Global Variome shared LOVD
TEAD1 (TEA domain family member 1 (SV40 transcript...))
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Global Variome, with Curator vacancy
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All individuals with variants in gene TEAD1
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
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all entries beginning with 'p.(Arg'
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="p.0"
all entries exactly matching 'p.0'
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combination
Text
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Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
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Date
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<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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11 entries on 1 page. Showing entries 1 - 11.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00000209
-
PubMed: Sun 2011
,
Journal: Sun 2011
-
M
no
Netherlands
-
-
-
-
-
CHTE
central hypothyroidism (FT4 0.50-0.99of lower limit normal), prolactin deficiency, age sonographic determination testicular volume 21.36y, testicular volume right/left 30/26 (8.5–18.3ml)
1
1
Yu Sun
00372391
Fam2
PubMed: Schrauwen 2015
2-generation family, 1 affected, unaffected heterozygous carrier parents
-
-
-
-
-
-
-
-
?
see paper; ..., normal corpus callosum, retinal lacunae, 3.5m-infantile seizures; cerebellar cyst, periventricular heterotopias
1
1
Johan den Dunnen
00372393
family
PubMed: Fossdale 2004
81 patients from 10 related families
F;M
-
Iceland
-
-
-
-
-
SCRA
see paper; ..., symmetrical lesions radiating from the optic disc involving retina and choroid
1
81
Johan den Dunnen
00376317
-
PubMed: Avela 2019
present in unaffected mother
-
-
Finland
Finnish
-
-
-
-
retinal disease
-
1
1
LOVD
00391363
19
{PMID:Méjécase 2020:3278337
-
?
-
United Arab Emirates
-
-
-
-
-
retinal disease
-
1
1
LOVD
00408444
31
PubMed: Avela 2019
-
?
-
Finland
-
-
-
-
-
retinal disease
-
1
1
LOVD
00417484
?
PubMed: Jonasson 2007
-
F
-
-
Icelandic
82y
-
-
-
SCRA
congenital anterior polar cataracts and Sveinsson chorioretinal atrophy from childhood lost central vision in both eyes within 1 year because of the extension of Sveinsson chorioretinal atrophy into the macula; intravenous fluorescein angiography: the most severely affected areas apparently lacked retinal pigment epithelium (RPE) and a choroidal vasculature, in less severely affected areas, the RPE and choriocapillaris absent but some choroidal blood vessels still present; at some sites in the transitional zone between affected and apparently healthy tissue, some fluorescein leakage apparent from the margins of a still-functioning choriocapillaris; retinal blood vessels unaffected. Eyes enucleated within 4 hours of death at the age of 82 years, right eye fixed in formalin for light microscopy; light microscopy: the macroscopic changes reflected atrophy of the sensory retina and choroid and a loss of RPE; none of the examined retinal tissue had a multilayered ganglion cell layer; macular region and fovea could not be identified, abnormalities most conspicuous in the areas of total RPE atrophy and somewhat less marked in the zones between the atrophic and normal sensory retina; at the margin of some affected areas, only RPE and the photoreceptor outer segment junctions affected; portions of the posterior retina extremely well preserved, in sharp contrast to the degenerated sensory retina; at the margin between apparently normal and atrophic retina, a portion of the retina contained small eosinophilic globular material apparently derived from photoreceptors, adjacent to a multilayered RPE that seemed to contain multinucleated cells and may reflect a tangential section through the retina; severely degenerated sensory retina rested on a thin Bruch’s membrane that devoid of a normally attached RPE; in the more severely affected areas, the sensory retina, RPE, and choriocapillaris absent, exposing an extremely thin atrophic choroid with very few melanocytes and a naked sclera; Bruch’s membrane in the vicinity of theic nerve head: several focal thickenings and excrescences; discrete atrophic areas of the posterior sensory retina characterized by degenerate retinal cells adherent to the underlying choroid, in contrast to normal eyes, in which the sensory retina is separated from the RPE by a potential space that typically becomes accentuated because of the artifactual separation of these structures in eyes studied after death; the peripheral sensory retina not adherent to the attenuated RPE. Histopathologic observations: some transitions between affected and unaffected areas, both the RPE and the outer segments of the photoreceptors ended abruptly, but the nuclei of the photoreceptors retained a normal appearance slightly further into the more severely affected area; other areas in the posterior pole affected similarly, except that the RPE immediately terminated, whereas the outer segments of the photoreceptors persisted further toward the peripheral retina; advanced changes included a disappearance of the RPE, photoreceptors, and choriocapillaris, and when Bruch’s membrane could be identified, it thin and the adjacent choriocapillaris atrophic; most advanced areas: all layers between the bipolar neurons and the sclera absent; peripheral retina contained areas without photoreceptors, underlying individual cells of the RPE sparse and attenuated, much thinner than normal but still formed a continuous layer beneath the photoreceptors in the peripheral retina; optic nerve: normal in cross sections, diameter half to two thirds of normal and the subarachnoid space wider than normal, but well myelinated, indicating hypoplasia rather than atrophy of the optic ; lens cataractous, but the remainder of the eye essentially unremarkable and within the normal limits expected for the patient’s age; inflammatory cells: not detected in any of the tissue sect
1
1
LOVD
00417489
Case 2
PubMed: Tosi 2009
proband's mother, the only family member to be screened for mutation - segregation unknown; Case 1 (daughter) and Case 3 (mother) not genetically tested
F
-
-
-
-
-
-
-
SCRA
uncorrected visual acuity right, left eye: 20/25+2, 20/20; anterior segmen: unremarkable without anterior polar cataracts; funduscopy: characteristic chorioretinal atrophy lesions radiating from the optic discs; peripapillary choroidal-retinal atrophy was symmetric in both eyes; no signs of macular edema; scanning laser ophthalmoscopy: autofluorescent pattern was consistent with retinal pigment epithelium and choroidal atrophy along the peripapillary region in both eye; autofluorescent hyperdensity along the edge of the chorioretinal degeneration secondary to the retinal pigment epithelium atrophy; optical coherence tomography examination showed only a remaining thin layer of Bruch���������s membrane after retinal pigment epithelium loss, larger choroidal vessels visible through this area devoid of retinal pigment epithelium cells; electroreti
1
1
LOVD
00417490
1
PubMed: Grubisa 2021
Serbian family, father; more detailed clinical findings in Milenkovic et al.,2005
M
-
Bosnia and Herzegovina
Serbian
-
-
-
-
SCRA
-
1
1
LOVD
00417491
2
PubMed: Grubisa 2021
Serbian family, daughter; more detailed clinical findings in Milenkovic et al.,2006
F
-
Bosnia and Herzegovina
Serbian
-
-
-
-
SCRA
-
1
1
LOVD
00417492
3
PubMed: Grubisa 2021
Serbian family, son; more detailed clinical findings in Milenkovic et al.,2007
M
-
Bosnia and Herzegovina
Serbian
-
-
-
-
SCRA
-
1
1
LOVD
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