Global Variome shared LOVD
CD209 (CD209 molecule)
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Phenotypes for disease #01685 (BVVLS1 (Brown-Vialetto-Van Laere syndrome, type 1 (BVVLS1)), OMIM:211530)
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Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
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Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
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|
Text
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all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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13 entries on 1 page. Showing entries 1 - 13.
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How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000152877
Progressive weakness, muscle wasting and truncal ataxia. Initial presentation: Multiple peripheral neuropathy
-
-
-
-
-
-
-
-
LOVD
00204615
0000152878
Anterior horn neuropathy; Intact cognitive development. Initial presentation: Progressive bulbar palsy
-
-
-
-
-
-
-
-
LOVD
00204616
0000152879
Progressive muscle weakness. Initial presntation: VII nerve palsy, deafness
-
-
-
-
-
-
-
-
LOVD
00204617
0000152880
Poor balance, proximal muscle group weakness. Initial presentation: Deafness, Tongue wasting and fasciculations
-
-
-
-
-
-
-
-
LOVD
00204618
0000152881
Multiple cranial nerve involvement. Initial presentation: Breathing problems
-
-
-
-
-
-
-
-
LOVD
00204619
0000152882
Progressive muscle weakness and wasting, external ophthalmoplegia. Initial presentation: Tongue fasciculations, facial palsy
-
-
-
-
-
-
-
-
LOVD
00204620
0000152883
Hypotonia, cerebellar signs, brisk reflexes in lower limbs, persistent ankle clonus, stridor, EMG: bulbar palsy, anterior horn involvement; phrenic nerve denervation, auditory neuropathy. Initial presentation: Sub-acute encephalopathy
-
-
-
-
-
-
-
-
LOVD
00204621
0000152884
Hypotonia, bulbar palsy, respiratory difficulties. Initial Presentation: Hypotonia, bulbar palsy
-
-
-
-
-
-
-
-
LOVD
00204622
0000152885
General weakness, flaccid. Initial presentation: Breathing difficulties, weakness
-
-
-
-
-
-
-
-
LOVD
00204625
0000155279
visual impairment (HP:0000505); progressive hearing impairment (HP:0000365); no abnormality of the liver (-HP:0001392); no hepatic Wilson disease symptoms, liver biopsy normal; visits regular school
-
BVVLS
Familial, autosomal recessive
10y
05y
-
-
-
Gunnar Schmidt
00207500
0000155299
Visual impairment (HP:0000505) Hearing impairment (HP:0000365)
-
BVVLS
Familial, autosomal recessive
-
-
-
-
-
Gunnar Schmidt
00207521
0000293117
Abnormal nervous system physiology, Visual impairment, Abnormal cranial nerve morphology, Cranial nerve paralysis, Abnormality of eye movement, Dysphagia, Hearing impairment
-
-
Familial, autosomal recessive
50y
-
-
-
-
Andreas Laner
00400076
0000301659
best corrected visual acuity: 1; electroretinogram , rod: non- recordable, cone: non- recordable
-
dystrophy, corneoretinal, crystalline, Bietti (BCD)
Familial, autosomal recessive
63y
-
45y
-
-
LOVD
00409542
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