Global Variome shared LOVD
MLL3 (myeloid/lymphoid or mixed-lineage leukemia 3)
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All screenings for gene MLL3
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA (genomic DNA), RNA (cDNA) or protein
All options:
DNA
RNA = RNA (cDNA)
protein
? = unknown
Technique
: technique(s) used to identify the sequence variant.
All options:
? = unknown
ARMS = amplification refractory mutation system
arrayCGH = array for Comparative Genomic Hybridisation
arrayMET = array for methylation analysis
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
ASO = allele-specific oligo hybridisation
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
COBRA = Combined Bisulfite Restriction Analysis
CSCE = Conformation Sensitive Capillary Electrophoresis
CSGE = Conformation Sensitive Gel Electrophoresis
ddF = dideoxy Fingerprinting
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
DSCA = Double-Strand DNA Conformation Analysis
DSDI = Detection Small Deletions and Insertions
EMC = Enzymatic Mismatch Cleavage
expr = expression analysis
FISH = Fluorescent In-Situ Hybridisation
FISHf = fiberFISH
HD = HeteroDuplex analysis
HPLC = High-Performance Liquid Chromatography
IEF = IsoElectric Focussing
IHC = Immuno-Histo-Chemistry
Invader = Invader assay
MAPH = Multiplex Amplifiable Probe Hybridisation
MAQ = Multiplex Amplicon Quantification
MCA = Melting Curve Analysis, high-resolution (HRMA)
microscope = microscopic analysis (karyotype)
microsat = microsatellite genotyping
minigene = expression minigene construct
MIP = Molecular Inversion Probe amplification
MIPsm = single molecule Molecular Inversion Probe amplification
MLPA = Multiplex Ligation-dependent Probe Amplification
MLPA-ms = Multiplex Ligation-dependent Probe Amplification, methylation specific
MS = mass spectrometry
Northern = Northern blotting
NUC = nuclease digestion (RNAseT1, S1)
OM = optical mapping
PAGE = Poly-Acrylamide Gel-Electrophoresis
PCR = Polymerase Chain Reaction
PCRdd = PCR, digital droplet
PCRdig = PCR + restriction enzyme digestion
PCRh = PCR, haloplex
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRms = PCR, methylation sensitive
PCRq = PCR, quantitative (qPCR)
PCRrp = PCR, repeat-primed (RP-PCR)
PCRsqd = PCR, semi-quantitative duplex
PE = primer extension (APEX, SNaPshot)
PEms = primer extension, methylation-sensitive single-nucleotide
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
PTT = Protein Truncation Test
RFLP = Restriction Fragment Length Polymorphisms
RT-PCR = Reverse Transcription and PCR
RT-PCRq = Reverse Transcription and PCR, quantitative
SBE = Single Base Extension
SEQ = SEQuencing (Sanger)
SEQb = bisulfite SEQuencing
SEQp = pyroSequencing
SEQms = sequencing, methylation specific
SEQ-ON = next-generation sequencing - Oxford Nanopore
SEQ-NG = next-generation sequencing
SEQ-NG-RNA = next-generation sequencing RNA
SEQ-NG-H = next-generation sequencing - Helicos
SEQ-NG-I = next-generation sequencing - Illumina/Solexa
SEQ-NG-IT = next-generation sequencing - Ion Torrent
SEQ-NG-R = next-generation sequencing - Roche/454
SEQ-NG-S = next-generation sequencing - SOLiD
SEQ-PB = next-generation sequencing - Pacific Biosciences
SNPlex = SNPlex
Southern = Southern blotting
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = fluorescent SSCA (SSCP)
STR = Short Tandem Repeat
TaqMan = TaqMan assay
Western = Western blotting
- = not applicable
Tissue
: tissue type used for analysis
Remarks
: remarks regarding the screening like WGS (whole genome sequencing), WES (whole exome sequencing, gene panel (incl. a list of genes analysed), etc.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
61 entries on 1 page. Showing entries 1 - 61.
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Legend
How to query
Screening ID
Individual ID
Template
Technique
Tissue
Remarks
Variants found
Owner
0000312593
00311423
DNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000312594
00311424
DNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000312595
00311425
DNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313140
00311968
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313141
00311969
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313142
00311970
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313143
00311971
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313144
00311972
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313145
00311973
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313146
00311974
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313147
00311975
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313148
00311976
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313149
00311977
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313150
00311978
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313151
00311979
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313152
00311980
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313153
00311981
DNA;RNA
SEQ;SEQ-NG
-
WES
1
Johan den Dunnen
0000313220
00312048
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313221
00312049
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313222
00312050
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313223
00312051
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313224
00312052
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313225
00312053
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313226
00312054
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313227
00312055
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313228
00312056
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313229
00312057
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313230
00312058
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313231
00312059
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313232
00312060
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313233
00312061
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313234
00312062
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313235
00312063
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313236
00312064
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313237
00312065
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313238
00312066
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313239
00312067
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313240
00312068
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313241
00312069
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313242
00312070
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313243
00312071
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313244
00312072
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313245
00312073
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313246
00312074
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313247
00312075
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313248
00312076
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313249
00312077
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313250
00312078
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313251
00312079
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313252
00312080
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313253
00312081
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313254
00312082
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313255
00312083
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313256
00312084
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313257
00312085
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313258
00312086
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313259
00312087
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000313260
00312088
DNA
arrayCGH
-
-
1
Johan den Dunnen
0000399859
00398614
DNA
SEQ-NG-I
-
-
1
Andreas Laner
0000460151
00458529
DNA
SEQ-NG-I
Blood
-
1
Andreas Laner
0000462676
00461044
DNA;RNA
RT-PCR;SEQ;SEQ-NG
fibroblasts
mRNA splicing analysis on tissue
1
Tjakko van Ham
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Legend
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