Global Variome shared LOVD
STAG2 (stromal antigen 2)
LOVD v.3.0 Build 30b [
Current LOVD status
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All individuals with variants in gene STAG2
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
14 entries on 1 page. Showing entries 1 - 14.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00000208
-
PubMed: Sun 2011
,
Journal: Sun 2011
-
M
no
Netherlands
-
-
-
-
-
CHTE
central hypothyroidism (FT4 0.50-0.99of lower limit normal), no prolactin deficiency, age sonographic determination testicular volume 17.64y, testicular volume right/left 21/20 (7.3–16ml)
4
1
Yu Sun
00000209
-
PubMed: Sun 2011
,
Journal: Sun 2011
-
M
no
Netherlands
-
-
-
-
-
CHTE
central hypothyroidism (FT4 0.50-0.99of lower limit normal), prolactin deficiency, age sonographic determination testicular volume 21.36y, testicular volume right/left 30/26 (8.5–18.3ml)
4
1
Yu Sun
00374123
-
PubMed: Lefebvre 2021
fetus
F
-
France
-
-
-
-
-
?
32w-fetus, ultrasound Cerebral asymmetry, corpus callosum hypoplasia, aortic coarctation, vertebral segmentation defect, common mesentery, cleft palate; autopsy intrauterine growth retardation, microcephaly, corpus callosum hypoplasia, optic nerve coloboma, haemivertebrae
1
1
Johan den Dunnen
00436291
Pat12
PubMed: Yuan 2019
-
F
-
-
-
-
-
-
-
?
dysmorphic features, microcephaly, seizures
1
1
Johan den Dunnen
00436296
Pat7
PubMed: Yuan 2019
2-generation family, 1 affected, unaffected; non-carrier parents
F
-
-
-
-
-
-
-
?
no synophrys; thin upper lip; developmental delay; scoliosis; seizures?; diaphragmatic hernia,congenital heart disease, gastroesophageal reflux; weight 26th, length 34th, OFC 47th; no microcephaly; motor delay; speech delay; seizures, myoclonic movements; no brachycephaly; no ptosis; no hypertelorism; no depressed/broad nasal bridge; no bulbous nasal tip; dysmorphic ears; no high arched palate; thin upper lip; no cleft lip/palate; hypoplastic nails; no congenital heart defect, hypoplastic left heart, ventricular septal defect, coactation aorta; congenital diaphragmatic hernia; gastroesophageal reflux, Nissen and G-tube; no structural anomalies renal tract; scoliosis; rib fusion, T4-5, T10-11, bilateral; vertebral anomalies, vertebral clefts; no micromelia; no phocomelia; no brachydactyly; no single transverse palmar crease; no 2-3 toe syndactyly; ECG moderate hypoplasia transverse arch, moderate coarctation aorta, ventricular septal defect, moderate left pulmonary artery hypoplasia
1
1
Johan den Dunnen
00436297
Pat8
PubMed: Yuan 2019
2-generation family, 1 affected, unaffected; non-carrier parents
F
-
-
-
-
-
-
-
?
no synophrys; long eyelashes,long philtrum, absent teeth(late erupting), thin upper lip, micrognathia; developmental delay, intellectual disability; compulsive, anxiety; 5th finger clinodactyly, abnormal palmar crease,2-3 syndactyly; hirsutism, cutis marmorata, hearing loss; gastroesophageal reflux; failure to thrive; weight <2nd, length <2nd, OFC <2nd; short stature; microcephaly; motor delay; speech delay; behavioral problems; hypotonia; brachycephaly; long curly eyelashes; no ptosis; no hypertelorism; no depressed/broad nasal bridge; microtia (right); dysmorphic ears; long/smooth philtrum; no high arched palate; thin upper lip; no cleft lip/palate; late-erupting teeth; micrognathia; no short neck; hirsutism; low, posterior hairline; cutis marmorata; strabismus; conductive hearing loss; low-pitched, growling cry in infancy; small nipples; gastroesophageal reflux; no micromelia; no phocomelia; fifth finger clinodactyly; single transverse palmar crease; 2-3 toe syndactyly
1
1
Johan den Dunnen
00436298
Pat9
PubMed: Yuan 2019
2-generation family, 1 affected, unaffected; non-carrier parents
F
-
-
-
-
-
-
-
?
no synophrys; long curly eyelashes, anteverted nares, high palate, downturned mouth,widely spaced teeth etc.; developmental delay, intellectual disability; major eye malformation, small niples; diaphragmatic hernia, gastroesophageal reflux; failure to thrive; weight 6th, length <2nd, OFC <2nd; short stature; microcephaly; motor delay; speech delay; hypotonia; long curly eyelashes; no ptosis; hypertelorism; anteverted nares; depressed/broad nasal bridge; bulbous nasal tip; no low-set ears; no microtia; dysmorphic ears; long/smooth philtrum; thin upper lip; downturned mouth; widely spaced teeth; micrognathia; short neck; no congenital heart defect; congenital diaphragmatic hernia (right); pulmonary hypoplasia (right); gastroesophageal reflux; vertebral anomalies, vertebral clefts
1
1
Johan den Dunnen
00436299
Pat10
PubMed: Yuan 2019
2-generation family, 1 affected, unaffected; non-carrier parents
F
-
-
-
-
-
-
-
?
no synophrys; depressed broad nasal bridge,anteverted nares, micrognathia,high arched palate, absent teeth; developmental delay, intellectual disability; scoliosis; major eye malformation, seizures; no failure to thrive; weight 3rd, length 3rd, OFC 5-10th; short stature; microcephaly; motor delay; speech delay; no autism spectrum disorder; behavioral problems , irritability; izures, right sided with secondary generalization; no hypertonia; hypotonia; no brachycephaly; no long curly eyelashes; no ptosis; no hypertelorism; anteverted nares; depressed/broad nasal bridge; bulbous nasal tip; low-set ears; no microtia; dysmorphic ears; no long/smooth philtrum; narrow high arched palate; no thin upper lip; no downturned mouth, small mouth; no cleft lip/palate; late-erupting teeth, single central incisor; micrognathia; no short neck; hypoplastic nails, with pits; no hirsutism; ?; no myopia; no hearing loss; no congenital heart defect, no murmur; no congenital diaphragmatic hernia; no pulmonary hypoplasia; no recurrent infections; no small nipples, but accessory nipple left side; no gastroesophageal reflux; 10m-normal renal ultrasound; scoliosis, dextroscoliosis; rib fusion; vertebral anomalies; no limited elbow extension; no radioulnar abnormalities; no micromelia; no phocomelia; no brachydactyly; no fifth finger clinodactyly; no single transverse palmar crease; no 2-3 toe syndactyly; MRI brain callosal agenesis, colpocephaly of lateral ventricle atrium and occipital horns, no migrational anomaly, no infarct or extra-axial collection
1
1
Johan den Dunnen
00436300
Pat11
PubMed: Yuan 2019
2-generation family, 1 affected, unaffected; non-carrier parents
M
-
-
-
-
-
-
-
?
no synophrys; depressed broad nasal bridge,thin lips; developmental delay, intellectual disability; scoliosis; gastro-intestinal malformation, cleft palate, renal malformation; failure to thrive; weight 3rd, length <3rd, OFC 10-25th; short stature; no microcephaly; motor delay; speech delay; no behavioral problems; no seizures; no hypertonia; hypotonia; no long curly eyelashes; no ptosis; hypertelorism; no anteverted nares; depressed/broad nasal bridge; bulbous nasal tip; low-set ears; microtia; dysmorphic ears; no long/smooth philtrum; thin upper lip; no downturned mouth; cleft lip/palate; no widely spaced teeth; no late-erupting teeth; no micrognathia; no hypoplastic nails; no hirsutism; no cutis marmorata; no myopia; no strabismus; no hearing loss; minimal patent foramen ovale, resolved itself; no pulmonary hypoplasia; no recurrent infections; no gastroesophageal reflux; no hypoplastic male genitalia; no cryptorchidism; single kidney; scoliosis; no rib fusion; no vertebral anomalies; no micromelia; no phocomelia; no 2-3 toe syndactyly; MRI brain ectopic posterior pituitary, short pituitary stalk; 11 ribs, scoliosis; ECG minimal patent foramen ovale, resolved itself. Echocardiogram normal at follow up visit.
1
1
Johan den Dunnen
00436302
Pat1
PubMed: Mullegama 2017
2-generation family, 1 affected, unaffected; non-carrier parents
F
-
United States
-
-
-
-
-
?
see paper; ..., weight 29th, length 8th, OFC 5th; short stature; microcephaly; developmental delay; speech delay; no autism spectrum disorder; behavioral problems; micrognathia, ear abnormalities, wide-set eyes, beaked or prominent nose, arched eyebrows, or low-set ears, cleft/arched palate; low, anterior hairline; hearing loss; congenital heart defect; fifth finger clinodactyly; 2-3 toe syndactyly; MRI brain dysgenesis splenium corpus callosum; ECG apical and muscular ventricular septal defect
1
1
Johan den Dunnen
00436303
Pat2
PubMed: Mullegama 2017
-
F
-
-
-
-
-
-
-
?
see paper; ..., abnormality nervous system (HP:0000707), abnormality ear (HP:0000598), abnormality head or neck (HP:0000152), abnormal growth (HP:0001507), abnormality limbs (HP:0040064), abnormality skeletal system (HP:0000924)
1
1
Johan den Dunnen
00436304
Pat3
PubMed: Mullegama 2017
-
-
-
-
-
-
-
-
-
?
see paper; ..., abnormality nervous system (HP:0000707), abnormality ear (HP:0000598), abnormality head or neck (HP:0000152), abnormality abdomen (HP:0001438), abnormality respiratory system (HP:0002086)
1
1
Johan den Dunnen
00459538
patient;PatA
Corona-Rivera et al. (not paper listed),
PubMed: Chmielewska 2024
2-generation family, 1 affected, mosaicism in mother
F
-
Mexico
Europe
-
-
-
-
NDD
see paper; ..., height <1st percentile, severe microcephaly; small forehead, prominent sagittal suture; increased tone in all extremities ; semilobar holoprosencephaly and microcephaly, small 3rd ventricle, formed but thin splenium of corpus callosum, partial thalamic fusion, complete basal ganglia fusion, dorsal interhemispheric fissural cyst; hypoplastic left heart syndrome; normal skin
1
1
Johan den Dunnen
00465874
334050
-
prenatal Dx
F
no
? (unknown)
-
-
-
-
-
HPE13
Abnormality of prenatal development or birth, Spina bifida, Abnormal heart morphology, Abnormal fetal cardiovascular morphology, Single ventricle
1
1
Andreas Laner
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How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
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