Global Variome shared LOVD
COL3A1 (collagen type III alpha 1 chain)
LOVD v.3.0 Build 30b [
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Curator:
Raymond Dalgleish
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Ehlers Danlos Syndrome Variant Database
ADAMTS2 (ADAM metallopeptidase with thrombospondin type 1 motif 2)
AEBP1 (AE binding protein 1)
B3GALT6 (beta-1,3-galactosyltransferase 6)
B4GALT7 (beta-1,4-galactosyltransferase 7)
C1R (complement component 1, r subcomponent)
C1S (complement component 1, s subcomponent)
CHST14 (carbohydrate sulfotransferase 14)
COL12A1 (collagen type XII alpha 1 chain)
COL1A1 (collagen type I alpha 1 chain)
COL1A2 (collagen type I alpha 2 chain)
COL3A1 (collagen type III alpha 1 chain)
COL5A1 (collagen type V alpha 1 chain)
COL5A2 (collagen type V alpha 2 chain)
DSE (dermatan sulfate epimerase)
FKBP14 (FKBP prolyl isomerase 14)
PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1)
PRDM5 (PR domain containing 5)
SLC39A13 (solute carrier family 39 (zinc transporter), member 13)
TNXB (tenascin XB)
ZNF469 (zinc finger protein 469)
The variants shown are described using the NM_000090.3 transcript reference sequence.
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Exon
: number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = from intron 2 to intron 7, 8i_9 = intron 8/exon 9 boundary, _1 = 5' to exon 1, 18_ = 3' of exon 18, _1_18_ = encompassing the entire 18-exon gene
DNA change (cDNA)
: description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup. For deletions/duplications extending beyond the reference transcript resp. {0}/{2} is used to replace del/dup. Extent of the deletion/duplication should be specified using the genomic description (g.). "-" indicates the variant described on genomic level does not affect the coding DNA reference sequence.
RNA change
: description of variant at RNA level (following HGVS recommendations).
r.123c>u
r.? = unknown
r.(?) = RNA not analysed but probably transcribed copy of DNA variant
r.spl? = RNA not analysed but variant probably affects splicing
r.(spl?) = RNA not analysed but variant may affect splicing
r.0? = change expected to abolish transcription
Protein
: description of variant at protein level (following HGVS recommendations).
p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
p.Arg345Pro = change derived from RNA analysis
p.? = unknown effect
p.0? = probably no protein produced
Predicted
: predicted consequence of variant (RNA/protein level)
All options:
missense
nonsense
frameshift
no-stop
silent
splicing affected
splicing affected, exon skipped
splicing affected?
deletion
deletion, small
deletion, large
deletion, exon
deletion, multi exon
duplication
duplication, small
duplication, large
insertion
insertion, small
insertion, large
delins = insertion/deletion
conversion
other/complex
Type/DNA
: type of variant at DNA level. NOTE: can be derived automatically from the variant description (for all levels)
All options:
substitution
deletion
deletion, small
deletion, large
duplication
duplication, small
duplication, large
insertion
insertion, small
insertion, large
delins = insertion/deletion
inversion
conversion
transposition
translocation
other/complex
Legacy protein change
: description of variant at protein level using a traditional (legacy) numbering system.
Allele
: On which allele is the variant located? Does not necessarily imply inheritance! 'Paternal' (confirmed or inferred), 'Maternal' (confirmed or inferred), 'Parent #1' or #2 for compound heterozygosity without having screened the parents, 'Unknown' for heterozygosity without having screened the parents, 'Both' for homozygozity.
Classification method
: The method used for the clinical classification of this variant.
All options:
ACMG
ACGS
EAHAD-CFDB
ENIGMA
IARC
InSiGHT
kConFab
other
Clinical classification
: Clinical classification of variant, preferably based on standardised criteria (e.g. ACMG), directed on the clinical consequences as published/submitted, indicated using an enriched system including inheritance: e.g. pathogenic, pathogenic (dominant), pathogenic (recessive), pathogenic (!), pathogenic (maternal), pathogenic (paternal). Standard inheritance is covered by dominant/recessive, imprinting by maternal/paternal. A '!' warns for exceptional circumstances to be explained in the 'Remarks' field (low penetrance, variants pathogenic in heterozygous state only, hypomorphic/hypermorphic variants, protective variants, etc.). Non-disease consequences (e.g. drug metabolism (pharmacogenetics), risk factor, blood group, tasting bitter) are indicated using additions to the benign classification; benign (dominant), benign (recessive), benign (!), etc. The value 'association' is used for variants associated with a phenotype and 'NA' for variants from in vitro/in silico records. NOTE: classification may differ from the opinion of the curator as given in a variant SUMMARY-record or the 'Functional effect concluded'). NOTE: pathogenic/likely pathogenic should go together with "variant (probably) affects function" In ClassFunctional.
All options:
pathogenic
pathogenic (dominant)
pathogenic (recessive)
pathogenic (!)
pathogenic (maternal)
pathogenic (paternal)
likely pathogenic
likely pathogenic (dominant)
likely pathogenic (recessive)
likely pathogenic (!)
likely pathogenic (maternal)
likely pathogenic (paternal)
VUS
VUS (!)
likely benign
likely benign (dominant)
likely benign (recessive)
likely benign (!)
likely benign (maternal)
likely benign (paternal)
benign
benign (dominant)
benign (recessive)
benign (!)
benign (maternal)
benign (paternal)
conflicting
association
NA
DNA change (genomic) (hg19)
: HGVS description of variant at DNA level, based on the genomic (chromosomal) DNA reference sequence; e.g. g.12345678C>T, g.12345679del, g.12345678_12345890dup
DNA change (hg38)
: HGVS description of variant at DNA level, based on the hg38 genomic (chromosomal) eference sequence; e.g. g.12345678C>T, g.12345679del, g.12345678_12345890dup
Published as
: listed only when different from "DNA change"; variant as reported originally (e.g. 521delT). Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G)
ISCN
: description of the variant according to ISCN nomenclature
DB-ID
: database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro
Variant remarks
: remarks regarding variant described, e.g. germline mosaicism in mother, 345 kb deletion, muscle RNA analysed, not in 200 control chromosomes tested, on founder haplotype, etc.
Reference
: publication describing the variant submitted, incl. links to OMIM, PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
ClinVar ID
: ID of variant in ClinVar database
dbSNP ID
: the dbSNP ID
Origin
: Origin of variant/record: Germline = in all cells, De novo = in all cells, but not in either parent, Germline/De novo (untested) = in all cells, parents not tested (use only when De novo is likely, e.g. isolated/sporadic cases with dominant disease), Somatic = present in a subset of cells, but not in either parent, Uniparental disomy = from parental disomy (maternal or paternal), CLASSIFICATION record = submitter only sharing variant classification (note another report may share Individual data), SUMMARY record = master summary record from curator (may link to another database), In vitro (cloned) = data resulting from in vitro functional assays, animal model = data from animal model, Artefact = false positive variant call, DUPLICATE record = variant already described on another chromosome (e.g. unbalanced translocation, duplicating transposition, 2nd fusion transcript, etc.)
All options:
Germline
De novo
Germline/De novo (untested)
Somatic
Uniparental disomy
Uniparental disomy, maternal allele
Uniparental disomy, paternal allele
CLASSIFICATION record
SUMMARY record
In vitro (cloned)
In silico
animal model
Artefact
DUPLICATE record
Unknown
Not applicable
Segregation
: Indicates whether the variant segregates with the phenotype (yes), does not segregate with the phenotype (no) or segregation is unknown (?)
All options:
? = unknown
yes = segregates with phenotype
no = does not segregate with phenotype
- = not applicable
Frequency
: frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested)
Re-site
: restriction enzyme recognition site created (+) or destroyed (-); e.g. BglII+;BamHI-
VIP
: variant VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Methylation
: result of methylation test; GOM (gain of methylation), LOM (loss of methylation), 30% (30% methylated). NOTE: when several tests were done mention the method as well (e.g. MS-PCR 75%)
Template
: Template(s) used to detect the sequence variant; DNA (genomic DNA), RNA (cDNA) or protein
All options:
DNA
RNA = RNA (cDNA)
protein
? = unknown
Technique
: technique(s) used to identify the sequence variant.
All options:
? = unknown
ARMS = amplification refractory mutation system
arrayCGH = array for Comparative Genomic Hybridisation
arrayMET = array for methylation analysis
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
ASO = allele-specific oligo hybridisation
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
COBRA = Combined Bisulfite Restriction Analysis
CSCE = Conformation Sensitive Capillary Electrophoresis
CSGE = Conformation Sensitive Gel Electrophoresis
ddF = dideoxy Fingerprinting
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
DSCA = Double-Strand DNA Conformation Analysis
DSDI = Detection Small Deletions and Insertions
EMC = Enzymatic Mismatch Cleavage
expr = expression analysis
FISH = Fluorescent In-Situ Hybridisation
FISHf = fiberFISH
HD = HeteroDuplex analysis
HPLC = High-Performance Liquid Chromatography
IEF = IsoElectric Focussing
IHC = Immuno-Histo-Chemistry
Invader = Invader assay
MAPH = Multiplex Amplifiable Probe Hybridisation
MAQ = Multiplex Amplicon Quantification
MCA = Melting Curve Analysis, high-resolution (HRMA)
microscope = microscopic analysis (karyotype)
microsat = microsatellite genotyping
minigene = expression minigene construct
MIP = Molecular Inversion Probe amplification
MIPsm = single molecule Molecular Inversion Probe amplification
MLPA = Multiplex Ligation-dependent Probe Amplification
MLPA-ms = Multiplex Ligation-dependent Probe Amplification, methylation specific
MS = mass spectrometry
Northern = Northern blotting
NUC = nuclease digestion (RNAseT1, S1)
OM = optical mapping
PAGE = Poly-Acrylamide Gel-Electrophoresis
PCR = Polymerase Chain Reaction
PCRdd = PCR, digital droplet
PCRdig = PCR + restriction enzyme digestion
PCRh = PCR, haloplex
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRms = PCR, methylation sensitive
PCRq = PCR, quantitative (qPCR)
PCRrp = PCR, repeat-primed (RP-PCR)
PCRsqd = PCR, semi-quantitative duplex
PE = primer extension (APEX, SNaPshot)
PEms = primer extension, methylation-sensitive single-nucleotide
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
PTT = Protein Truncation Test
RFLP = Restriction Fragment Length Polymorphisms
RT-PCR = Reverse Transcription and PCR
RT-PCRq = Reverse Transcription and PCR, quantitative
SBE = Single Base Extension
SEQ = SEQuencing (Sanger)
SEQb = bisulfite SEQuencing
SEQp = pyroSequencing
SEQms = sequencing, methylation specific
SEQ-ON = next-generation sequencing - Oxford Nanopore
SEQ-NG = next-generation sequencing
SEQ-NG-RNA = next-generation sequencing RNA
SEQ-NG-H = next-generation sequencing - Helicos
SEQ-NG-I = next-generation sequencing - Illumina/Solexa
SEQ-NG-IT = next-generation sequencing - Ion Torrent
SEQ-NG-R = next-generation sequencing - Roche/454
SEQ-NG-S = next-generation sequencing - SOLiD
SEQ-PB = next-generation sequencing - Pacific Biosciences
SNPlex = SNPlex
Southern = Southern blotting
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = fluorescent SSCA (SSCP)
STR = Short Tandem Repeat
TaqMan = TaqMan assay
Western = Western blotting
- = not applicable
Tissue
: tissue type used for analysis
Remarks
: remarks regarding the screening like WGS (whole genome sequencing), WES (whole exome sequencing, gene panel (incl. a list of genes analysed), etc.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
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Numeric
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all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
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all entries lower than, or equal to, 23
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all entries containing 'South Asian', but not containing 'South East Asian'
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Effect
Exon
DNA change (cDNA)
RNA change
Protein
Predicted
Type/DNA
Legacy protein change
Allele
Classification method
Clinical classification
DNA change (genomic) (hg19)
DNA change (hg38)
Published as
ISCN
DB-ID
Variant remarks
Reference
ClinVar ID
dbSNP ID
Origin
Segregation
Frequency
Re-site
VIP
Methylation
Template
Technique
Tissue
Remarks
Disease
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Panel size
Owner
+/.
_1_51_
c.-107_*972{0}
r.0
p.0
-
-
-
Unknown
-
pathogenic (dominant)
g.(188405810_188498336)_(200267551_200275296)del
-
2q deletion
-
COL3A1_000963
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
arrayCGH
-
blood
EDSVASC
86
-
Proband
F
-
United Kingdom (Great Britain)
-
-
-
-
-
1
Duncan Baker
+/.
_1_51_
c.-107_*972{0}
r.0
p.0
-
-
-
Unknown
-
pathogenic (dominant)
g.(g.(?_186534129)_(202840810_?)del
-
2q deletion
-
COL3A1_000963
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
arrayCGH
-
blood
EDSVASC
96
-
Proband
F
-
United Kingdom (Great Britain)
-
-
-
-
-
1
Duncan Baker
+/.
_1_51_
c.-107_*972{0}
r.0
p.0
-
-
-
Unknown
-
pathogenic (dominant)
g.(?_186408968)_(201568314_?)del
-
2q deletion
-
COL3A1_000963
-
-
-
-
De novo
-
-
-
-
-
DNA
arrayCGH
-
blood
EDSVASC
99
-
proband
F
-
United Kingdom (Great Britain)
-
-
-
-
-
1
Duncan Baker
+/.
_1_51_
c.-107_*972{0}
r.0
p.0
-
-
-
Unknown
-
pathogenic (dominant)
g.(185139669_185234253)_(214491747_214548932)del
-
2q deletion
-
COL3A1_000963
-
-
-
-
De novo
-
-
-
-
-
DNA
arrayCGH
-
amniotic fluid
EDSVASC
137
-
proband
F
-
United Kingdom (Great Britain)
-
-
-
-
-
1
Duncan Baker
+/+
1-52
c.1-?_c.4401+?del
r.?
-
deletion, multi exon
deletion
-
Unknown
-
pathogenic
g.(?_189839099)_(189877472_?)del
-
-
-
COL3A1_000620
-
PubMed: Frank et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Frank et al., 2015
-
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
?/.
-
c.3G>A
r.(?)
p.(Met1?)
-
-
-
Unknown
-
VUS
g.189839218G>A
g.188974492G>A
-
-
COL3A1_000870
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
1
c.30G>A
r.?
p.(Trp10*)
nonsense
substitution
-
Maternal (confirmed)
-
pathogenic
g.189839245G>A
-
-
-
COL3A1_000373
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
-?/.
-
c.80-226G>C
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189849260G>C
-
COL3A1(NM_000090.4):c.80-226G>C
-
COL3A1_001024
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.80-59C>T
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189849427C>T
-
COL3A1(NM_000090.4):c.80-59C>T
-
COL3A1_000809
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.80-22C>T
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189849464C>T
g.188984738C>T
COL3A1(NM_000090.3):c.80-22C>T
-
COL3A1_000817
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.80-16C>T
r.(=)
p.(=)
-
-
-
Unknown
-
benign
g.189849470C>T
g.188984744C>T
COL3A1(NM_000090.3):c.80-16C>T, COL3A1(NM_000090.4):c.80-16C>T
-
COL3A1_000818
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.80-16C>T
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189849470C>T
-
COL3A1(NM_000090.3):c.80-16C>T, COL3A1(NM_000090.4):c.80-16C>T
-
COL3A1_000818
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.87A>C
r.(?)
p.(Glu29Asp)
-
-
-
Unknown
-
likely benign
g.189849493A>C
g.188984767A>C
COL3A1(NM_000090.3):c.87A>C (p.E29D)
-
COL3A1_000819
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.111G>A
r.(?)
p.(Gln37=)
-
-
-
Unknown
-
likely benign
g.189849517G>A
g.188984791G>A
COL3A1(NM_000090.4):c.111G>A (p.Q37=)
-
COL3A1_000801
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
-
c.113C>A
r.(?)
p.(Ser38Tyr)
-
-
-
Unknown
-
VUS
g.189849519C>A
g.188984793C>A
COL3A1(NM_000090.3):c.113C>A (p.S38Y)
-
COL3A1_000802
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.114C>G
r.(?)
p.(Ser38=)
-
-
-
Unknown
-
likely benign
g.189849520C>G
g.188984794C>G
COL3A1(NM_000090.3):c.114C>G (p.S38=), COL3A1(NM_000090.4):c.114C>G (p.S38=)
-
COL3A1_000820
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.114C>G
r.(?)
p.(Ser38=)
-
-
-
Unknown
-
likely benign
g.189849520C>G
g.188984794C>G
COL3A1(NM_000090.3):c.114C>G (p.S38=), COL3A1(NM_000090.4):c.114C>G (p.S38=)
-
COL3A1_000820
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.114C>G
r.(?)
p.(Ser38=)
-
-
-
Unknown
-
likely benign
g.189849520C>G
g.188984794C>G
COL3A1(NM_000090.3):c.114C>G (p.S38=), COL3A1(NM_000090.4):c.114C>G (p.S38=)
-
COL3A1_000820
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.119C>A
r.(?)
p.(Ala40Glu)
-
-
-
Unknown
-
likely benign
g.189849525C>A
g.188984799C>A
-
-
COL3A1_000887
analysis 8380 WGS samples Japan
PubMed: Shido 2021
-
rs201380807
CLASSIFICATION record
-
0.0008
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/-
2
c.119C>T
r.?
p.(Ala40Val)
missense
substitution
-
Unknown
-
likely benign
g.189849525C>T
-
-
-
COL3A1_000746
-
PubMed: Sakai et al., 2011
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG, PCRm, PCR, arraySEQ
-
-
?
-
PubMed: Sakai et al., 2011
The technique used was the custom NGS Gene panel.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
?/.
-
c.121G>T
r.(?)
p.(Asp41Tyr)
-
-
-
Unknown
-
VUS
g.189849527G>T
-
COL3A1(NM_000090.4):c.121G>T (p.D41Y)
-
COL3A1_000988
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.123T>C
r.(?)
p.(Asp41=)
-
-
-
Unknown
-
likely benign
g.189849529T>C
-
COL3A1(NM_000090.3):c.123T>C (p.D41=)
-
COL3A1_000894
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/+?
2
c.130G>A
r.?
p.(Val44Ile)
missense
substitution
-
Unknown
-
likely pathogenic
g.189849536G>A
-
-
-
COL3A1_000587
-
PubMed: Frank et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Frank et al., 2015
-
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
-?/.
-
c.130G>A
r.(?)
p.(Val44Ile)
-
-
-
Unknown
-
likely benign
g.189849536G>A
-
COL3A1(NM_000090.4):c.130G>A (p.V44I)
-
COL3A1_000587
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
2
c.145C>G
r.?
p.(Pro49Ala)
missense
substitution
-
Both (homozygous)
-
pathogenic
g.189849551C>G
-
-
-
COL3A1_000646
-
PubMed: Vandervore et al., 2017
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ, SEQ-NG
-
-
?
Patient 1
PubMed: Vandervore et al., 2017
The proband's younger brother is also homozygous for this variant. The heterozygous parents are healthy.The technique used was whole exome sequencing.
-
-
-
Chechnyan
-
-
-
-
1
Raymond Dalgleish
+/+
2
c.145C>G
r.?
p.(Pro49Ala)
missense
substitution
-
Both (homozygous)
-
pathogenic
g.189849551C>G
-
-
-
COL3A1_000646
-
PubMed: Horn et al., 2017
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
?
Patient 2
PubMed: Horn et al., 2017
The patient's younger brother is also homozygous for the variant. Both parents were heterozygous carriers of the variant. These patients are distinct from those in
PubMed: Vandervore et al., 2017
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
-?/.
-
c.186C>T
r.(?)
p.(Cys62=)
-
-
-
Unknown
-
likely benign
g.189849592C>T
g.188984866C>T
COL3A1(NM_000090.3):c.186C>T (p.C62=), COL3A1(NM_000090.4):c.186C>T (p.C62=)
-
COL3A1_000821
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.186C>T
r.(?)
p.(Cys62=)
-
-
-
Unknown
-
likely benign
g.189849592C>T
g.188984866C>T
COL3A1(NM_000090.3):c.186C>T (p.C62=), COL3A1(NM_000090.4):c.186C>T (p.C62=)
-
COL3A1_000821
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+?/.
-
c.190G>T
r.(?)
p.(Asp64Tyr)
missense
substitution
-
Both (homozygous)
ACMG
VUS
g.189849596G>T
g.188984870G>T
-
-
COL3A1_000962
-
-
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG-I
-
-
epilepsy
-
-
-
-
yes
Pakistan
-
-
-
-
-
1
Sadaf Naz
+?/+?
2
c.194_195dup
r.?
p.(Ile66*)
frameshift
duplication
-
Unknown
-
likely pathogenic
g.189849600_189849601dup
-
-
-
COL3A1_000693
-
PubMed: Legrand et al., 2019
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Legrand et al., 2019
-
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
-?/-?
2
c.198A>G
r.?
p.(Ile66Met)
missense
substitution
-
Unknown
-
benign
g.189849604A>G
-
-
-
COL3A1_000631
-
-
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG
-
-
EDS, EDSHMB
-
-
Hypermobility EDS / BJHS: EDS III Benign connective tissue phenotype with coronary artery dissections.
-
-
-
white
-
-
-
-
1
Ruwan Weerakkody
+/+
2
c.202_207del
r.?
p.(Asp68_Asp69del)
deletion
deletion
-
Unknown
-
pathogenic
g.189849608_189849613del
-
-
-
COL3A1_000340
-
PubMed: Frank et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Frank et al., 2015
This patient was subsequently described in
PubMed: Legrand et al., 2019
.
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
./.
-
c.217G>C
r.(?)
p.(Asp73His)
-
-
-
Unknown
-
likely pathogenic
g.189849623G>C
g.188984897G>C
NM_000090.3(COL3A1):c.217G>C p.(Asp73His)
-
COL3A1_000816
variant could not be associated with disease phenotype
PubMed: Vogelaar 2017
,
Journal: Vogelaar 2017
-
-
Germline
-
-
-
-
-
DNA
SEQ-NG
-
-
cancer, gastric
Vogelaar-529A
PubMed: Vogelaar 2017
,
Journal: Vogelaar 2017
54 patients from 53 families with genetically unexplained diffuse-type and intestinal-type gastric cancer
-
-
-
-
-
-
-
-
1
Marjolijn JL Ligtenberg
?/.
-
c.217G>C
r.(?)
p.(Asp73His)
-
-
-
Unknown
-
VUS
g.189849623G>C
g.188984897G>C
COL3A1(NM_000090.3):c.217G>C (p.D73H)
-
COL3A1_000816
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.225C>A
r.(?)
p.(=)
-
-
-
Unknown
-
likely benign
g.189849631C>A
-
COL3A1(NM_000090.4):c.225C>A (p.P75=)
-
COL3A1_001062
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/.
-
c.318_325del
r.(?)
p.(Pro107ArgfsTer13)
-
-
-
Unknown
-
pathogenic
g.189849958_189849965del
g.188985232_188985239del
COL3A1(NM_000090.4):c.318_325delCCCCAAGG (p.P107Rfs*13)
-
COL3A1_000648
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
3
c.318_325del
r.?
p.(Pro107Argfs*13)
frameshift
deletion
-
Unknown
-
pathogenic
g.189849958_189849965del
-
-
-
COL3A1_000648
-
PubMed: Overwater et al., 2018
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG
-
-
EDS, EDSVASC
Pat9
PubMed: Overwater 2018
The technique used was the custom NGS Gene panel.
-
-
Netherlands
-
-
-
-
-
1
Alessandra Maugeri
-?/.
-
c.333+15T>C
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189849988T>C
-
COL3A1(NM_000090.4):c.333+15T>C
-
COL3A1_000895
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.334-97G>A
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189850294G>A
-
COL3A1(NM_000090.4):c.334-97G>A
-
COL3A1_001009
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
3i
c.334-11C>G
r.spl?
p.(?)
-
-
-
Unknown
-
VUS
g.189850380C>G
g.188985654C>G
-
-
COL3A1_000964
-
Leone 2023, submitted
-
-
Germline
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
?
P-0189
Leone 2023, submitted
-
-
-
Italy
-
-
-
-
-
1
Maria Pia Leone
?/.
-
c.370G>C
r.(?)
p.(Gly124Arg)
-
-
-
Unknown
-
VUS
g.189850427G>C
g.188985701G>C
COL3A1(NM_000090.4):c.370G>C (p.G124R)
-
COL3A1_000653
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/?
4_5
c.370G>C
r.?
p.(Gly124Arg)
missense
substitution
-
Unknown
-
VUS
g.189850427G>C
-
-
-
COL3A1_000653
-
-
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG
-
-
?
-
-
The technique used was the custom NGS Gene panel.
-
-
-
-
-
-
-
-
1
Alessandra Maugeri
?/.
-
c.370G>C
r.(?)
p.(Gly124Arg)
-
-
-
Parent #1
-
VUS
g.189850427G>C
g.188985701G>C
-
-
COL3A1_000653
-
PubMed: Overwater 2018
-
-
Germline
yes
1/128 cases FA
-
-
-
DNA
SEQ, SEQ-NG
-
gene panel
?
Pat69
PubMed: Overwater 2018
-
-
-
Netherlands
-
-
-
-
-
1
Johan den Dunnen
+/+
-
c.382C>T
r.(?)
p.(Gln128*)
nonsense
substitution
-
Unknown
-
pathogenic
g.189850439C>T
g.188985713C>T
-
-
COL3A1_000943
-
-
-
-
Germline
-
-
-
-
-
DNA
SEQ-NG
Blood
-
EDSVASC
42*
-
-
M
-
-
-
-
-
-
-
2
Duncan Baker
+/+
4_5
c.413del
r.?
p.(Pro138Leufs*27)
frameshift
deletion
-
Unknown
-
pathogenic
g.189850470del
-
-
-
COL3A1_000125
-
PubMed: Schwarze et al., 2001
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Schwarze et al., 2001
PubMed: Pepin et al., 2014
The patient was described by
PubMed: Schwarze et al., 2001
as patient P2. The patient was subsequently presented as Family 1 by
PubMed: Leistritz et al., 2011
.
-
-
-
-
-
-
-
-
1
Peter Byers
-?/.
-
c.447+13C>T
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189850517C>T
-
COL3A1(NM_000090.3):c.447+13C>T
-
COL3A1_000915
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.472T>A
r.(?)
p.(Tyr158Asn)
-
-
-
Unknown
-
likely benign
g.189851809T>A
-
-
-
COL3A1_000996
-
-
-
rs756125442
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
6
c.479dup
r.?
p.(Lys161Glnfs*45)
frameshift
duplication
-
Both (homozygous)
-
pathogenic
g.189851816dup
-
-
-
COL3A1_000078
-
PubMed: Plancke et al., 2009
-
rs397509377
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Plancke et al., 2009
The patient is homozygous for the variant and neither parent shows any symptoms of EDS. The variant is described as being in exon 5, but is in exon 6, using the accepted conventional exon numbering scheme. This patient was subsequently described as Patient 3 by
PubMed: Vandervore et al., 2017
.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/+
6
c.505C>T
r.?
p.(Leu169Phe)
missense
substitution
Leu2Phe
Unknown
-
pathogenic
g.189851842C>T
-
-
-
COL3A1_000004
-
Anderson et al., 1994 Matrix Biology 14, 392
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ
-
-
?
-
Anderson et al., 1994 Matrix Biology 14, 392
-
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
-?/.
-
c.505C>T
r.(?)
p.(Leu169Phe)
-
-
-
Unknown
-
likely benign
g.189851842C>T
-
COL3A1(NM_000090.3):c.505C>T (p.L169F)
-
COL3A1_000004
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
-
c.508G>C
r.(?)
p.(Ala170Pro)
-
-
-
Unknown
-
VUS
g.189851845G>C
-
COL3A1(NM_000090.3):c.508G>C (p.A170P)
-
COL3A1_000882
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
5
c.515A>C
r.(?)
p.(Tyr172Ser)
-
-
-
Paternal (inferred)
-
likely benign
g.189851852A>C
g.188987126A>C
-
-
COL3A1_000965
-
Leone 2023, submitted
-
-
Germline
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
EDS
P-0142
Leone 2023, submitted
-
-
-
Italy
-
-
-
-
-
1
Maria Pia Leone
+/+?
6i
c.528+5G>A
r.?
-
splicing affected?
substitution
-
Unknown
-
likely pathogenic
g.189851870G>A
-
-
-
COL3A1_000736
-
PubMed: Henneton et al, 2019
-
-
Unknown
-
-
-
-
-
DNA
MLPA, RT-PCR, SEQ
-
-
?
Patient 101
PubMed: Henneton et al, 2019
Patient is a 33 year old female. This patient was subsequently described in
PubMed: Frank et al., 2019
as patient 91.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/.
-
c.528+5G>A
r.spl?
p.?
-
-
-
Unknown
-
pathogenic (dominant)
g.189851870G>A
g.188987144G>A
-
-
COL3A1_000736
-
PubMed: Chuan 2022
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ, SEQ-NG
-
WES
epilepsy
Pat134
PubMed: Chuan 2022
-
F
-
China
-
-
-
-
-
1
Johan den Dunnen
-?/.
-
c.528+424T>C
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189852289T>C
-
COL3A1(NM_000090.4):c.528+424T>C
-
COL3A1_000878
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.529-124_529-114del
r.(=)
p.(=)
-
-
-
Unknown
-
likely benign
g.189852683_189852693del
g.188987957_188987967del
COL3A1(NM_000090.3):c.529-124_529-114delAGTTATCAAAA
-
COL3A1_000822
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
7
c.530G>A
r.?
p.(Gly177Asp)
missense
substitution
Gly10Asp
Unknown
-
pathogenic
g.189852808G>A
-
-
-
COL3A1_000588
-
PubMed: Frank et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Frank et al., 2015
This patient was subsequently described in
PubMed: Legrand et al., 2019
.
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
-/-
7
c.531C>A
r.?
p.(=)
silent
substitution
-
Unknown
-
likely benign
g.189852809C>A
-
-
-
COL3A1_000183
-
PubMed: Chan et al., 2008
-
rs41272797
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
?
-
PubMed: Chan et al., 2008
This is a non-pathogenic variant.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/+
7
c.536del
r.?
p.(Pro179Glnfs*43)
frameshift
deletion
Pro12Glnfs*43
Unknown
-
pathogenic
g.189852814del
-
-
-
COL3A1_000742
-
PubMed: Weerakkody et al., 2018
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG, PCRm
-
-
TAAD
-
PubMed: Weerakkody et al., 2018
The technique used was the custom exome panel.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/.
-
c.537_554del
r.(?)
p.(Pro181_Gly186del)
-
-
-
Unknown
-
pathogenic (dominant)
g.189852815_189852832del
g.188988089_188988106del
-
-
COL3A1_000966
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG
-
blood
EDSVASC
117*
-
relative
F
-
United Kingdom (Great Britain)
-
-
-
-
-
1
Duncan Baker
+/+
7
c.539G>A
r.?
p.(Gly180Asp)
missense
substitution
Gly13Asp
Unknown
-
pathogenic
g.189852817G>A
-
-
-
COL3A1_000250
-
PubMed: Naing et al., 2011
-
-
Unknown
-
-
-
-
-
DNA
SEQ, MCA
-
-
EDS, EDSVASC
-
PubMed: Naing et al., 2011
-
-
-
Japan
Japanese
-
-
-
-
1
Raymond Dalgleish
+/+
7
c.539G>A
r.?
p.(Gly180Asp)
missense
substitution
Gly13Asp
Unknown
-
pathogenic
g.189852817G>A
-
-
-
COL3A1_000250
-
PubMed: Frank et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Frank et al., 2015
This patient was subsequently described as Index Patient 219 (30F) in
PubMed: Henneton et al., 2019
. This patient was described as Patient 1 in
PubMed: Frank et al., 2019
and was also described in
PubMed: Legrand et al., 2019
.
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
+/+
7
c.539G>A
r.?
p.(Gly180Asp)
missense
substitution
Gly13Asp
Unknown
-
pathogenic
g.189852817G>A
-
-
-
COL3A1_000250
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/.
-
c.539G>A
r.(?)
p.(Gly180Asp)
-
-
-
Unknown
-
pathogenic (dominant)
g.189852817G>A
g.188988091G>A
-
-
COL3A1_000250
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG
-
blood
EDSVASC
157
-
proband
M
-
United Kingdom (Great Britain)
-
-
-
-
-
2
Duncan Baker
+/+
-
c.547G>A
r.(?)
p.(Gly183Ser)
missense
-
-
Parent #1
-
pathogenic
g.189852825G>A
g.188988099G>A
-
-
COL3A1_000006
1 heterozygous, no homozygous;
Clinindb (India)
PubMed: Narang 2020
,
Journal: Narang 2020
-
rs121912926
Germline
-
1/2780 individuals
-
-
-
DNA
arraySNP
-
Infinium Global Screening Array v1.0
?
-
PubMed: Narang 2020
,
Journal: Narang 2020
analysis 2794 individuals (India)
-
-
India
-
-
-
-
-
1
Mohammed Faruq
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
?/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
-
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
P002
-
-
-
-
-
white
-
-
-
-
1
Javier Garcia-Planells
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Mortani Barbosa et al., 2011
-
-
Unknown
-
-
-
-
-
?
?
-
-
EDS, EDSVASC
Patient 2
PubMed: Mortani Barbosa et al., 2011
The protein level variant description is incorrectly described as p.G16S.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Frank et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Frank et al., 2015
This patient was subsequently described in
PubMed: Legrand et al., 2019
.
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Kerwin et al., 2008
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Kerwin et al., 2008
PubMed: Pepin et al., 2014
This patient was identified as Subject 00-1123 by
PubMed: Kerwin et al., 2008
.
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
de novo
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Maternal (inferred)
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Paternal (inferred)
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
de novo
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
de novo
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
de novo
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
affected sib
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>A
r.?
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
-
pathogenic
g.189852825G>A
-
-
-
COL3A1_000006
-
-
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
-
This patient was subsequently described in
PubMed: Legrand et al., 2019
.
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
+/+
7
c.547G>A
r.(?)
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
ACMG
pathogenic
g.189852825G>A
g.188988099G>A
-
-
COL3A1_000006
-
PubMed: Yamaguchi et al., 2022
-
-
Germline
?
-
-
-
-
DNA
SEQ-NG
peripheral blood
-
EDSVASC
1
PubMed: Yamaguchi et al., 2022
-
F
?
-
-
-
-
-
-
1
Oumaima Nehaili
+/+
7
c.547G>A
r.(?)
p.(Gly183Ser)
missense
substitution
Gly16Ser
Unknown
ACMG
pathogenic
g.189852825G>A
g.188988099G>A
-
-
COL3A1_000006
-
PubMed: Yamaguchi et al., 2022
-
-
Germline
-
-
-
-
-
DNA
SEQ-NG
peripheral blood
-
EDSVASC
2
PubMed: Yamaguchi et al., 2022
-
F
?
-
-
-
-
-
-
1
Oumaima Nehaili
+/.
-
c.547G>A
r.(?)
p.(Gly183Ser)
-
-
-
Unknown
-
pathogenic (dominant)
g.189852825G>A
g.188988099G>A
-
-
COL3A1_000006
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG
-
blood
EDSVASC
76*
-
Proband
F
-
United Kingdom (Great Britain)
-
-
-
-
-
1
Duncan Baker
+/+
-
c.547G>A
r.(?)
p.(Gly183Ser)
missense
substitution
-
Unknown
-
likely pathogenic (dominant)
g.189852825G>A
-
-
-
COL3A1_000006
-
-
-
-
Not applicable
-
-
-
-
-
DNA
SEQ-NG-I
-
-
EDSVASC
-
-
-
-
-
-
-
-
-
-
-
1
Lucia Micale
+/+
7
c.547G>C
r.?
p.(Gly183Arg)
missense
substitution
Gly16Arg
Unknown
-
pathogenic
g.189852825G>C
-
-
-
COL3A1_000374
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.547G>T
r.?
p.(Gly183Cys)
missense
substitution
Gly16Cys
Unknown
-
pathogenic
g.189852825G>T
-
-
-
COL3A1_000005
-
PubMed: Smith et al., 1997
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Smith et al., 1997
PubMed: Pepin et al., 2014
This patient was identified as Sample 1 by
PubMed: Smith et al., 1997
and was subsequently described by
PubMed: Pepin et al., 2000
.
-
-
-
-
-
-
-
-
1
Peter Byers
+/.
-
c.548G>A
r.(?)
p.(Gly183Asp)
-
-
-
Unknown
-
pathogenic
g.189852826G>A
g.188988100G>A
COL3A1(NM_000090.4):c.548G>A (p.G183D)
-
COL3A1_000001
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
7
c.548G>A
r.?
p.(Gly183Asp)
missense
substitution
Gly16Asp
Unknown
-
pathogenic
g.189852826G>A
-
-
-
COL3A1_000001
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
RNA
RT-PCR, SEQ, SSCA
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2000
PubMed: Pepin et al., 2014
-
-
-
-
-
-
-
-
-
1
Peter Byers
+/+
7
c.548G>A
r.?
p.(Gly183Asp)
missense
substitution
Gly16Asp
Unknown
-
pathogenic
g.189852826G>A
-
-
-
COL3A1_000001
-
PubMed: Frank et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSVASC
-
PubMed: Frank et al., 2015
This patient was subsequently as Index Patient 111 (37F) in
PubMed: Henneton et al., 2019
. This patient was described as Patient 2 in
PubMed: Frank et al., 2019
and was subsequently described in
PubMed: Legrand et al., 2019
.
-
-
-
-
-
-
-
-
1
Xavier Jeunemaitre
+?/+
-
c.548G>A
r.?
p.(Gly183Asp)
missense
substitution
-
Unknown
-
pathogenic
g.189852826G>A
-
-
-
COL3A1_000001
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG
-
-
EDSVASC
-
-
-
-
-
-
-
-
-
-
-
1
Niamh Wilkinson
+/+
7
c.548G>C
r.?
p.(Gly183Ala)
missense
substitution
Gly16Ala
Unknown
-
pathogenic
g.189852826G>C
-
-
-
COL3A1_000297
-
PubMed: Morissette et al., 2014
-
-
Unknown
-
-
-
-
-
DNA
IHC, SEQ, Western
-
-
EDS, EDSVASC
-
PubMed: Morissette et al., 2014
Patient 17, Male, 51y, arterial event. His daughter, patient 18, AN_002818, female, 21y, arterial event, carries the same mutation
-
-
-
-
-
-
-
-
1
Zhi Xu
+/+
7
c.548G>C
r.?
p.(Gly183Ala)
missense
substitution
Gly16Ala
Paternal (confirmed)
-
pathogenic
g.189852826G>C
-
-
-
COL3A1_000297
-
PubMed: Pepin et al., 2014
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSVASC
-
PubMed: Pepin et al., 2014
mosaic parent
-
-
-
-
-
-
-
-
1
Peter Byers
+/.
-
c.548G>T
r.(?)
p.(Gly183Val)
-
-
-
Unknown
-
pathogenic
g.189852826G>T
g.188988100G>T
COL3A1(NM_000090.3):c.548G>T (p.G183V)
-
COL3A1_000823
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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