(used for variant description)
(last modified September 2, 2016)
This file was created to facilitate the description of sequence variants on transcript NM_033517.1 in the SHANK3 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_008607.2, covering SHANK3 transcript NM_033517.1.
(upstream sequence)
. . . . . . g.60
ATGGACGGCCCCGGGGCCAGCGCCGTGGTCGTGCGCGTCGGCATCCCGGACCTGCAGCAG c.60
M D G P G A S A V V V R V G I P D L Q Q p.20
| 02 . . . . . . g.463
ACG | AAGTGCCTGCGCCTGGACCCGGCCGCGCCCGTGTGGGCCGCCAAGCAGCGCGTGCTC c.120
T | K C L R L D P A A P V W A A K Q R V L p.40
. . . . . . g.523
TGCGCCCTCAACCACAGCCTCCAGGACGCGCTCAACTATGGGCTTTTCCAGCCGCCCTCC c.180
C A L N H S L Q D A L N Y G L F Q P P S p.60
. . . . . . g.583
CGGGGCCGCGCCGGCAAGTTCCTGGATGAGGAGCGGCTCCTGCAGGAGTACCCGCCCAAC c.240
R G R A G K F L D E E R L L Q E Y P P N p.80
. . | 03. . . . g.2013
CTGGACACGCCCCTGCCCTACCTGGAG | TTTCGATACAAGCGGCGAGTTTATGCCCAGAAC c.300
L D T P L P Y L E | F R Y K R R V Y A Q N p.100
. . . | 04 . . g.3964
CTCATCGATGATAAGCAGTTTGCAAAGCTTCACACAAAG | GCGAACCTGAAGAAGTTCATG c.360
L I D D K Q F A K L H T K | A N L K K F M p.120
. . . . . . g.4024
GACTACGTCCAGCTGCATAGCACGGACAAGGTGGCACGCCTGTTGGACAAGGGGCTGGAC c.420
D Y V Q L H S T D K V A R L L D K G L D p.140
. . | 05 . . . g.4159
CCCAACTTCCATGACCCTGACTCAGGAG | AGTGCCCCCTGAGCCTCGCAGCCCAGCTGGAC c.480
P N F H D P D S G E | C P L S L A A Q L D p.160
. . . . . . g.4219
AACGCCACGGACCTGCTAAAGGTGCTGAAGAATGGTGGTGCCCACCTGGACTTCCGCACT c.540
N A T D L L K V L K N G G A H L D F R T p.180
. . . . . . g.4279
CGCGATGGGCTCACTGCCGTGCACTGTGCCACACGCCAGCGGAATGCGGCAGCACTGACG c.600
R D G L T A V H C A T R Q R N A A A L T p.200
| 06 . . . . . . g.4437
| ACCCTGCTGGACCTGGGGGCTTCACCTGACTACAAGGACAGCCGCGGCTTGACACCCCTC c.660
| T L L D L G A S P D Y K D S R G L T P L p.220
. . . . . . g.4497
TACCACAGCGCCCTGGGGGGTGGGGATGCCCTCTGCTGTGAGCTGCTTCTCCACGACCAC c.720
Y H S A L G G G D A L C C E L L L H D H p.240
. . . . | 07 . g.4682
GCTCAGCTGGGGATCACCGACGAGAATGGCTGGCAGGAGATCCACCAG | GCCTGCCGCTTT c.780
A Q L G I T D E N G W Q E I H Q | A C R F p.260
. . . . . . g.4742
GGGCACGTGCAGCATCTGGAGCACCTGCTGTTCTATGGGGCAGACATGGGGGCCCAGAAC c.840
G H V Q H L E H L L F Y G A D M G A Q N p.280
. . . . | 08 . . g.8713
GCCTCGGGGAACACAGCCCTGCACATCTGTGCCCTCTACAACCAG | GAGAGCTGTGCTCGT c.900
A S G N T A L H I C A L Y N Q | E S C A R p.300
. . . . . . g.8773
GTCCTGCTCTTCCGTGGAGCTAACAGGGATGTCCGCAACTACAACAGCCAGACAGCCTTC c.960
V L L F R G A N R D V R N Y N S Q T A F p.320
| 09 . . . . . . g.10000
CAG | GTGGCCATCATCGCAGGGAACTTTGAGCTTGCAGAGGTTATCAAGACCCACAAAGAC c.1020
Q | V A I I A G N F E L A E V I K T H K D p.340
. | 10 . . . . . g.20183
TCGGATGTTG | TACCATTCAGGGAAACCCCCAGCTATGCGAAGCGGCGGCGACTGGCTGGC c.1080
S D V V | P F R E T P S Y A K R R R L A G p.360
. . . . . . g.20243
CCCAGTGGCTTGGCATCCCCTCGGCCTCTGCAGCGCTCAGCCAGCGATATCAACCTGAAG c.1140
P S G L A S P R P L Q R S A S D I N L K p.380
. . . . . . g.20303
GGGGAGGCACAGCCAGCAGCTTCTCCTGGACCCTCGCTGAGAAGCCTCCCCCACCAGCTG c.1200
G E A Q P A A S P G P S L R S L P H Q L p.400
. . . . . . g.20363
CTGCTCCAGCGGCTGCAAGAGGAGAAAGATCGTGACCGGGATGCCGACCAGGAGAGCAAC c.1260
L L Q R L Q E E K D R D R D A D Q E S N p.420
. . . . | 11 . . g.23183
ATCAGTGGCCCTTTAGCAGGCAGGGCCGGCCAAAGCAAGATCAG | CCCGAGCGGGCCCGGC c.1320
I S G P L A G R A G Q S K I S | P S G P G p.440
. . . . . . g.23243
GGCCCCGGCCCCGCGCCCGGCCCCGGCCCCGCGCCCCCTGCGCCCCCCGCACCGCCGCCC c.1380
G P G P A P G P G P A P P A P P A P P P p.460
. . . . . . g.23303
CGGGGCCCGAAGCGGAAACTTTACAGCGCCGTCCCCGGCCGCAAGTTCATCGCCGTGAAG c.1440
R G P K R K L Y S A V P G R K F I A V K p.480
. . . . . | 12 g.24337
GCGCACAGCCCGCAGGGTGAAGGCGAGATCCCGCTGCACCGCGGCGAGGCCGTGAAGG | TG c.1500
A H S P Q G E G E I P L H R G E A V K V | p.500
. . . . . . g.24397
CTCAGCATTGGGGAGGGCGGTTTCTGGGAGGGAACCGTGAAAGGCCGCACGGGCTGGTTC c.1560
L S I G E G G F W E G T V K G R T G W F p.520
. . . . . | 13 . g.29513
CCGGCCGACTGCGTGGAGGAAGTGCAGATGAGGCAGCATGACACACGGCCTG | AAACGCGG c.1620
P A D C V E E V Q M R Q H D T R P E | T R p.540
. . . . . . g.29573
GAGGACCGGACGAAGCGGCTCTTTCGGCACTACACAGTGGGCTCCTACGACAGCCTCACC c.1680
E D R T K R L F R H Y T V G S Y D S L T p.560
| 14 . . . . . g.29863
TCACACAG | CGATTATGTCATTGATGACAAAGTGGCTGTCCTGCAGAAACGGGACCACGAG c.1740
S H S | D Y V I D D K V A V L Q K R D H E p.580
. . . | 15 . . . g.30412
GGCTTTGGTTTTGTGCTCCGGGGAGCCAAAG | CAGAGACCCCCATCGAGGAGTTCACGCCC c.1800
G F G F V L R G A K A | E T P I E E F T P p.600
. . . . . . g.30472
ACGCCAGCCTTCCCGGCGCTGCAGTATCTCGAGTCGGTGGACGTGGAGGGTGTGGCCTGG c.1860
T P A F P A L Q Y L E S V D V E G V A W p.620
. . . | 16 . . . g.30633
AGGGCCGGGCTGCGCACGGGAGACTTCCTCATCGAG | GTGAACGGGGTGAACGTGGTGAAG c.1920
R A G L R T G D F L I E | V N G V N V V K p.640
. . . . . . g.30693
GTCGGACACAAGCAGGTGGTGGCTCTGATTCGCCAGGGTGGCAACCGCCTCGTCATGAAG c.1980
V G H K Q V V A L I R Q G G N R L V M K p.660
. . . . | 17 . g.31728
GTTGTGTCTGTGACAAGGAAGCCAGAAGAGGACGGGGCTCGGCGCAGAG | CCCCACCGCCC c.2040
V V S V T R K P E E D G A R R R A | P P P p.680
. . . . . . g.31788
CCCAAGAGGGCCCCCAGCACCACACTGACCCTGCGCTCCAAGTCCATGACAGCTGAGCTC c.2100
P K R A P S T T L T L R S K S M T A E L p.700
. | 18 . . | 19 . . . g.40588
GAGGAACTTG | CCTCCATTCGGAGAAGAAAAGGGG | AGAAGCTGGACGAGATGCTGGCAGCC c.2160
E E L A | S I R R R K G E | K L D E M L A A p.720
. . . . . . g.40648
GCCGCAGAGCCAACGCTGCGGCCAGACATCGCAGACGCAGACTCCAGAGCCGCCACCGTC c.2220
A A E P T L R P D I A D A D S R A A T V p.740
. . . . | 20 . . g.41329
AAACAGAGGCCCACCAGTCGGAGGATCACACCCGCCGAGATTAGC | TCATTGTTTGAACGC c.2280
K Q R P T S R R I T P A E I S | S L F E R p.760
. . . . . . g.41389
CAGGGCCTCCCAGGCCCAGAGAAGCTGCCGGGCTCCTTGCGGAAGGGGATTCCACGGACC c.2340
Q G L P G P E K L P G S L R K G I P R T p.780
. | 21 . . . . . g.45879
AAGTCTGTAG | GGGAGGACGAGAAGCTGGCGTCCCTGCTGGAAGGGCGCTTCCCGCGGAGC c.2400
K S V G | E D E K L A S L L E G R F P R S p.800
. . . . . . g.45939
ACCTCGATGCAAGACCCGGTGCGCGAGGGTCGCGGCATCCCGCCCCCGCCGCAGACCGCG c.2460
T S M Q D P V R E G R G I P P P P Q T A p.820
. . . . . . g.45999
CCGCCTCCCCCGCCCGCGCCCTACTACTTCGACTCGGGGCCGCCCCCGGCCTTCTCGCCG c.2520
P P P P P A P Y Y F D S G P P P A F S P p.840
. . . . . . g.46059
CCGCCCCCGCCGGGCCGCGCCTACGACACGGTGCGCTCCAGCTTCAAGCCCGGCCTGGAG c.2580
P P P P G R A Y D T V R S S F K P G L E p.860
. . . . . . g.46119
GCGCGCCTGGGCGCGGGCGCTGCCGGCCTGTACGAGCCGGGCGCGGCCCTCGGCCCGCTG c.2640
A R L G A G A A G L Y E P G A A L G P L p.880
. . . . . . g.46179
CCGTATCCCGAGCGGCAGAAGCGCGCGCGCTCCATGATCATCCTGCAGGACTCGGCGCCC c.2700
P Y P E R Q K R A R S M I I L Q D S A P p.900
. . . . . . g.46239
GAGTCGGGCGACGCCCCTCGACCCCCGCCCGCGGCCACCCCGCCCGAGCGACCCAAGCGC c.2760
E S G D A P R P P P A A T P P E R P K R p.920
. . . . . . g.46299
CGGCCGCGGCCGCCCGGCCCCGACAGCCCCTACGCCAACCTGGGCGCCTTCAGCGCCAGC c.2820
R P R P P G P D S P Y A N L G A F S A S p.940
. . . . . . g.46359
CTCTTCGCTCCGTCCAAGCCGCAGCGCCGCAAGAGCCCCCTGGTGAAGCAGCTGCAGGTG c.2880
L F A P S K P Q R R K S P L V K Q L Q V p.960
. . . . . . g.46419
GAGGACGCGCAGGAGCGCGCGGCCCTGGCCGTGGGCAGCCCCGGTCCCGGCGGCGGCAGC c.2940
E D A Q E R A A L A V G S P G P G G G S p.980
. . . . . . g.46479
TTCGCCCGCGAGCCCTCCCCGACCCACCGCGGTCCGCGCCCGGGTGGCCTCGACTACGGC c.3000
F A R E P S P T H R G P R P G G L D Y G p.1000
. . . . . . g.46539
GCGGGCGATGGCCCGGGGCTCGCGTTCGGCGGCCCGGGCCCGGCCAAGGACCGGCGGCTG c.3060
A G D G P G L A F G G P G P A K D R R L p.1020
. . . . . . g.46599
GAGGAGCGGCGCCGCTCCACTGTGTTCCTGTCCGTGGGGGCCATCGAGGGCAGCGCCCCC c.3120
E E R R R S T V F L S V G A I E G S A P p.1040
. . . . . . g.46659
GGCGCGGATCTGCCATCCCTACAGCCCTCCCGCTCCATCGACGAGCGCCTCCTGGGGACC c.3180
G A D L P S L Q P S R S I D E R L L G T p.1060
. . . . . . g.46719
GGCCCCACCGCCGGCCGCGACCTGCTGCTGCCCTCCCCGGTGTCTGCCCTGAAGCCGTTG c.3240
G P T A G R D L L L P S P V S A L K P L p.1080
. . . . . . g.46779
GTCAGCGGCCCGAGCCTGGGGCCCTCGGGTTCCACCTTCATCCACCCACTCACCGGCAAA c.3300
V S G P S L G P S G S T F I H P L T G K p.1100
. . . . . . g.46839
CCCCTGGACCCCAGCTCACCCCTGGCCCTTGCCCTGGCTGCCCGAGAGCGAGCTCTGGCC c.3360
P L D P S S P L A L A L A A R E R A L A p.1120
. . . . . . g.46899
TCCCAGGCGCCCTCCCGGTCCCCCACACCCGTGCACAGTCCCGACGCCGACCGCCCCGGA c.3420
S Q A P S R S P T P V H S P D A D R P G p.1140
. . . . . . g.46959
CCCCTGTTTGTGGATGTACAGGCCCGGGACCCAGAGCGAGGGTCCCTGGCTTCCCCGGCT c.3480
P L F V D V Q A R D P E R G S L A S P A p.1160
. . . . . . g.47019
TTCTCCCCACGGAGCCCAGCCTGGATTCCTGTGCCTGCTCGCAGGGAGGCAGAGAAGGTC c.3540
F S P R S P A W I P V P A R R E A E K V p.1180
. . . . . . g.47079
CCCCGGGAGGAGCGGAAGTCACCCGAGGACAAGAAGTCCATGATCCTCAGCGTCCTGGAC c.3600
P R E E R K S P E D K K S M I L S V L D p.1200
. . . . . . g.47139
ACATCCCTGCAGCGGCCAGCTGGCCTCATCGTTGTGCACGCCACCAGCAACGGGCAGGAG c.3660
T S L Q R P A G L I V V H A T S N G Q E p.1220
. . . . . . g.47199
CCCAGCAGGCTGGGGGGGGCCGAAGAGGAGCGCCCGGGCACCCCGGAGTTGGCCCCGGCC c.3720
P S R L G G A E E E R P G T P E L A P A p.1240
. . . . . . g.47259
CCCATGCAGTCAGCGGCTGTGGCAGAGCCCCTGCCCAGCCCCCGGGCCCAGCCCCCTGGT c.3780
P M Q S A A V A E P L P S P R A Q P P G p.1260
. . . . . . g.47319
GGCACCCCGGCAGACGCCGGGCCAGGCCAGGGCAGCTCAGAGGAAGAGCCAGAGCTGGTG c.3840
G T P A D A G P G Q G S S E E E P E L V p.1280
. . . . . . g.47379
TTTGCTGTGAACCTGCCACCTGCCCAGCTGTCGTCCAGCGATGAGGAGACCAGGGAGGAG c.3900
F A V N L P P A Q L S S S D E E T R E E p.1300
. . . . . . g.47439
CTGGCCCGAATTGGGTTGGTGCCACCCCCTGAAGAGTTTGCCAACGGGGTCCTGCTGGCC c.3960
L A R I G L V P P P E E F A N G V L L A p.1320
. . . . . . g.47499
ACCCCACTCGCTGGCCCGGGCCCCTCGCCCACCACGGTGCCCAGCCCGGCCTCAGGGAAG c.4020
T P L A G P G P S P T T V P S P A S G K p.1340
. . . . . . g.47559
CCCAGCAGTGAGCCACCCCCTGCCCCTGAGTCTGCAGCCGACTCTGGGGTGGAGGAGGCT c.4080
P S S E P P P A P E S A A D S G V E E A p.1360
. . . . . . g.47619
GACACACGCAGCTCCAGCGACCCCCACCTGGAGACCACAAGCACCATCTCCACGGTGTCC c.4140
D T R S S S D P H L E T T S T I S T V S p.1380
. . . . . . g.47679
AGCATGTCCACCTTGAGCTCGGAGAGCGGGGAACTCACTGACACCCACACCTCCTTCGCT c.4200
S M S T L S S E S G E L T D T H T S F A p.1400
. . . . . . g.47739
GACGGACACACTTTTCTACTCGAGAAGCCACCAGTGCCTCCCAAGCCCAAGCTCAAGTCC c.4260
D G H T F L L E K P P V P P K P K L K S p.1420
. . . . . . g.47799
CCGCTGGGGAAGGGGCCGGTGACCTTCAGGGACCCGCTGCTGAAGCAGTCCTCGGACAGC c.4320
P L G K G P V T F R D P L L K Q S S D S p.1440
. . . . . . g.47859
GAGCTCATGGCCCAGCAGCACCACGCCGCCTCTGCCGGGCTGGCCTCTGCCGCCGGGCCT c.4380
E L M A Q Q H H A A S A G L A S A A G P p.1460
. . . . . . g.47919
GCCCGCCCTCGCTACCTCTTCCAGAGAAGGTCCAAGCTATGGGGGGACCCCGTGGAGAGC c.4440
A R P R Y L F Q R R S K L W G D P V E S p.1480
. . . . . . g.47979
CGGGGGCTCCCTGGGCCTGAAGACGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGC c.4500
R G L P G P E D D K P T V I S E L S S R p.1500
. . . . . . g.48039
CTGCAGCAGCTGAACAAGGACACGCGTTCCCTGGGGGAGGAACCAGTTGGTGGCCTGGGC c.4560
L Q Q L N K D T R S L G E E P V G G L G p.1520
. . . . | 22 . . g.56382
AGCCTGCTGGACCCTGCCAAGAAGTCGCCCATCGCAGCAGCTCG | GCTCTTCAGCAGCCTC c.4620
S L L D P A K K S P I A A A R | L F S S L p.1540
. . . . . . g.56442
GGTGAGCTGAGCTCCATTTCAGCGCAGCGCAGCCCCGGGGGCCCGGGCGGCGGGGCCTCG c.4680
G E L S S I S A Q R S P G G P G G G A S p.1560
. . . . . . g.56502
TACTCGGTGAGGCCCAGTGGCCGCTACCCCGTGGCGAGACGCGCCCCGAGCCCGGTGAAG c.4740
Y S V R P S G R Y P V A R R A P S P V K p.1580
. . . . . . g.56562
CCCGCGTCGCTGGAGCGGGTGGAGGGGCTGGGGGCGGGCGCGGGGGGCGCAGGGCGGCCC c.4800
P A S L E R V E G L G A G A G G A G R P p.1600
. . . . . . g.56622
TTCGGCCTCACGCCCCCCACCATCCTCAAGTCGTCCAGCCTCTCCATCCCGCACGAGCCC c.4860
F G L T P P T I L K S S S L S I P H E P p.1620
. . . . . . g.56682
AAGGAGGTGCGCTTCGTGGTGCGCAGCGTGAGCGCGCGCAGTCGCTCCCCCTCGCCGTCG c.4920
K E V R F V V R S V S A R S R S P S P S p.1640
. . . . . . g.56742
CCGCTGCCCTCGCCCGCGTCCGGCCCCGGCCCCGGCGCCCCCGGCCCACGCCGACCCTTC c.4980
P L P S P A S G P G P G A P G P R R P F p.1660
. . . . . . g.56802
CAGCAGAAGCCGCTGCAGCTCTGGAGCAAGTTCGACGTGGGCGACTGGCTGGAGAGCATC c.5040
Q Q K P L Q L W S K F D V G D W L E S I p.1680
. . . . . . g.56862
CACCTAGGCGAGCACCGCGACCGCTTCGAGGACCATGAGATAGAAGGCGCGCACCTACCC c.5100
H L G E H R D R F E D H E I E G A H L P p.1700
. . . . . . g.56922
GCGCTTACCAAGGACGACTTCGTGGAGCTGGGCGTCACGCGCGTGGGCCACCGCATGAAC c.5160
A L T K D D F V E L G V T R V G H R M N p.1720
. . . g.56958
ATCGAGCGCGCGCTCAGGCAGCTGGACGGCAGCTGA c.5196
I E R A L R Q L D G S X p.1731
. . . . . . g.57018
cgccccacccccactcccgccccggccgtgccctgccggcagggccccccacccccaccc c.*60
. . . . . . g.57078
cgggccgcgggctcggcctgccccttacgacggcgcccgggccaggaatgttgcatgaat c.*120
. . . . . . g.57138
cgtcctgtttgctgttgctcggagactcgccctgtacattgcttagtgccctcaccggcc c.*180
. . . . . . g.57198
gcccagcccacccagcgcacagtcaggaagggcgtggaccagggaggctggggcgggagg c.*240
. . . . . . g.57258
tgccgggggtggggtgccctagcgtgaccacctccttcgcagctcctggtggccattctc c.*300
. . . . . . g.57318
ccagagggggaacctagtccagcatgcgaggtcaggacccgccttggtgactcgggggga c.*360
. . . . . . g.57378
ggggggagacattgggattctcgatgggggccaaggagcccccctgttttgcatatttta c.*420
. . . . . . g.57438
atccactctatatttggaacgagaaaaggaacaaatatctctgtccgtaatagtttcctc c.*480
. . . . . . g.57498
tcccctcccttctacttccactggtcccactgcagctgcccagtcttccatctccggccc c.*540
. . . . . . g.57558
ctcactgccactgccaccccacaacggggcaggggacgctccagctggtctggggttggc c.*600
. . . . . . g.57618
cagggccctagtggcccgccctggggccccagctcggcccctcgcctcgctgagctctag c.*660
. . . . . . g.57678
tgtgccccaccgacccttcaggtgctgctcgtggtgggaggggcggcaggccgcgggtcc c.*720
. . . . . . g.57738
tgctgtgcacccgcgggaccagccggcctgggagaccatcggccgggggggatgagggca c.*780
. . . . . . g.57798
gggccctgccgctccaccgcagccatcttcctcacagggtctctccccaaggagggggct c.*840
. . . . . . g.57858
agcttggtccccatgctcttgggcaactacagcagagaagcctccctgccttggacccca c.*900
. . . . . . g.57918
aagtctcctgtcctgccctttatgtgtgtgggtgaaactgggtgcgtctgagcacgtggg c.*960
. . . . . . g.57978
agccgtgtgtgtgcctgattactgagtggccaccaggggccgctctggactagcgcgggg c.*1020
. . . . . . g.58038
ccgtggaggcgtgcaccgtgtgcatgcgtggggtgtacctgtgagagcaccctgtctcct c.*1080
. . . . . . g.58098
cttccaaagaaagtcagaggccatcctgcaccctgggtccagctgtttgcccagcctgtc c.*1140
. . . . . . g.58158
cttccagagcctcacccagcctgagcggggttccctggtgaatccctgctgcttggggag c.*1200
. . . . . . g.58218
gccccaagggccccttggaggcagcgcccccaccttgggcttctgagggcatcatagggg c.*1260
. . . . . . g.58278
gacccctagagtcagttcaccacaggccctggggagagtcaaagacccccgagggtgccc c.*1320
. . . . . . g.58338
agccccccacactgtgactcctcacactcagcgatgacctgtggggtggggggccctggg c.*1380
. . . . . . g.58398
acgtttttaaacctagggtttggagtctggactaagctccatccacgtcactcacaagtt c.*1440
. . . . . . g.58458
tctgtttatatttctagctttttttaataaaataaaaaaaaaaagaaaacagaagttttc c.*1500
. . . . . . g.58518
acaacccaggggcctggcacgccggtctgtgcctgcccgccccgccctggcccaccggcc c.*1560
. . . . . . g.58578
ccactccctgggcacagagtcacacccactcatccttccgccaacagtccaggtcacaca c.*1620
. . . . . . g.58638
gcagcagtcactgtaacagactgccacatacacactcggtctcacactcacctgtgggtt c.*1680
. . . . . . g.58698
ttggttccgttcaatttgggtttttaactttacagggtcagttccgcttcacctcctttt c.*1740
. . . . . . g.58758
gtatggagttccatccggggggtttcaccccctgctccagtcctgaggcctcctgaccct c.*1800
. . . . . . g.58818
gacgttgtgatacgccccacagagatctatgtttcttatattattattattgataataat c.*1860
. . . . g.58858
tattataatattattatgtaataaatttataagaaatgaa c.*1900
(downstream sequence)
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