Global Variome shared LOVD
PSAP (prosaposin)
LOVD v.3.0 Build 30b [
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Curator:
Mirella Filocamo
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All screenings for gene PSAP
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA (genomic DNA), RNA (cDNA) or protein
All options:
DNA
RNA = RNA (cDNA)
protein
? = unknown
Technique
: technique(s) used to identify the sequence variant.
All options:
? = unknown
ARMS = amplification refractory mutation system
arrayCGH = array for Comparative Genomic Hybridisation
arrayMET = array for methylation analysis
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
ASO = allele-specific oligo hybridisation
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
COBRA = Combined Bisulfite Restriction Analysis
CSCE = Conformation Sensitive Capillary Electrophoresis
CSGE = Conformation Sensitive Gel Electrophoresis
ddF = dideoxy Fingerprinting
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
DSCA = Double-Strand DNA Conformation Analysis
DSDI = Detection Small Deletions and Insertions
EMC = Enzymatic Mismatch Cleavage
expr = expression analysis
FISH = Fluorescent In-Situ Hybridisation
FISHf = fiberFISH
HD = HeteroDuplex analysis
HPLC = High-Performance Liquid Chromatography
IEF = IsoElectric Focussing
IHC = Immuno-Histo-Chemistry
Invader = Invader assay
MAPH = Multiplex Amplifiable Probe Hybridisation
MAQ = Multiplex Amplicon Quantification
MCA = Melting Curve Analysis, high-resolution (HRMA)
microscope = microscopic analysis (karyotype)
microsat = microsatellite genotyping
minigene = expression minigene construct
MIP = Molecular Inversion Probe amplification
MIPsm = single molecule Molecular Inversion Probe amplification
MLPA = Multiplex Ligation-dependent Probe Amplification
MLPA-ms = Multiplex Ligation-dependent Probe Amplification, methylation specific
MS = mass spectrometry
Northern = Northern blotting
NUC = nuclease digestion (RNAseT1, S1)
OM = optical mapping
PAGE = Poly-Acrylamide Gel-Electrophoresis
PCR = Polymerase Chain Reaction
PCRdd = PCR, digital droplet
PCRdig = PCR + restriction enzyme digestion
PCRh = PCR, haloplex
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRms = PCR, methylation sensitive
PCRq = PCR, quantitative (qPCR)
PCRrp = PCR, repeat-primed (RP-PCR)
PCRsqd = PCR, semi-quantitative duplex
PE = primer extension (APEX, SNaPshot)
PEms = primer extension, methylation-sensitive single-nucleotide
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
PTT = Protein Truncation Test
RFLP = Restriction Fragment Length Polymorphisms
RT-PCR = Reverse Transcription and PCR
RT-PCRq = Reverse Transcription and PCR, quantitative
SBE = Single Base Extension
SEQ = SEQuencing (Sanger)
SEQb = bisulfite SEQuencing
SEQp = pyroSequencing
SEQms = sequencing, methylation specific
SEQ-ON = next-generation sequencing - Oxford Nanopore
SEQ-NG = next-generation sequencing
SEQ-NG-RNA = next-generation sequencing RNA
SEQ-NG-H = next-generation sequencing - Helicos
SEQ-NG-I = next-generation sequencing - Illumina/Solexa
SEQ-NG-IT = next-generation sequencing - Ion Torrent
SEQ-NG-R = next-generation sequencing - Roche/454
SEQ-NG-S = next-generation sequencing - SOLiD
SEQ-PB = next-generation sequencing - Pacific Biosciences
SNPlex = SNPlex
Southern = Southern blotting
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = fluorescent SSCA (SSCP)
STR = Short Tandem Repeat
TaqMan = TaqMan assay
Western = Western blotting
- = not applicable
Tissue
: tissue type used for analysis
Remarks
: remarks regarding the screening like WGS (whole genome sequencing), WES (whole exome sequencing, gene panel (incl. a list of genes analysed), etc.
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
36 entries on 1 page. Showing entries 1 - 36.
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Legend
How to query
Screening ID
Individual ID
Template
Technique
Tissue
Remarks
Variants found
Owner
0000017847
00017866
DNA;RNA
RT-PCR;SEQ
lymphoblasts
-
1
Johan den Dunnen
0000017848
00017867
DNA
SEQ
-
-
1
Johan den Dunnen
0000034284
00034215
DNA;RNA
RT-PCR;SEQ
-
-
1
Johan den Dunnen
0000038940
00038645
RNA
RT-PCR;SEQ
-
-
1
Mirella Filocamo
0000038948
00038713
DNA
?
-
-
1
Mirella Filocamo
0000038949
00038714
RNA
Northern;RT-PCR;SEQ
fibroblasts
-
1
Mirella Filocamo
0000038950
00038715
DNA
?
-
-
1
Mirella Filocamo
0000038951
00038716
RNA
PCRdig;RT-PCR;SEQ
fibroblasts
-
1
Mirella Filocamo
0000038952
00038717
RNA
RT-PCR;SEQ
skin fibroblasts
-
1
Mirella Filocamo
0000038953
00038718
RNA
?
-
-
1
Mirella Filocamo
0000038960
00038725
DNA
?
-
-
2
Mirella Filocamo
0000038961
00038726
DNA;RNA;protein
ASO;FISH;PCR;RT-PCR;SEQ
fibroblasts
-
1
Mirella Filocamo
0000038962
00038727
DNA;RNA
PCR;RT-PCR;SEQ
fibroblasts
-
2
Mirella Filocamo
0000038963
00038728
DNA;RNA
PCR;RT-PCR;SEQ
-
-
1
Mirella Filocamo
0000038969
00038735
DNA;RNA
PCR;RT-PCR;SEQ
-
-
1
Johan den Dunnen
0000039020
00038785
RNA
RT-PCR;SEQ
-
-
1
Mirella Filocamo
0000039021
00038786
RNA
RT-PCR;SEQ
-
-
1
Mirella Filocamo
0000039022
00038787
RNA
RT-PCR;SEQ
-
-
1
Mirella Filocamo
0000039023
00038788
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039024
00038789
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039025
00038790
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039026
00038791
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039027
00038792
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039040
00038802
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039041
00038803
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039042
00038804
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039043
00038805
DNA
PCR;SEQ
-
-
1
Mirella Filocamo
0000039044
00038806
DNA;RNA
PCR;RT-PCR;SEQ
fibroblasts
-
1
Mirella Filocamo
0000039045
00038807
DNA;RNA
PCR;RT-PCR;SEQ
fibroblasts
-
1
Mirella Filocamo
0000039046
00038808
DNA;RNA
PCR;RT-PCR;SEQ
-
-
1
Mirella Filocamo
0000081007
00080895
DNA
SEQ;SEQ-NG
-
-
1
Daniel Trujillano
0000081032
00080920
DNA
SEQ;SEQ-NG
-
-
1
Daniel Trujillano
0000174626
00173735
DNA
SEQ
blood
-
2
Martina Skopkova
0000376013
00374819
DNA
SEQ-NG
-
TruSight One panel
1
Johan den Dunnen
0000376014
00374820
DNA
SEQ-NG
-
TruSight One panel
1
Johan den Dunnen
0000378263
00377058
DNA
PCR
boold
wes
1
Shuyuan Yan
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