleft lip/palate; normal chin; distally tapered, long fingers; clinodactyly 5th fingers; short wide feet, pes cavus, short broad halluces; no hearing impairment; strabismus; atrial septal defect; no respiratory abnormality; no astrointestinal abnormality; no skin abnormality; sleep apnea;
1
1
Johan den Dunnen
00289411
Pat7
PubMed: Nabais 2020
-
F
-
-
-
-
-
-
-
NDD
birth 40w, length 54.6cm (97th), weight 3.800 kg (75th-90th), (macrocephalic); height 158.8cm (25th-50th), weight 90.7kg (+2.5SD), head 5y-56cm (+4SD); multicystic kidney dysplasia; hypotonia, respiratory and feeding difficulties; motor delay; walk-24m; speech delay; mild intellectual disability; no epilepsy; MRI brain normal; anxiety; large forehead; normal ears; asymmetric palpebral fissures; prominent and wide nasal bridge, wide and bulbous nasal tip; thin lips; norma chin; normal hands; normal feet; no hearing impairment; abnormality refraction; patent ductus arteriosus, small ventricular septal defect; no respiratory abnormality; chronic constipation, gastroesophageal reflux disease; left multicystic kidney; eczema; hypothyroidism; sleep apnea; unusual fat distribution
1
1
Johan den Dunnen
00334710
-
PubMed: Maranhao 2015
analysis 25 Pedigrees
-
-
Pakistan
-
-
-
-
-
retinal disease
-
1
6
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