Global Variome shared LOVD
LOVD v.3.0 Build 30b [
Current LOVD status
]
Register as submitter
|
Log in
View all genes
Create a new gene entry
View all transcripts
Create a new transcript information entry
View all variants
View all variants affecting transcripts
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
Create a new disease information entry
View available phenotype columns
View all screenings
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
Phenotypes for disease #04509 (IMD28 (immunodeficiency, type 28, mycobacteriosis (IMD-28)), OMIM:614889)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
23 entries on 1 page. Showing entries 1 - 23.
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000060672
Immunodeficiency 28, mycobacteriosis (OMIM:614889)
-
-
Familial, autosomal recessive
-
-
-
-
-
Daniel Trujillano
00080794
0000199277
-
-
-
Familial
-
-
-
-
-
LOVD
00260747
0000199359
-
-
-
Familial, autosomal dominant
-
-
-
-
-
LOVD
00260826
0000199360
disseminated M.bovis BCG; multifocal osteomylitis; recurrent pneumonic infections
-
-
-
-
-
-
-
-
LOVD
00260828
0000199361
disseminated Mycobacterium bovis; CMV infection; Note: initial diagnosis HLH
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260829
0000199364
-
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260832
0000199365
complete deficiency
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260833
0000199366
partial deficiency
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260834
0000199367
-
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260835
0000199368
complete
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260836
0000199369
-
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260837
0000199370
-
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260838
0000199371
complete
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260839
0000199372
complete deficiency
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260840
0000199373
complete deficiency
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260841
0000199374
-
-
-
Familial, autosomal recessive
-
-
13m
-
-
LOVD
00260842
0000199375
complete deficiency
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260843
0000199376
-
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260844
0000199377
-
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260845
0000199378
-
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260846
0000199379
complete deficiency
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260847
0000199380
complete
-
-
Familial, autosomal recessive
-
-
-
-
-
LOVD
00260848
0000199381
MSMD
-
-
Familial, autosomal recessive
-
-
5m
-
-
LOVD
00260849
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our
APIs
to retrieve data.
Powered by
LOVD v.3.0
Build 30b
LOVD software ©2004-2024
Leiden University Medical Center
Database contents © by their respective submitters and curators