Global Variome shared LOVD
SLC6A8 (solute carrier family 6 (neurotransmitter ...))
LOVD v.3.0 Build 27 [
Current LOVD status
]
Register as submitter
|
Log in
Curators:
Gajja Salomons
and
Eric Wever
View all genes
View SLC6A8 gene homepage
View graphs about the SLC6A8 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene SLC6A8
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene SLC6A8
View all variants in gene SLC6A8
Full data view for gene SLC6A8
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene SLC6A8
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene SLC6A8
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene SLC6A8
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
All screenings for gene SLC6A8
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA (genomic DNA), RNA (cDNA) or protein
All options:
DNA
RNA = RNA (cDNA)
protein
? = unknown
Technique
: technique(s) used to identify the sequence variant.
All options:
? = unknown
ARMS = amplification refractory mutation system
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
ASO = allele-specific oligo hybridisation
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
COBRA = Combined Bisulfite Restriction Analysis
CSCE = Conformation Sensitive Capillary Electrophoresis
CSGE = Conformation Sensitive Gel Electrophoresis
ddF = dideoxy Fingerprinting
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
DSCA = Double-Strand DNA Conformation Analysis
DSDI = Detection Small Deletions and Insertions
EMC = Enzymatic Mismatch Cleavage
expr = expression analysis
FISH = Fluorescent In-Situ Hybridisation
FISHf = fiberFISH
HD = HeteroDuplex analysis
HPLC = High-Performance Liquid Chromatography
IEF = IsoElectric Focussing
IHC = Immuno-Histo-Chemistry
Invader = Invader assay
MAPH = Multiplex Amplifiable Probe Hybridisation
MAQ = Multiplex Amplicon Quantification
MCA = Melting Curve Analysis, high-resolution (HRMA)
microscope = microscopic analysis (karyotype)
microsat = microsatellite genotyping
minigene = expression minigene construct
MIP = Molecular Inversion Probe amplification
MIPsm = singele molecule Molecular Inversion Probe amplification
MLPA = Multiplex Ligation-dependent Probe Amplification
MLPA-ms = Multiplex Ligation-dependent Probe Amplification, methylation specific
MS = mass spectrometry
Northern = Northern blotting
NUC = nuclease digestion (RNAseT1, S1)
OM = optical mapping
PAGE = Poly-Acrylamide Gel-Electrophoresis
PCR = Polymerase Chain Reaction
PCRdd = PCR, digital droplet
PCRdig = PCR + restriction enzyme digestion
PCRh = PCR, haloplex
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRms = PCR, methylation sensitive
PCRq = PCR, quantitative (qPCR)
PCRrp = PCR, repeat-primed (RP-PCR)
PCRsqd = PCR, semi-quantitative duplex
PE = primer extension (APEX, SNaPshot)
PEms = primer extension, methylation-sensitive single-nucleotide
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
PTT = Protein Truncation Test
RFLP = Restriction Fragment Length Polymorphisms
RT-PCR = Reverse Transcription and PCR
RT-PCRq = Reverse Transcription and PCR, quantitative
SBE = Single Base Extension
SEQ = SEQuencing (Sanger)
SEQb = bisulfite SEQuencing
SEQp = pyroSequencing
SEQms = sequencing, methylation specific
SEQ-ON = next-generation sequencing - Oxford Nanopore
SEQ-NG = next-generation sequencing
SEQ-NG-H = next-generation sequencing - Helicos
SEQ-NG-I = next-generation sequencing - Illumina/Solexa
SEQ-NG-IT = next-generation sequencing - Ion Torrent
SEQ-NG-R = next-generation sequencing - Roche/454
SEQ-NG-S = next-generation sequencing - SOLiD
SEQ-PB = next-generation sequencing - Pacific Biosciences
SNPlex = SNPlex
Southern = Southern blotting
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = fluorescent SSCA (SSCP)
STR = Short Tandem Repeat
TaqMan = TaqMan assay
Western = Western blotting
- = not applicable
Tissue
: tissue type used for analysis
Remarks
: remarks regarding the screening like WGS (whole genome sequencing), WES (whole exome sequencing, gene panel (incl. a list of genes analysed), etc.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
326 entries on 4 pages. Showing entries 1 - 100.
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
« First
Prev
1
2
3
4
Next
Last »
Screening ID
Individual ID
Template
Technique
Tissue
Remarks
Variants found
Owner
0000037207
00037137
DNA
SEQ
-
-
1
Andreas Laner
0000037208
00037138
DNA
SEQ
-
-
1
Andreas Laner
0000037209
00037139
DNA
SEQ
-
-
1
Andreas Laner
0000037210
00037140
DNA
SEQ
-
-
1
Andreas Laner
0000037211
00037141
DNA
SEQ
-
-
1
Andreas Laner
0000037212
00037142
DNA
SEQ
-
-
1
Andreas Laner
0000037213
00037143
DNA
SEQ
-
-
1
Andreas Laner
0000037214
00037144
DNA
SEQ
-
-
1
Andreas Laner
0000037215
00037145
DNA
SEQ
-
-
1
Andreas Laner
0000037216
00037146
DNA
SEQ
-
-
1
Andreas Laner
0000037217
00037147
DNA
SEQ
-
-
1
Andreas Laner
0000037218
00037148
DNA
SEQ
-
-
1
Andreas Laner
0000165507
00164643
DNA
SEQ;SEQ-NG
-
-
1
Johan den Dunnen
0000184080
00183122
DNA
SEQ;SEQ-NG
-
WES-X chromosome
1
Johan den Dunnen
0000184081
00183123
DNA
SEQ;SEQ-NG
-
WES-X chromosome
1
Johan den Dunnen
0000184082
00183124
DNA
SEQ;SEQ-NG
-
WES-X chromosome
1
Johan den Dunnen
0000184083
00183125
DNA
SEQ;SEQ-NG
-
WES-X chromosome
1
Johan den Dunnen
0000186750
00185783
DNA
SEQ
-
-
1
Gajja Salomons
0000186751
00185784
DNA
SEQ
-
-
1
Gajja Salomons
0000186752
00185785
DNA
SEQ
-
-
1
Gajja Salomons
0000186753
00185786
DNA
SEQ
-
-
1
Gajja Salomons
0000186754
00185787
DNA
SEQ
-
-
1
Gajja Salomons
0000186755
00185788
DNA
SEQ
-
-
1
Gajja Salomons
0000186756
00185789
DNA
SEQ
-
-
1
Gajja Salomons
0000186757
00185790
DNA
SEQ
-
-
1
Gajja Salomons
0000186758
00185791
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186759
00185792
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186760
00185793
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186761
00185794
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186762
00185795
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186763
00185796
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186764
00185797
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186765
00185798
DNA
SEQ
-
-
1
Gajja Salomons
0000186766
00185799
DNA
SEQ
-
-
1
Gajja Salomons
0000186767
00185800
DNA
SEQ
-
-
1
Gajja Salomons
0000186768
00185801
DNA
SEQ
-
-
1
Gajja Salomons
0000186769
00185802
DNA
SEQ
-
-
1
Gajja Salomons
0000186770
00185803
DNA
SEQ
-
-
1
Gajja Salomons
0000186772
00185805
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186773
00185806
DNA
SEQ
-
-
1
Gajja Salomons
0000186774
00185807
DNA
SEQ
-
-
1
Gajja Salomons
0000186775
00185808
DNA
SEQ
-
-
1
Gajja Salomons
0000186785
00185818
DNA
SEQ
-
-
1
Gajja Salomons
0000186786
00185819
DNA
SEQ
-
-
1
Gajja Salomons
0000186787
00185820
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186788
00185821
DNA
SEQ
-
-
1
Gajja Salomons
0000186789
00185822
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186790
00185823
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186791
00185824
DNA
SEQ
-
-
1
Gajja Salomons
0000186792
00185825
DNA
SEQ
-
-
1
Gajja Salomons
0000186793
00185826
DNA
SEQ
-
-
1
Gajja Salomons
0000186794
00185827
DNA
SEQ
-
-
1
Gajja Salomons
0000186795
00185828
DNA
SEQ
-
-
1
Gajja Salomons
0000186796
00185829
DNA
SEQ
-
-
1
Gajja Salomons
0000186797
00185830
DNA
SEQ
-
-
1
Gajja Salomons
0000186798
00185831
DNA
SEQ
-
-
1
Gajja Salomons
0000186799
00185832
DNA
SEQ
-
-
1
Gajja Salomons
0000186800
00185833
DNA
SEQ
-
-
1
Gajja Salomons
0000186801
00185834
DNA
SEQ
-
-
1
Gajja Salomons
0000186802
00185835
DNA
SEQ
-
-
1
Gajja Salomons
0000186803
00185836
DNA
SEQ
-
-
1
Gajja Salomons
0000186804
00185837
DNA
SEQ
-
-
1
Gajja Salomons
0000186805
00185838
DNA
SEQ
-
-
1
Gajja Salomons
0000186806
00185839
DNA
SEQ
-
-
1
Gajja Salomons
0000186807
00185840
DNA
SEQ
-
-
1
Gajja Salomons
0000186808
00185841
DNA
SEQ
-
-
1
Gajja Salomons
0000186809
00185842
DNA
SEQ
-
-
1
Gajja Salomons
0000186810
00185843
DNA
SEQ
-
-
1
Gajja Salomons
0000186811
00185844
DNA
SEQ
-
-
1
Gajja Salomons
0000186812
00185845
DNA
SEQ
-
-
1
Gajja Salomons
0000186813
00185846
DNA
SEQ
-
-
1
Gajja Salomons
0000186814
00185847
DNA
SEQ
-
-
1
Gajja Salomons
0000186815
00185848
DNA
SEQ
-
-
1
Gajja Salomons
0000186816
00185849
DNA
SEQ
-
-
1
Gajja Salomons
0000186817
00185850
DNA
SEQ
-
-
1
Gajja Salomons
0000186818
00185851
DNA
SEQ
-
-
1
Gajja Salomons
0000186819
00185852
DNA
SEQ
-
-
1
Gajja Salomons
0000186820
00185853
DNA
SEQ
-
-
1
Gajja Salomons
0000186821
00185854
DNA
SEQ
-
-
1
Gajja Salomons
0000186822
00185855
DNA
SEQ
-
-
1
Gajja Salomons
0000186823
00185856
DNA
SEQ
-
-
1
Gajja Salomons
0000186824
00185857
DNA
SEQ
-
-
1
Gajja Salomons
0000186825
00185858
DNA
SEQ
-
-
1
Gajja Salomons
0000186826
00185859
DNA
SEQ
-
-
1
Gajja Salomons
0000186827
00185860
DNA
SEQ
-
-
1
Gajja Salomons
0000186828
00185861
DNA
SEQ
-
-
1
Gajja Salomons
0000186829
00185862
DNA
SEQ
-
-
1
Gajja Salomons
0000186830
00185863
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186831
00185864
DNA;RNA
SEQ
-
-
1
Gajja Salomons
0000186832
00185865
DNA
SEQ
-
-
1
Gajja Salomons
0000186833
00185866
DNA
SEQ
-
-
1
Gajja Salomons
0000186834
00185867
DNA
SEQ
-
-
1
Gajja Salomons
0000186835
00185868
DNA
SEQ
-
-
1
Gajja Salomons
0000186836
00185869
DNA
SEQ
-
-
1
Gajja Salomons
0000186837
00185870
DNA
SEQ
-
-
1
Gajja Salomons
0000186838
00185871
DNA
SEQ
-
-
1
Gajja Salomons
0000186839
00185872
DNA
SEQ
-
-
1
Gajja Salomons
0000186840
00185873
DNA
SEQ
-
-
1
Gajja Salomons
0000186841
00185874
DNA
SEQ
-
-
1
Gajja Salomons
0000186842
00185875
DNA
SEQ
-
-
1
Gajja Salomons
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
« First
Prev
1
2
3
4
Next
Last »
Powered by
LOVD v.3.0
Build 27
LOVD software ©2004-2022
Leiden University Medical Center