(used for variant description)
(last modified October 11, 2019)
This file was created to facilitate the description of sequence variants on transcript NM_004370.5 in the COL12A1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_042181.1, covering COL12A1 transcript NM_004370.5.
(upstream sequence)
. . . . g.5046
gcggccgccaggtgctcctggagtgcagcgcctatcgccggggcgt c.-121
. . . . . . g.5106
gtgggggccacaccgagcaccagcttctccgacgccgggaagccgctgtcgccgccgcta c.-61
. . . | 02 . . . g.8115
cctctccctgttgccgccgcctcag | atctcttcatgccgctgtaagctcggaggccaagg c.-1
. . . . . . g.8175
ATGCGGAGTAGGCTTCCCCCAGCGCTTGCCGCCCTGGGCGCGGCCCTGCTCCTGTCTTCC c.60
M R S R L P P A L A A L G A A L L L S S p.20
. | 03 . . . . . g.16007
ATTGAGGCAGAAG | TTGACCCACCTTCAGACTTGAATTTTAAAATTATAGATGAAAATACT c.120
I E A E V | D P P S D L N F K I I D E N T p.40
. . . . . . g.16067
GTTCATATGTCATGGGCAAAACCAGTTGATCCAATTGTGGGTTACAGAATAACGGTGGAC c.180
V H M S W A K P V D P I V G Y R I T V D p.60
. | 04 . . . . . g.18602
CCTACAACGG | ATGGGCCTACTAAAGAATTTACCCTTTCAGCTAGTACCACTGAAACTTTA c.240
P T T D | G P T K E F T L S A S T T E T L p.80
. . . . . . g.18662
TTGTCAGAACTTGTACCTGAAACAGAGTATGTGGTGACAATAACTTCATATGATGAAGTA c.300
L S E L V P E T E Y V V T I T S Y D E V p.100
. . . | 05 . . . g.19173
GAAGAAAGTGTACCAGTTATAGGACAACTAACAA | TTCAAACAGGTAGTTCGACAAAGCCA c.360
E E S V P V I G Q L T I | Q T G S S T K P p.120
. . . | 06 . . . g.21118
GTGGAGAAGAAACCTGGAAAAACCGAGATACAAA | AATGCTCTGTCAGTGCCTGGACTGAT c.420
V E K K P G K T E I Q K | C S V S A W T D p.140
. . . . . . g.21178
TTGGTTTTCCTCGTGGATGGCTCTTGGAGTGTGGGAAGAAATAATTTCAAGTACATTTTA c.480
L V F L V D G S W S V G R N N F K Y I L p.160
. . . . . . g.21238
GACTTCATTGCTGCTCTTGTGTCTGCTTTTGACATTGGGGAAGAGAAGACAAGAGTTGGA c.540
D F I A A L V S A F D I G E E K T R V G p.180
. . . . . . g.21298
GTTGTTCAATACAGCTCTGATACCAGGACTGAATTTAACTTAAATCAGTACTACCAAAGG c.600
V V Q Y S S D T R T E F N L N Q Y Y Q R p.200
. . . . . | 07 g.21528
GATGAACTTCTTGCTGCAATAAAAAAAATTCCATATAAAGGTGGCAACACAATGACAG | GG c.660
D E L L A A I K K I P Y K G G N T M T G | p.220
. . . . . . g.21588
GATGCCATTGATTATTTAGTTAAAAATACTTTCACGGAATCTGCTGGGGCAAGAGTTGGC c.720
D A I D Y L V K N T F T E S A G A R V G p.240
. . . . . . g.21648
TTTCCTAAAGTGGCAATTATTATTACGGATGGAAAATCCCAGGATGAAGTGGAAATTCCA c.780
F P K V A I I I T D G K S Q D E V E I P p.260
. . . . | 08 . . g.22389
GCAAGAGAGCTTCGTAATGTTGGAGTTGAAGTTTTCTCCTTGG | GCATTAAAGCTGCAGAT c.840
A R E L R N V G V E V F S L G | I K A A D p.280
. . . . . . g.22449
GCAAAAGAACTCAAACAAATTGCCTCCACACCTTCACTGAACCATGTTTTCAATGTGGCC c.900
A K E L K Q I A S T P S L N H V F N V A p.300
. . . . . . g.22509
AACTTTGATGCAATTGTGGATATTCAGAATGAGATCATCTCCCAGGTGTGCTCAGGTGTT c.960
N F D A I V D I Q N E I I S Q V C S G V p.320
. . . | 09. . . g.26786
GATGAACAACTTGGTGAATTGGTTAGTGGAGAAGAAG | TTGTTGAGCCTCCTTCAAATTTG c.1020
D E Q L G E L V S G E E V | V E P P S N L p.340
. . . . . . g.26846
ATTGCCATGGAAGTCTCTTCAAAATATGTTAAGCTAAATTGGAATCCATCTCCTAGTCCA c.1080
I A M E V S S K Y V K L N W N P S P S P p.360
. . . . . . g.26906
GTGACTGGCTACAAAGTCATCCTCACACCAATGACTGCAGGAAGCCGACAGCACGCTCTG c.1140
V T G Y K V I L T P M T A G S R Q H A L p.380
. . . . . . g.26966
AGTGTGGGGCCTCAGACAACCACGCTCAGTGTTCGCGACCTCTCAGCAGACACAGAATAC c.1200
S V G P Q T T T L S V R D L S A D T E Y p.400
. . . . . . g.27026
CAGATCAGTGTTTCCGCCATGAAGGGAATGACATCCAGTGAACCCATTTCAATAATGGAG c.1260
Q I S V S A M K G M T S S E P I S I M E p.420
. . | 10 . . . g.27287
AAGACTCAGCCAATGAAAGTTCAAGTGG | AATGCTCACGTGGTGTGGATATAAAAGCCGAT c.1320
K T Q P M K V Q V E | C S R G V D I K A D p.440
. . . . . . g.27347
ATTGTGTTTTTGGTTGATGGCTCCTATAGCATTGGGATTGCAAACTTTGTTAAAGTTAGA c.1380
I V F L V D G S Y S I G I A N F V K V R p.460
. . . . . . g.27407
GCCTTTTTGGAAGTTCTTGTAAAAAGTTTTGAAATTTCACCAAATAGGGTCCAGATTAGT c.1440
A F L E V L V K S F E I S P N R V Q I S p.480
. . . . . . g.27467
CTTGTGCAATACAGCCGGGATCCTCATACTGAGTTCACTTTGAAAAAATTCACCAAAGTT c.1500
L V Q Y S R D P H T E F T L K K F T K V p.500
. . . . . . g.27527
GAAGATATAATTGAAGCAATAAACACCTTCCCTTACAGAGGAGGATCTACAAATACTGGC c.1560
E D I I E A I N T F P Y R G G S T N T G p.520
. . . . . . g.27587
AAAGCAATGACTTATGTCAGAGAGAAAATATTTGTGCCTAGCAAGGGATCAAGAAGCAAT c.1620
K A M T Y V R E K I F V P S K G S R S N p.540
. . . . . . g.27647
GTGCCAAAGGTCATGATTCTTATCACGGATGGGAAATCATCAGATGCTTTCAGAGATCCT c.1680
V P K V M I L I T D G K S S D A F R D P p.560
. . . . . . g.27707
GCGATAAAACTGAGGAATTCAGATGTTGAAATCTTTGCAGTTGGTGTGAAGGATGCCGTT c.1740
A I K L R N S D V E I F A V G V K D A V p.580
. . . . . . g.27767
CGCTCAGAATTGGAAGCTATTGCCTCTCCTCCTGCAGAGACCCATGTGTTCACAGTGGAA c.1800
R S E L E A I A S P P A E T H V F T V E p.600
. . . . . . g.27827
GATTTTGATGCTTTTCAGAGGATATCTTTTGAACTCACACAGTCTATCTGCCTTAGAATT c.1860
D F D A F Q R I S F E L T Q S I C L R I p.620
. . . | 11 . . . g.29725
GAGCAAGAATTGGCAGCTATAAAGAAGAAAG | CTTACGTCCCTCCAAAGGATCTTAGTTTT c.1920
E Q E L A A I K K K A | Y V P P K D L S F p.640
. . . . . . g.29785
TCAGAAGTGACTTCTTATGGTTTCAAAACCAACTGGTCTCCAGCTGGAGAAAATGTTTTT c.1980
S E V T S Y G F K T N W S P A G E N V F p.660
. . . . . . g.29845
TCATATCACATCACCTACAAGGAAGCGGCTGGGGATGATGAGGTCACTGTGGTGGAGCCA c.2040
S Y H I T Y K E A A G D D E V T V V E P p.680
. . . . . . g.29905
GCATCGAGCACCAGTGTTGTTCTCAGCAGCCTGAAGCCAGAGACCTTGTATTTGGTCAAT c.2100
A S S T S V V L S S L K P E T L Y L V N p.700
. . . . . . g.29965
GTGACTGCGGAGTATGAGGATGGCTTCAGCATTCCCTTAGCTGGAGAGGAGACCACCGAA c.2160
V T A E Y E D G F S I P L A G E E T T E p.720
| 12 . . . . . . g.33028
GAAG | TAAAAGGAGCACCTCGAAACCTAAAGGTGACAGATGAGACTACAGATAGTTTCAAA c.2220
E V | K G A P R N L K V T D E T T D S F K p.740
. . . . . . g.33088
ATTACTTGGACTCAAGCTCCAGGGAGAGTTTTAAGATATCGAATTATATATAGACCAGTT c.2280
I T W T Q A P G R V L R Y R I I Y R P V p.760
. . . . . . g.33148
GCTGGTGGAGAGAGCAGAGAAGTTACCACCCCACCCAATCAGAGGAGGAGAACACTGGAG c.2340
A G G E S R E V T T P P N Q R R R T L E p.780
. . . . . . g.33208
AACTTGATTCCAGACACGAAATATGAAGTATCTGTAATTCCTGAATATTTCTCAGGACCT c.2400
N L I P D T K Y E V S V I P E Y F S G P p.800
. . . | 13. . . g.35620
GGTACTCCATTAACTGGAAATGCAGCCACTGAAGAAG | TTAGAGGGAATCCAAGAGACTTA c.2460
G T P L T G N A A T E E V | R G N P R D L p.820
. . . . . . g.35680
AGAGTTTCTGACCCTACGACGTCTACTATGAAATTATCTTGGAGTGGGGCACCAGGAAAA c.2520
R V S D P T T S T M K L S W S G A P G K p.840
. . . . . . g.35740
GTGAAACAGTATCTCGTCACATATACCCCAGTGGCAGGGGGTGAAACTCAAGAGGTCACT c.2580
V K Q Y L V T Y T P V A G G E T Q E V T p.860
. . . . . . g.35800
GTGAGGGGAGATACAACCAATACGGTGCTGCAGGGATTGAAGGAAGGGACACAATACGCC c.2640
V R G D T T N T V L Q G L K E G T Q Y A p.880
. . . . . . g.35860
TTATCTGTGACAGCCTTGTATGCGTCTGGGGCTGGAGACGCCCTCTTTGGTGAAGGAACA c.2700
L S V T A L Y A S G A G D A L F G E G T p.900
. | 14 . . . . . g.45178
ACACTTGAAG | AACGTGGTTCTCCTCAAGATTTAGTTACTAAAGACATCACTGACACATCA c.2760
T L E E | R G S P Q D L V T K D I T D T S p.920
. . . . . . g.45238
ATTGGGGCTTATTGGACATCTGCTCCAGGAATGGTTCGCGGTTACAGGGTCTCATGGAAA c.2820
I G A Y W T S A P G M V R G Y R V S W K p.940
. . . . . . g.45298
TCACTTTATGATGATGTTGACACTGGAGAGAAAAATCTGCCTGAAGATGCAATTCATACG c.2880
S L Y D D V D T G E K N L P E D A I H T p.960
. . . . . . g.45358
ATGATAGAAAATCTGCAGCCAGAGACCAAATACAGAATTTCAGTATTTGCCACTTACAGC c.2940
M I E N L Q P E T K Y R I S V F A T Y S p.980
. . . . | 15 . . g.54401
AGTGGAGAAGGAGAACCTTTGACTGGAGATGCCACAACTGAAT | TATCTCAAGATTCCAAA c.3000
S G E G E P L T G D A T T E L | S Q D S K p.1000
. . . . . . g.54461
ACCCTGAAAGTAGATGAAGAAACAGAAAACACAATGAGAGTTACATGGAAACCAGCACCA c.3060
T L K V D E E T E N T M R V T W K P A P p.1020
. . . . . . g.54521
GGGAAAGTCGTCAACTACCGTGTTGTCTATCGCCCTCATGGGAGAGGGAAGCAAATGGTT c.3120
G K V V N Y R V V Y R P H G R G K Q M V p.1040
. . . . . . g.54581
GCTAAGGTGCCCCCCACAGTCACTTCGACAGTGTTAAAGCGACTTCAGCCACAGACCACA c.3180
A K V P P T V T S T V L K R L Q P Q T T p.1060
. . . . . . g.54641
TATGACATCACAGTTCTTCCTATTTACAAGATGGGAGAAGGAAAGCTTAGGCAAGGATCA c.3240
Y D I T V L P I Y K M G E G K L R Q G S p.1080
. | 16 . . . . . g.55103
GGAACAACAG | CTTCTCGGTTTAAGTCTCCTAGAAACCTCAAAACATCTGACCCAACCATG c.3300
G T T A | S R F K S P R N L K T S D P T M p.1100
. . . . . . g.55163
TCAAGCTTCCGAGTGACTTGGGAGCCTGCCCCTGGGGAAGTGAAGGGTTATAAAGTCACA c.3360
S S F R V T W E P A P G E V K G Y K V T p.1120
. . . . . . g.55223
TTCCACCCTACGGGGGATGACAGAAGACTGGGGGAGTTAGTGGTTGGACCCTATGACAAC c.3420
F H P T G D D R R L G E L V V G P Y D N p.1140
. . | 17 . . . . g.56407
ACAGTTGTTTTGGAGGAACTTAG | GGCTGGTACCACCTATAAAGTAAATGTTTTTGGAATG c.3480
T V V L E E L R | A G T T Y K V N V F G M p.1160
. . . . . . g.56467
TTTGATGGAGGAGAAAGCTCACCACTTGTTGGACAAGAAATGACAACCCTTTCCGACACA c.3540
F D G G E S S P L V G Q E M T T L S D T p.1180
. . | 18 . . . . g.58460
ACTGTTATGCCAATTTTATCTTCTG | GGATGGAGTGTCTCACCAGAGCTGAGGCAGACATT c.3600
T V M P I L S S G | M E C L T R A E A D I p.1200
. . . . . . g.58520
GTGTTGCTGGTGGATGGATCATGGAGCATCGGCCGGGCAAATTTTAGAACCGTGAGGAGT c.3660
V L L V D G S W S I G R A N F R T V R S p.1220
. . . . . | 19 . g.58662
TTCATTTCTCGTATTGTGGAAGTCTTTGACATTGGCCCCAAAAGAGTACAAATTG | CTCTT c.3720
F I S R I V E V F D I G P K R V Q I A | L p.1240
. . . . . . g.58722
GCTCAGTATAGTGGGGATCCCAGAACAGAGTGGCAGTTAAATGCACACAGAGACAAGAAG c.3780
A Q Y S G D P R T E W Q L N A H R D K K p.1260
. . . . . | 20 . g.58881
AGCTTGTTGCAAGCTGTGGCAAACTTGCCGTACAAAGGAGGCAATACTCTCACAG | GCATG c.3840
S L L Q A V A N L P Y K G G N T L T G | M p.1280
. . . . . . g.58941
GCTTTGAATTTCATTCGCCAACAGAACTTCAGGACCCAAGCTGGCATGAGACCTCGAGCT c.3900
A L N F I R Q Q N F R T Q A G M R P R A p.1300
. . . . . . g.59001
CGAAAAATTGGTGTGCTCATTACTGATGGAAAATCACAAGACGATGTTGAAGCACCTTCA c.3960
R K I G V L I T D G K S Q D D V E A P S p.1320
. . . . | 21 . . g.59640
AAGAAACTCAAGGATGAGGGAGTGGAGCTGTTTGCTATTG | GTATTAAAAATGCTGATGAA c.4020
K K L K D E G V E L F A I G | I K N A D E p.1340
. . . . . . g.59700
GTCGAATTAAAGATGATTGCAACTGATCCTGATGATACCCATGCATACAATGTGGCAGAT c.4080
V E L K M I A T D P D D T H A Y N V A D p.1360
. . . . . . g.59760
TTTGAGTCACTCTCCAGGATAGTGGATGATCTCACCATTAATTTGTGTAACAGTGTCAAA c.4140
F E S L S R I V D D L T I N L C N S V K p.1380
| 22. . . . . . g.62463
GGTCCAG | GTGATTTGGAAGCACCTTCTAACTTAGTTATTTCTGAGCGAACCCATCGTTCT c.4200
G P G | D L E A P S N L V I S E R T H R S p.1400
. . . . . . g.62523
TTTAGAGTGAGCTGGACACCACCTTCTGACAGTGTGGATCGATATAAGGTGGAATACTAT c.4260
F R V S W T P P S D S V D R Y K V E Y Y p.1420
. . | 23. . . . g.63136
CCAGTTTCTGGAGGGAAACGTCAAGAA | TTTTATGTGAGTCGAATGGAAACTAGCACAGTG c.4320
P V S G G K R Q E | F Y V S R M E T S T V p.1440
. . . . . . g.63196
CTGAAAGATCTGAAACCTGAAACTGAATATGTTGTCAATGTGTATTCTGTGGTAGAAGAT c.4380
L K D L K P E T E Y V V N V Y S V V E D p.1460
. . . | 24. . . g.64686
GAATATAGTGAGCCTCTGAAGGGGACAGAAAAAACCT | TGCCAGTGCCTGTAGTCAGCCTG c.4440
E Y S E P L K G T E K T L | P V P V V S L p.1480
. . . . . . g.64746
AATATTTATGATGTTGGCCCTACCACCATGCATGTGCAGTGGCAGCCTGTGGGAGGAGCT c.4500
N I Y D V G P T T M H V Q W Q P V G G A p.1500
. . . . . . g.64806
ACTGGCTACATCTTGTCATACAAACCTGTTAAGGACACAGAGCCAACAAGACCCAAAGAG c.4560
T G Y I L S Y K P V K D T E P T R P K E p.1520
| 25 . . . . . . g.65512
| GTGCGTTTGGGGCCAACAGTGAATGACATGCAGCTGACTGACCTTGTTCCCAACACGGAG c.4620
| V R L G P T V N D M Q L T D L V P N T E p.1540
. . . . . . g.65572
TATGCAGTCACAGTCCAGGCTGTCCTGCACGACCTCACTAGTGAACCTGTCACTGTTCGG c.4680
Y A V T V Q A V L H D L T S E P V T V R p.1560
. | 26 . . . . . g.67569
GAAGTCACCT | TGCCTTTACCCAGACCTCAGGATCTGAAACTCAGAGATGTGACTCACAGC c.4740
E V T L | P L P R P Q D L K L R D V T H S p.1580
. . . . . . g.67629
ACTATGAATGTCTTTTGGGAACCTGTGCCTGGAAAAGTGCGTAAATATATTGTTCGATAC c.4800
T M N V F W E P V P G K V R K Y I V R Y p.1600
. . | 27. . . . g.68779
AAAACACCAGAAGAGGATGTCAAAGAG | GTAGAGGTGGACAGATCAGAGACCAGCACTTCC c.4860
K T P E E D V K E | V E V D R S E T S T S p.1620
. . . . . . g.68839
CTCAAAGACCTCTTCTCACAGACCTTGTACACAGTCAGCGTTTCTGCAGTACATGACGAG c.4920
L K D L F S Q T L Y T V S V S A V H D E p.1640
. . . | 28. . . g.71969
GGGGAGTCTCCTCCAGTGACTGCTCAAGAAACTACCC | GACCCGTGCCAGCCCCAACAAAC c.4980
G E S P P V T A Q E T T R | P V P A P T N p.1660
. . . . . . g.72029
TTAAAGATTACTGAAGTAACATCAGAGGGTTTCAGAGGGACTTGGGATCATGGAGCTTCA c.5040
L K I T E V T S E G F R G T W D H G A S p.1680
. . . . . | 29. g.72330
GATGTGTCTCTCTACAGAATAACTTGGGCACCTTTTGGAAGCTCAGATAAGATGGAG | ACC c.5100
D V S L Y R I T W A P F G S S D K M E | T p.1700
. . . . . . g.72390
ATCTTAAATGGAGATGAAAACACTTTGGTGTTCGAAAACCTGAACCCCAACACCATCTAT c.5160
I L N G D E N T L V F E N L N P N T I Y p.1720
. . . . . . g.72450
GAAGTTTCCATTACTGCCATCTATCCTGATGAGTCAGAAAGTGATGACCTGATTGGCAGT c.5220
E V S I T A I Y P D E S E S D D L I G S p.1740
. | 30 . . | 31 . . . g.73357
GAGCGCACAC | TGCCTATCTTAACAACACAAG | CTCCCAAAAGTGGCCCACGAAACCTTCAA c.5280
E R T L | P I L T T Q A | P K S G P R N L Q p.1760
. . . . . . g.73417
GTGTACAATGCAACATCTAACAGCCTGACTGTTAAGTGGGATCCTGCTAGTGGTCGTGTG c.5340
V Y N A T S N S L T V K W D P A S G R V p.1780
. . . . . | 32 . g.76058
CAGAAATATAGGATCACTTATCAGCCTTCCACAGGGGAAGGCAATGAGCAAACG | ACCACA c.5400
Q K Y R I T Y Q P S T G E G N E Q T | T T p.1800
. . . . . . g.76118
ATAGGAGGACGGCAGAACAGTGTGGTCCTGCAGAAACTGAAGCCAGACACTCCTTACACT c.5460
I G G R Q N S V V L Q K L K P D T P Y T p.1820
. . . . . . g.76178
ATCACCGTATCCTCTCTGTATCCTGATGGTGAAGGAGGTCGGATGACGGGAAGAGGCAAG c.5520
I T V S S L Y P D G E G G R M T G R G K p.1840
| 33 . . . . . . g.76966
ACCA | AACCTCTAAACACTGTAAGGAACCTGAGAGTGTATGACCCTTCTACCAGCACCTTG c.5580
T K | P L N T V R N L R V Y D P S T S T L p.1860
. . . . . . g.77026
AATGTCCGCTGGGACCATGCAGAGGGAAATCCTCGTCAGTACAAGCTCTTCTATGCACCA c.5640
N V R W D H A E G N P R Q Y K L F Y A P p.1880
. . | 34 . . . . g.77521
GCAGCAGGTGGTCCAGAGGAACTG | GTACCAATCCCCGGGAATACCAATTATGCCATTCTT c.5700
A A G G P E E L | V P I P G N T N Y A I L p.1900
. . . . . . g.77581
AGGAATCTGCAGCCAGATACCTCATACACTGTGACTGTAGTTCCCGTTTATACTGAAGGT c.5760
R N L Q P D T S Y T V T V V P V Y T E G p.1920
. . . | 35 . . . g.78851
GATGGGGGACGCACATCAGATACTGGAAGGACAT | TGATGAGAGGACTGGCAAGAAATGTC c.5820
D G G R T S D T G R T L | M R G L A R N V p.1940
. . . . . . g.78911
CAAGTATACAATCCTACACCTAACAGCCTCGATGTTCGCTGGGACCCTGCTCCAGGACCT c.5880
Q V Y N P T P N S L D V R W D P A P G P p.1960
. . . . . | 36. g.79929
GTGCTGCAATATCGCGTTGTGTATTCTCCTGTGGATGGCACAAGACCCTCAGAATCT | ATA c.5940
V L Q Y R V V Y S P V D G T R P S E S | I p.1980
. . . . . . g.79989
GTAGTGCCAGGAAACACGCGCATGGTGCATCTGGAGCGGCTGATTCCGGACACACTCTAT c.6000
V V P G N T R M V H L E R L I P D T L Y p.2000
. . . . . . g.80049
TCCGTGAACCTTGTGGCTCTGTACTCGGATGGAGAGGGAAATCCCAGCCCTGCCCAGGGC c.6060
S V N L V A L Y S D G E G N P S P A Q G p.2020
| 37. . . . . . g.80727
CGAACGC | TACCACGCAGTGGACCAAGGAACCTGAGAGTCTTTGGTGAAACAACCAATAGC c.6120
R T L | P R S G P R N L R V F G E T T N S p.2040
. . . . . . g.80787
CTCTCGGTAGCCTGGGATCATGCTGATGGGCCAGTTCAGCAGTACAGGATCATCTATTCT c.6180
L S V A W D H A D G P V Q Q Y R I I Y S p.2060
. . . | 38 . . . g.82512
CCCACTGTTGGTGATCCAATTGATGAATAT | ACCACAGTCCCAGGCAGAAGAAACAATGTA c.6240
P T V G D P I D E Y | T T V P G R R N N V p.2080
. . . . . . g.82572
ATACTGCAGCCCCTGCAACCTGACACTCCATATAAAATTACTGTTATTGCTGTTTATGAA c.6300
I L Q P L Q P D T P Y K I T V I A V Y E p.2100
. . . . | 39 . . g.84457
GATGGAGATGGTGGCCATCTAACAGGAAATGGAAGAACTG | TGGGACTCCTTCCTCCTCAG c.6360
D G D G G H L T G N G R T V | G L L P P Q p.2120
. . . . . . g.84517
AACATACACATCTCTGACGAATGGTATACAAGATTCAGGGTGTCCTGGGATCCTTCACCT c.6420
N I H I S D E W Y T R F R V S W D P S P p.2140
. . . . | 40 . . g.85654
TCTCCAGTTCTTGGATATAAAATAGTATATAAGCCAGTGG | GTTCCAATGAGCCCATGGAA c.6480
S P V L G Y K I V Y K P V G | S N E P M E p.2160
. . . . . . g.85714
GCCTTTGTTGGAGAAATGACATCATATACCTTACACAATCTCAATCCCAGCACCACCTAC c.6540
A F V G E M T S Y T L H N L N P S T T Y p.2180
. . . . . . g.85774
GATGTGAATGTTTATGCTCAATATGATTCTGGACTCAGTGTCCCCTTGACAGATCAAGGC c.6600
D V N V Y A Q Y D S G L S V P L T D Q G p.2200
| 41. . . . . . g.86589
ACTACAT | TATATTTAAATGTAACAGATCTGAAAACTTACCAGATTGGGTGGGATACATTC c.6660
T T L | Y L N V T D L K T Y Q I G W D T F p.2220
. . . . . . g.86649
TGTGTCAAATGGTCACCTCACCGGGCAGCCACCTCCTACAGGCTAAAACTAAGCCCTGCA c.6720
C V K W S P H R A A T S Y R L K L S P A p.2240
| 42 . . . . . . g.86869
GATG | GAACAAGGGGACAAGAAATTACAGTGCGTGGATCAGAAACCAGTCACTGCTTCACT c.6780
D G | T R G Q E I T V R G S E T S H C F T p.2260
. . . . . . g.86929
GGCCTTTCACCAGACACTGATTATGGTGTCACTGTTTTTGTGCAGACACCAAATCTCGAG c.6840
G L S P D T D Y G V T V F V Q T P N L E p.2280
. . . | 43 . . . g.87532
GGACCAGGAGTCTCTGTTAAAGAACATACCA | CTGTGAAACCAACAGAAGCCCCTACAGAG c.6900
G P G V S V K E H T T | V K P T E A P T E p.2300
. . . . | 44 . . g.89480
CCACCCACACCTCCTCCCCCTCCCACCATTCCACCAGCCCGGGATG | TATGCAAAGGGGCC c.6960
P P T P P P P P T I P P A R D V | C K G A p.2320
. . . . . . g.89540
AAGGCAGATATTGTGTTCTTGACTGATGCCTCCTGGAGCATTGGGGACGATAATTTTAAC c.7020
K A D I V F L T D A S W S I G D D N F N p.2340
. . . . . . g.89600
AAAGTTGTAAAATTCATCTTCAATACTGTGGGAGGCTTTGATGAAATCAGTCCTGCTGGG c.7080
K V V K F I F N T V G G F D E I S P A G p.2360
| 45 . . . . . . g.91488
ATTCAG | GTTTCATTTGTGCAATACAGCGATGAGGTCAAGTCTGAGTTCAAGCTGAACACG c.7140
I Q | V S F V Q Y S D E V K S E F K L N T p.2380
. . . . . . g.91548
TACAATGACAAGGCCCTAGCCCTTGGGGCCCTCCAGAATATTAGGTACAGAGGAGGAAAC c.7200
Y N D K A L A L G A L Q N I R Y R G G N p.2400
. | 46 . . . . . g.91771
ACAAGAACAG | GCAAGGCCCTCACGTTTATCAAGGAGAAAGTCTTGACTTGGGAGAGCGGC c.7260
T R T G | K A L T F I K E K V L T W E S G p.2420
. . . . . . g.91831
ATGAGGAAGAATGTCCCTAAGGTGTTGGTTGTGGTCACGGACGGTCGGTCCCAGGATGAG c.7320
M R K N V P K V L V V V T D G R S Q D E p.2440
. . . | 47 . . . g.93387
GTCAAGAAGGCGGCTTTGGTCATCCAGCAGTCAG | GGTTCAGTGTCTTTGTAGTTGGTGTG c.7380
V K K A A L V I Q Q S G | F S V F V V G V p.2460
. . . . . . g.93447
GCTGATGTCGACTACAATGAGCTTGCCAACATTGCCAGCAAACCAAGTGAACGGCACGTG c.7440
A D V D Y N E L A N I A S K P S E R H V p.2480
. . . . . . g.93507
TTCATTGTGGACGACTTTGAATCTTTTGAGAAGATCGAAGACAATCTTATTACATTTGTT c.7500
F I V D D F E S F E K I E D N L I T F V p.2500
. | 48 . . . | 49 g.94987
TGTGAAACTGCCACTTCAA | GTTGTCCTCTCATTTATTTGGATGGCTACACCTCACCAG | GT c.7560
C E T A T S S | C P L I Y L D G Y T S P G | p.2520
. . . . . . g.95047
TTTAAAATGCTTGAAGCATACAACCTGACAGAAAAGAATTTTGCTTCTGTACAAGGAGTA c.7620
F K M L E A Y N L T E K N F A S V Q G V p.2540
. . . . . . g.95107
TCTTTGGAGTCAGGGTCTTTCCCCAGCTACTCAGCATACAGGATTCAGAAGAATGCGTTT c.7680
S L E S G S F P S Y S A Y R I Q K N A F p.2560
. | 50. . . . . g.97206
GTGAATCAGCCTACAGC | AGACCTACACCCAAATGGACTCCCTCCTTCATACACGATTATA c.7740
V N Q P T A | D L H P N G L P P S Y T I I p.2580
. . . . . . g.97266
TTATTATTCAGACTTCTCCCAGAAACTCCCAGTGACCCTTTTGCAATTTGGCAAATCACA c.7800
L L F R L L P E T P S D P F A I W Q I T p.2600
. . . . | 51 . . g.97614
GACAGAGACTACAAACCACAAGTTGGAGTGATTGCAGATC | CTTCTAGCAAGACGTTATCA c.7860
D R D Y K P Q V G V I A D P | S S K T L S p.2620
. . . . . . g.97674
TTCTTTAACAAGGATACAAGAGGCGAGGTGCAAACTGTTACATTTGACACAGAAGAAGTA c.7920
F F N K D T R G E V Q T V T F D T E E V p.2640
. . . | 52 . . . g.101770
AAGACATTATTTTATGGAAGTTTTCACAAG | GTTCATATTGTAGTGACCTCAAAAAGTGTT c.7980
K T L F Y G S F H K | V H I V V T S K S V p.2660
. . . . . . g.101830
AAGATTTACATTGACTGCTATGAAATTATAGAAAAAGACATCAAGGAAGCTGGAAATATA c.8040
K I Y I D C Y E I I E K D I K E A G N I p.2680
. . . . . . g.101890
ACAACTGATGGTTATGAAATTCTTGGAAAACTCCTTAAAGGGGAAAGGAAATCAGCCGCA c.8100
T T D G Y E I L G K L L K G E R K S A A p.2700
| 53 . . . . . . g.104471
| TTCCAAATCCAGAGTTTTGACATTGTCTGCAGTCCAGTGTGGACCAGTAGAGACAGATGC c.8160
| F Q I Q S F D I V C S P V W T S R D R C p.2720
. | 54 . . . . g.105657
TGTGATATTCCCTCTAGG | AGAGATGAGGGAAAATGCCCTGCTTTTCCAAATTCTTGCACA c.8220
C D I P S R | R D E G K C P A F P N S C T p.2740
. . . . | 55 . . g.107112
TGTACACAGGACAGCGTTGGACCTCCAGGACCTCCAGGCCCTGCA | GGAGGACCTGGTGCT c.8280
C T Q D S V G P P G P P G P A | G G P G A p.2760
. . . | 56 . . g.108236
AAAGGTCCCAGAGGTGAAAGAGGTATCAGTGGGGCAATT | GGGCCCCCTGGTCCTCGTGGA c.8340
K G P R G E R G I S G A I | G P P G P R G p.2780
. . . . . . g.108296
GACATAGGTCCTCCAGGCCCCCAGGGTCCTCCAGGCCCTCAGGGACCCAATGGACTCTCT c.8400
D I G P P G P Q G P P G P Q G P N G L S p.2800
. | 57 . . . . . g.108900
ATTCCGGGAGAGCAA | GGTCGCCAAGGGATGAAAGGTGATGCTGGAGAGCCAGGACTTCCA c.8460
I P G E Q | G R Q G M K G D A G E P G L P p.2820
| 58 . . . . . g.109305
GGCCGAACA | GGAACCCCAGGATTACCTGGCCCACCAGGACCAATGGGACCTCCAGGAGAC c.8520
G R T | G T P G L P G P P G P M G P P G D p.2840
| 59 . . . . . | 60. g.115731
AGA | GGCTTCACTGGAAAAGACGGTGCAATGGGACCCAGGGGCCCACCAGGGCCGCCG | GGA c.8580
R | G F T G K D G A M G P R G P P G P P | G p.2860
. . . . . . g.115791
AGCCCAGGCTCCCCAGGAGTCACAGGACCAAGTGGGAAGCCAGGAAAACCTGGAGATCAT c.8640
S P G S P G V T G P S G K P G K P G D H p.2880
| 61 . . . | 62 . . g.119533
GGCAGACCA | GGTCCATCTGGGTTGAAAGGAGAAAAAGGTGATAGG | GGAGACATTGCTTCC c.8700
G R P | G P S G L K G E K G D R | G D I A S p.2900
. . . . . | 63 . g.120617
CAGAACATGATGCGAGCAGTTGCAAGACAAGTCTGTGAACAATTGATAAGTG | GTCAGATG c.8760
Q N M M R A V A R Q V C E Q L I S G | Q M p.2920
. . . . . . g.120677
AACAGATTCAATCAGATGCTGAATCAGATTCCAAATGATTACCAGTCCAGTCGCAACCAG c.8820
N R F N Q M L N Q I P N D Y Q S S R N Q p.2940
. . . . . . g.120737
CCAGGCCCGCCGGGTCCACCGGGACCTCCTGGTAGCGCAGGAGCCAGAGGAGAACCTGGG c.8880
P G P P G P P G P P G S A G A R G E P G p.2960
. . . . . . g.120797
CCTGGGGGGCGGCCAGGCTTCCCGGGCACACCAGGGATGCAGGGACCCCCTGGGGAACGA c.8940
P G G R P G F P G T P G M Q G P P G E R p.2980
| 64 . . . . . . g.121792
G | GTTTGCCAGGAGAGAAAGGTGAAAGGGGTACTGGATCTTCAGGACCTCGGGGGCTGCCT c.9000
G | L P G E K G E R G T G S S G P R G L P p.3000
. | 65 . . . . . g.123210
GGCCCCCCAG | GTCCACAAGGAGAATCCAGAACAGGTCCACCAGGGTCCACAGGTTCAAGA c.9060
G P P G | P Q G E S R T G P P G S T G S R p.3020
. . . . . . g.123270
GGTCCCCCTGGCCCCCCTGGCCGTCCTGGAAACTCAGGTATCCGAGGACCCCCAGGTCCT c.9120
G P P G P P G R P G N S G I R G P P G P p.3040
. . . . . . g.123330
CCTGGATACTGTGATTCTTCTCAGTGTGCCAGCATCCCATACAACGGGCAAGGCTATCCA c.9180
P G Y C D S S Q C A S I P Y N G Q G Y P p.3060
| 66 . g.124409
G | GTTCCGGCTAA c.9192
G | S G X p.3063
. . . . . . g.124469
cacattttctaagtcgccagtgctgcttacagtttgaatacatgaaaatcctgtttctga c.*60
. . . . . . g.124529
gatgtttgcgcacgtgcttattaggaaatgagtctgtatggaaatctcaccacagataat c.*120
. . . . . . g.124589
ggttaacgaaccgggtcgacatcacaaaggagggtggagactctttttactaacttgaat c.*180
. . . . . . g.124649
gagacaaaagcagtggtgtcagtttataatcctgatgcatttcagtaataatgtagaaaa c.*240
. . . . . . g.124709
acattattttaaaaaagttccaacacacagccatgaggagcctcagttttgaaagaggtg c.*300
. . . . . . g.124769
cataataaaactactaaccagaggagtctatgccattttaagaaaaacaattaacctggt c.*360
. . . . . . g.124829
taaagagaaatgtcttatgtaaataataaactaattgtggcttgtaaatgatttgtatgt c.*420
. . . . . . g.124889
gatcctgtcgactaaaatcacttaacaattctacaataagcttctgcatcaaagcctgcc c.*480
. . . . . . g.124949
gcttgctctatgccggaataacaccaaatggaatctcctcatctcttgcttgttagcgat c.*540
. . . . . . g.125009
gtgtctgattcagggcatctgtctttttgttacttttttgtccgtgtcctctcatttggg c.*600
. . . . . . g.125069
ttttgtaactgcaattttcaaaccaaagtttaaaatcaccttttcttcctgttttgctgt c.*660
. . . . . . g.125129
agtcactggtgttcctcacccaccagctgtaactcagtttgtgtgaggtacagccacaga c.*720
. . . . . . g.125189
agatgtcatgtactgtatattacctggtgatagttgcttttcaccccccgagttcagttt c.*780
. . . . . . g.125249
ctaggagccaatgaaacttcccctcacctcctcatctttccaagttgttctttgaattga c.*840
. . . . . . g.125309
ggagtttgaaggcataaacagttacttggggatttgcgaaaatcctacttagttactgcg c.*900
. . . . . . g.125369
tttacagttctttggcccagtctctgacccttcccaagtatttgtgcaatgattgtgttt c.*960
. . . . . . g.125429
actgctggatttttgaaggtttttttttttaagaaagtgccatttcattatttgattatc c.*1020
. . . . . . g.125489
accaaattatctggaaataattgggacattgtaacttatctatttatagttatgagatta c.*1080
. . . . . . g.125549
agactggagtgccatcaccgcgggtgatgatttagcttttgctgtgtgtgtgtgtgtgtg c.*1140
. . . . . . g.125609
ccttccaaatcatgccataattgtaatgttgaatcggacagagccttacgtgcccgaggg c.*1200
. . . . . . g.125669
cggggcctacctgcctgagcgcgagcccttcatcgtgccggtggagcccgagcggacagc c.*1260
. . . . . . g.125729
ggaatacgaggactacggcgcagacgagcctgcagaggagcctcctgagccccaccggcg c.*1320
. . . . . . g.125789
ctggcggcgcgccctgccccacggacccgggcagtgaaccagagatcacgcgccgcgccg c.*1380
. . . . . . g.125849
cgaggcttgggggaggtgttgaaattctcatttacaggtcagatagagcagtgtacgtct c.*1440
. . . . . . g.125909
tttctgaggtgtttcttccagcgttgctcatccaggagtaccctttctgattgtagagaa c.*1500
. . . . . . g.125969
ccttgtttctgcaggaagcctagctccaagcacgcagtctgtagacatttttgcctttgc c.*1560
. . . . . . g.126029
ccttgaaatgcttgcaaaatactttgttaacaaaagctgcaaagagagaacatgccgtgt c.*1620
. . . . . . g.126089
gcctttagttagcacagcgggcagcctcagtgaaactcttaggttaagcagttaagtcct c.*1680
. . . . . . g.126149
ggaacccagagctgctgtgtatttcgagcgggcagtttatcttttgctatacttattttc c.*1740
. . . . . . g.126209
aattcaattacaccacgattcaaataattcccctcctaaaaccaaaaaggagggaaacgt c.*1800
. . . . . . g.126269
caactccattgcaattacttatcttcctcttctatctctgttatacgccggggcatagaa c.*1860
. . . . . . g.126329
tgctcgtatacatctctttaacaaccacaaaccttaagccatgtagatgaagttagtgca c.*1920
. . . . . . g.126389
tcaacgggatacagttccatattgccttaaacctccttgttttagacacactaacattta c.*1980
. . . . . . g.126449
taccaaattgcagattattctgcagagagggaattgcatgtttgtgttgtatatttagta c.*2040
. . . . . . g.126509
tgaacttttttcagaatataatatttcttagttatcaaaagtagttggaaaacatttgca c.*2100
. . . . . . g.126569
agactatgaacatagaattgctgcttttatattttaactgcagattgtgaatttcactgc c.*2160
. . . . . . g.126629
cttatattatttatttctgaaacaaaagaggcatttttcaataaaactactgaaaatttg c.*2220
g.126630
a c.*2221
(downstream sequence)
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