Full data view for gene COL5A1

Ehlers Danlos Syndrome Variant Database


Information The variants shown are described using the transcript reference sequence.

816 entries on 9 pages. Showing entries 1 - 100.
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Effect     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

Predicted     

Type/DNA     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

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Age at death     

VIP     

Data_av     

Treatment     

Panel size     

Owner     
?/. 11i_66_ c.(1494+1_1495-3373)_*2540{2} r.? p.? - - Unknown - VUS (!) g.(?_137639015)_(141025921_?)dup - dup ex12067, hg19 137639015-141025921dup - COL5A1_000599 3.4 Mb duplication encompassing exons 12-67 of COL5A1, probably preceeded by deletion ex2-11 PubMed: Kuroda 2018 - - De novo - - - - - DNA arrayCGH Peripheral blood - EDSCL1 1 PubMed: Kuroda et al., 2018 - M no Japan - - - - - 1 Nassim Louail
+/+ 63i_65i c.(5067+1_5068-1)_(5370+?)del r.? p.? deletion, multi exon deletion Unknown - pathogenic g.? - - - COL5A1_000195 - - - - Unknown - - - - - DNA MLPA, PCR, SEQ - - EDS, EDSCL1 - - For MLPA analyses the P331-B1 and P332-B1 probemixes from MRC Holland were used. The probemixes contain one probe for each exon of the COL5A1 gene with the exception of exons 12, 26, 33, 36, 39, 49, 54, 59 and 66. - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
+/+ 01-11 chr9.hg19:g.(137,440,166_137,442,686)_(137,633,699_137,638,368)dup r.? p.? other/complex duplication Paternal (confirmed) - pathogenic g.? - - - COL5A1_000164 - PubMed: Ritelli et al., 2013 - - Unknown - - - - - DNA MLPA, PCR, SEQ - - EDS, EDSCL1 - PubMed: Ritelli et al., 2013 Brother of affected individual AN_002536 and son of affected individual AN_002537. - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
?/. - c.28C>T r.(?) p.(Arg10Cys) - - Unknown - VUS g.137534061C>T - - - COL5A1_000526 - - - - Germline - - - - - DNA SEQ-NG-S - - ? - - - ? - - - - - - - 1 Andreas Laner
-?/. - c.36G>C r.(?) p.(=) - - Unknown - likely benign g.137534069G>C - COL5A1(NM_000093.5):c.36G>C (p.A12=) - COL5A1_000640 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. 01 c.61C>T r.(?) p.(Pro21Ser) missense substitution Unknown - benign g.137534094C>T g.134642248C>T COL5A1(NM_000093.4):c.61C>T (p.P21S) - COL5A1_000440 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/- 1 c.66G>A r.(?) p.(=) silent substitution Unknown - VUS g.137534099G>A - - - COL5A1_000069 - - - rs13288533 Unknown - - - - - ? ? - - ? - - - - - - - - - - - 1 Raymond Dalgleish
+/+ 1 c.74T>C r.(?) p.(Leu25Pro) missense substitution Unknown - pathogenic g.137534107T>C - - - COL5A1_000051 - PubMed: Symoens et al., 2009 - - Unknown - - - - - DNA, RNA PAGE, PCR, RT-PCR, SEQ - - EDS, EDSCL1 - PubMed: Symoens et al., 2009 - - - - white - - - - 1 Sofie Symoens
+/+ 1 c.74T>G r.(?) p.(Leu25Arg) missense substitution Unknown - pathogenic g.137534107T>G - - - COL5A1_000050 - PubMed: Symoens et al., 2009 - - Unknown - - - - - DNA, RNA PAGE, PCR, RT-PCR, SEQ - - EDS, EDSCL1 - PubMed: Symoens et al., 2009 - - - - white - - - - 1 Sofie Symoens
-?/. - c.82_84del r.(?) p.(Leu28del) - - Unknown - likely benign g.137534115_137534117del g.134642269_134642271del COL5A1(NM_000093.4):c.82_84delCTG (p.L28del), COL5A1(NM_000093.5):c.82_84delCTG (p.L28del) - COL5A1_000442 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.82_84del r.(?) p.(Leu28del) - - Unknown - benign g.137534115_137534117del - COL5A1(NM_000093.4):c.82_84delCTG (p.L28del), COL5A1(NM_000093.5):c.82_84delCTG (p.L28del) - COL5A1_000442 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.82_84dup r.(?) p.(Leu28dup) - - Unknown - likely benign g.137534115_137534117dup g.134642269_134642271dup COL5A1(NM_000093.5):c.82_84dupCTG (p.L28dup) - COL5A1_000340 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 1 c.87G>A r.(?) p.(Trp29*) nonsense substitution Unknown - pathogenic g.137534120G>A - - - COL5A1_000147 - PubMed: Ritelli et al., 2013 - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - PubMed: Ritelli et al., 2013 This is a sporadic case (de novo mutation verified). - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
-?/. - c.89C>T r.(?) p.(Ala30Val) - - Unknown - likely benign g.137534122C>T g.134642276C>T COL5A1(NM_000093.4):c.89C>T (p.A30V) - COL5A1_000341 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.109+3A>T r.spl? p.? splicing affected - Unknown - pathogenic g.137534145A>T - - - COL5A1_000488 - PubMed: Colman 2021, Journal: Colman 2021 - - Germline/De novo (untested) - - - - - DNA SEQ-NG-I - - EDSCL1 AN_006301 PubMed: Colman 2021, Journal: Colman 2021 - - - Belgium - - - - - 1 Marlies Colman
-?/. - c.109+208C>T r.(=) p.(=) - - Unknown - likely benign g.137534350C>T g.134642504C>T COL5A1(NM_000093.5):c.109+208C>T - COL5A1_000421 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.109+216C>G r.(=) p.(=) - - Unknown - likely benign g.137534358C>G - COL5A1(NM_000093.5):c.109+216C>G - COL5A1_000626 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. 1i_11i c.(?_109+9869)_(1495-4835_?)del r.? p.? - - Unknown - pathogenic g.(?_137544011)_(137637553_?)del - del ex2-11, hg19 137544011-137637553del - COL5A1_000598 - 94 kb deletion - - De novo - - - - - DNA arrayCGH Peripheral blood - EDSCL1 1 PubMed: Kuroda et al., 2018 - M no Japan - - - - - 1 Nassim Louail
+?/. 1i_65i_ c.(109+1_110-1)_(5370+1_?)del r.? p.0? deletion, multi exon deletion, large Paternal (confirmed) ACMG pathogenic (dominant) g.(137534143_137582757)_(137727051_?)del g.(134642297_134690911)_(134835205_?)del - - COL5A1_000544 germline mosaicism in father, deletion of COL5A1 exons 2-65 (exon 66 not tested), heterozygous - - - Germline - - - - - DNA MLPA Blood - EDSCL1 - PubMed: Strang-Karlsson et al., 2022 Child who inherited gross deletion from mosaic unaffected father F no Finland - - - - - 2 Sonja Strang-Karlsson
?/. 1i_65i_ c.(109+1_110-1)_(5370+1_?)del r.? p.0? deletion, multi exon deletion, large Unknown ACMG pathogenic g.(137534143_137582757)_(137727051_?)del g.(134642297_134690911)_(134835205_?)del - - COL5A1_000544 Multiexon deletion of exons 2-65 (66 not tested) - - - Unknown - - - - - DNA MLPA Blood, DNA from skin - Healthy/Control - PubMed: Strang-Karlsson et al., 2022 unaffected M no Finland - - - - - 1 Sonja Strang-Karlsson
+/. - c.116_117dup r.(?) p.(Ala40Glnfs*5) frameshift - Unknown - pathogenic g.137582764_137582763insCA - - - COL5A1_000489 - PubMed: Colman 2021, Journal: Colman 2021 - - Germline/De novo (untested) - - - - - DNA SEQ-NG-I - - EDSCL1 AN_006302 PubMed: Colman 2021, Journal: Colman 2021 - - - Belgium - - - - - 1 Marlies Colman
-?/. - c.126C>T r.(?) p.(Leu42=) - - Unknown - likely benign g.137582774C>T g.134690928C>T COL5A1(NM_000093.4):c.126C>T (p.L42=), COL5A1(NM_000093.5):c.126C>T (p.L42=) - COL5A1_000443 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.126C>T r.(?) p.(Leu42=) - - Unknown - likely benign g.137582774C>T g.134690928C>T COL5A1(NM_000093.4):c.126C>T (p.L42=), COL5A1(NM_000093.5):c.126C>T (p.L42=) - COL5A1_000443 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.126C>T r.(?) p.(Leu42=) - - Unknown - likely benign g.137582774C>T - COL5A1(NM_000093.4):c.126C>T (p.L42=), COL5A1(NM_000093.5):c.126C>T (p.L42=) - COL5A1_000443 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
./. - c.145C>T r.(?) p.(His49Tyr) - - Unknown - likely pathogenic g.137582793C>T g.134690947C>T NM_000093.4(COL5A1):c.145C>T p.(His49Tyr) - COL5A1_000439 variant could not be associated with disease phenotype PubMed: Vogelaar 2017, Journal: Vogelaar 2017 - - Germline - - - - - DNA SEQ-NG - - cancer, gastric Vogelaar-520A PubMed: Vogelaar 2017, Journal: Vogelaar 2017 54 patients from 53 families with genetically unexplained diffuse-type and intestinal-type gastric cancer - - - - - - - - 1 Marjolijn JL Ligtenberg
?/. - c.145C>T r.(?) p.(His49Tyr) - - Unknown - VUS g.137582793C>T g.134690947C>T COL5A1(NM_000093.4):c.145C>T (p.H49Y) - COL5A1_000439 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.145C>T r.(?) p.(His49Tyr) - - Unknown - VUS g.137582793C>T - COL5A1(NM_000093.4):c.145C>T (p.H49Y) - COL5A1_000439 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. 2 c.155C>G r.(?) p.(Pro52Arg) - - Unknown - VUS g.137582803C>G g.134690957C>G - - COL5A1_000556 - - - - Germline/De novo (untested) - - - - - DNA SEQ, SEQ-NG blood - ? - - - - - Italy - - - - - 1 Lucia Micale
+/+ 2 c.160G>T r.(?) p.(Gly54*) nonsense substitution Unknown - pathogenic g.137582808G>T - - - COL5A1_000106 - PubMed: Symoens et al., 2012 - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - PubMed: Symoens et al., 2012 - - - - - - - - - 1 Sofie Symoens
-?/. - c.187G>A r.(?) p.(Ala63Thr) - - Unknown - likely benign g.137582835G>A - COL5A1(NM_000093.4):c.187G>A (p.A63T) - COL5A1_000478 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.193C>T r.(?) p.(Arg65Trp) - - Unknown - likely benign g.137582841C>T g.134690995C>T COL5A1(NM_000093.4):c.193C>T (p.R65W), COL5A1(NM_000093.5):c.193C>T (p.R65W) - COL5A1_000203 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.193C>T r.(?) p.(Arg65Trp) - - Unknown - likely benign g.137582841C>T g.134690995C>T COL5A1(NM_000093.4):c.193C>T (p.R65W), COL5A1(NM_000093.5):c.193C>T (p.R65W) - COL5A1_000203 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.193C>T r.(?) p.(Arg65Trp) - - Unknown - VUS g.137582841C>T g.134690995C>T COL5A1(NM_000093.4):c.193C>T (p.R65W), COL5A1(NM_000093.5):c.193C>T (p.R65W) - COL5A1_000203 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+? 2 c.193C>T r.(?) p.(Arg65Trp) missense substitution Paternal (confirmed) - likely pathogenic g.137582841C>T - - - COL5A1_000203 - PubMed: Junkiert-Czarnecka et al., 2019 - - Unknown - - - - - DNA SEQ - - EDS, EDSCL1 - PubMed: Junkiert-Czarnecka et al., 2019 The patient's father harbours the same two sequence variants and has the same clinical picture. This is suggestive, but not conclusive, evidence that the EDS I phenotype is the result of the variants. - - - white - - - - 1 Anna Junkiert-Czarnecka
+/+? 2 c.193C>T r.(?) p.(Arg65Trp) missense substitution Unknown - likely pathogenic g.137582841C>T - - - COL5A1_000203 - PubMed: Leinøe et al., 2017 - - Unknown - - - - - DNA SEQ-NG - - EDS, EDSCL1 Patient 54 PubMed: Leinøe et al., 2017 The technique used was whole exome sequencing. - - - - - - - - 1 Raymond Dalgleish
+?/- 2 c.194G>A r.(?) p.(Arg65Gln) missense substitution Unknown - VUS g.137582842G>A - - - COL5A1_000258 - PubMed: Modi et al., 2017 - - Unknown - - - - - DNA PCR, SEQ, SEQ-NG - - ? - PubMed: Modi et al., 2017 This patient was born from a pregnancy complicated by preterm premature rupture of membranes (PPROM). The technique used was whole exome sequencing. - - - - - - - - 1 Raymond Dalgleish
-?/. - c.194G>A r.(?) p.(Arg65Gln) - - Unknown - likely benign g.137582842G>A - COL5A1(NM_000093.4):c.194G>A (p.R65Q) - COL5A1_000258 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 2 c.196C>T r.(?) p.(Arg66*) ) nonsense substitution Unknown - pathogenic g.137582844C>T - - - COL5A1_000175 - - - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - - This is a sporadic case (de novo mutation verified). - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
+/. 2 c.228_229del r.(?) p.(Arg76SerfsTer108) - - Unknown - pathogenic g.137582876_137582877del g.134691030_134691031del - - COL5A1_000557 - - - - Germline/De novo (untested) - - - - - DNA SEQ, SEQ-NG blood - EDS - - - - - Italy - - - - - 1 Lucia Micale
+?/+? 2 c.265C>T r.(?) p.(Gln89*) nonsense substitution Paternal (confirmed) - likely pathogenic g.137582913C>T - - - COL5A1_000230 - PubMed: Mao et al., 2017 - - Unknown - - - - - DNA SEQ-NG - - EDS, EDSCL1 III-1 PubMed: Mao et al., 2017 The patient's father also carried the c.265C>T variant. The technique used was whole exome sequencing. - - - - - - - - 1 Raymond Dalgleish
+/+ 2i c.277+1G>T r.? p.? splicing affected? substitution Unknown - pathogenic g.137582926G>T - - - COL5A1_000039 - PubMed: Wenstrup et al., 2000 - - Unknown - - - - - DNA, RNA PAGE, PCR, RT-PCR, HD - - EDS, EDSCL1 - PubMed: Wenstrup et al., 2000 The variant results in the skipping of exon 2. - - - - - - - - 1 Raymond Dalgleish
+/+ 2i c.278-2A>C r.? p.? splicing affected? substitution Unknown - pathogenic g.137591753A>C - - - COL5A1_000210 - - - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - - Father of affected individual AN_002576. - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
-?/. - c.278C>T r.(?) p.(Ala93Val) - - Unknown - likely benign g.137591755C>T g.134699909C>T COL5A1(NM_000093.4):c.278C>T (p.A93V), COL5A1(NM_000093.5):c.278C>T (p.A93V) - COL5A1_000070 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.278C>T r.(?) p.(Ala93Val) - - Unknown - likely benign g.137591755C>T g.134699909C>T COL5A1(NM_000093.4):c.278C>T (p.A93V), COL5A1(NM_000093.5):c.278C>T (p.A93V) - COL5A1_000070 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.278C>T r.(?) p.(Ala93Val) - - Unknown - likely benign g.137591755C>T g.134699909C>T COL5A1(NM_000093.4):c.278C>T (p.A93V), COL5A1(NM_000093.5):c.278C>T (p.A93V) - COL5A1_000070 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/- 3 c.278C>T r.(?) p.(Ala93Val) missense substitution Unknown - VUS g.137591755C>T - - - COL5A1_000070 - - - rs41306397 Unknown - - - - - ? ? - - ? - - - - - - - - - - - 1 Raymond Dalgleish
?/. - c.292G>A r.(?) p.(Glu98Lys) - - Unknown - VUS g.137591769G>A g.134699923G>A COL5A1(NM_000093.4):c.292G>A (p.E98K) - COL5A1_000444 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/. 3 c.305T>A r.(?) p.(Ile102Asn) missense substitution Paternal (confirmed) ACMG likely pathogenic (dominant) g.137591782T>A g.134699936T>A - - COL5A1_000590 - PubMed: Sen and Butler, 2019 - - Germline yes - - - - DNA SEQ-NG Peripheral blood - EDSCL1 1 PubMed: Sen 2019 2-generation family, affected son/father M no United States - - - - - 2 Nassim Louail
+?/? 3 c.305T>A r.(?) p.(Ile102Asn) missense substitution Unknown ACMG likely pathogenic (dominant) g.137591782T>A g.134699936T>A - - COL5A1_000590 - PubMed: Sen and Butler, 2019 - - Germline/De novo (untested) yes - - - - DNA SEQ - - EDSCL1 father PubMed: Sen and Butler, 2019 father M - United States - - - - - 1 Johan den Dunnen
+/+? 3 c.311C>G r.(?) p.(Thr104Arg) missense substitution Unknown - likely pathogenic g.137591788C>G - - - COL5A1_000193 - - - - Unknown - - - - - DNA, RNA PCR, RT-PCR, SEQ - - EDS, EDSCL1 - - This is a sporadic case (de novo mutation verified). - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
+/+? 3 c.311C>G r.(?) p.(Thr104Arg) missense substitution Unknown - likely pathogenic g.137591788C>G - - - COL5A1_000193 - PubMed: Savasta et al., 2015 - - Unknown - - - - - DNA ? - - EDS, EDSCL1 - PubMed: Savasta et al., 2015 The proband presented with unilateral periventricular heterotopia and epilepsy.Details of the COL5A1 variant are not presented in the paper but were provided post-publication by the authors. - - - - - - - - 1 Raymond Dalgleish
?/. - c.312_314del r.(?) p.(Thr105del) - - Unknown - VUS g.137591789_137591791del g.134699943_134699945del COL5A1(NM_000093.4):c.312_314delAAC (p.T105del) - COL5A1_000445 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.341C>A r.(?) p.(Ala114Asp) - - Unknown - likely benign g.137591818C>A g.134699972C>A COL5A1(NM_000093.4):c.341C>A (p.A114D), COL5A1(NM_000093.5):c.341C>A (p.A114D) - COL5A1_000343 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.341C>A r.(?) p.(Ala114Asp) - - Unknown - benign g.137591818C>A g.134699972C>A COL5A1(NM_000093.4):c.341C>A (p.A114D), COL5A1(NM_000093.5):c.341C>A (p.A114D) - COL5A1_000343 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.367C>G r.(?) p.(Gln123Glu) - - Unknown - VUS g.137591844C>G g.134699998C>G COL5A1(NM_000093.4):c.367C>G (p.Q123E) - COL5A1_000205 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/- 3 c.367C>G r.(?) p.(Gln123Glu) missense substitution Maternal (confirmed) - likely benign g.137591844C>G - - - COL5A1_000205 - PubMed: Junkiert-Czarnecka et al., 2019 - - Unknown - - - - - DNA SEQ - - EDS, EDSCL1 - PubMed: Junkiert-Czarnecka et al., 2019 - - - - - - - - - 1 Anna Junkiert-Czarnecka
-/- 3 c.367C>G r.(?) p.(Gln123Glu) missense substitution Unknown - likely benign g.137591844C>G - - - COL5A1_000205 described as variant of unknown significance, predicted by PROVEAN/SIFT/Condel/SuSPect to be non-damaging, predicted by Polyphen-2 to be damaging PubMed: Schubert 2016 - - Germline/De novo (untested) - - - - - DNA PCR, SEQ, SEQ-NG - - TAAD Pat7 PubMed: Schubert 2016 - - - United States - - - - - 1 Raymond Dalgleish
?/. - c.370G>C r.(?) p.(Gly124Arg) - - Unknown - VUS g.137591847G>C g.134700001G>C COL5A1(NM_000093.4):c.370G>C (p.G124R) - COL5A1_000344 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.370_381del r.(?) p.(Gly124_Gln127del) deletion - Unknown - likely pathogenic g.137591847_137591858del - - - COL5A1_000490 - PubMed: Colman 2021, Journal: Colman 2021 - - De novo - - - - - DNA SEQ-NG-I - - EDSCL1 AN_006303 PubMed: Colman 2021, Journal: Colman 2021 - - - Belgium - - - - - 1 Marlies Colman
-/. - c.378G>T r.(?) p.(Gln126His) - - Unknown - benign g.137591855G>T g.134700009G>T COL5A1(NM_000093.4):c.378G>T (p.Q126H), COL5A1(NM_000093.5):c.378G>T (p.Q126H) - COL5A1_000446 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.378G>T r.(?) p.(Gln126His) - - Unknown - benign g.137591855G>T - COL5A1(NM_000093.4):c.378G>T (p.Q126H), COL5A1(NM_000093.5):c.378G>T (p.Q126H) - COL5A1_000446 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 3 c.379C>T r.(?) p.(Gln127*) nonsense substitution Unknown - pathogenic g.137591856C>T - - - COL5A1_000107 - PubMed: Symoens et al., 2012 - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - PubMed: Symoens et al., 2012 - - - - - - - - - 1 Sofie Symoens
+/+ 3 c.379C>T r.(?) p.(Gln127*) nonsense substitution Unknown - pathogenic g.137591856C>T - - - COL5A1_000107 - PubMed: Morais et al., 2013 - - Unknown - - - - - DNA SEQ - - EDS, EDSCL1 - PubMed: Morais et al., 2013 The variant is said to segregate with the EDS phenotype in the proband and in two earlier generations. However, the description of the proband's parents as healthy appears contradictory. - - - - - - - - 1 Raymond Dalgleish
-?/. - c.408C>T r.(?) p.(Pro136=) - - Unknown - likely benign g.137591885C>T g.134700039C>T COL5A1(NM_000093.5):c.408C>T (p.P136=) - COL5A1_000107 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 3 c.420C>G r.(?) p.(Tyr140*) nonsense substitution Maternal (confirmed) - pathogenic g.137591897C>G - - - COL5A1_000212 - - - - Unknown - - - - - DNA SEQ-NG - - EDS, EDSCL1 - - Father of affected individual AN_006202, brother of affected individual AN_006203 and son of affected individual AN_006204.The technique used was the custom NGS Gene panel. - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
?/. 3 c.443G>A r.(?) p.(Gly148Asp) - - Unknown - VUS g.137591920G>A g.134700074G>A - - COL5A1_000601 - Leone 2023, submitted - - Germline - - - - - DNA SEQ, SEQ-NG blood - ? P-0165 Leone 2023, submitted - - - Italy - - - - - 1 Maria Pia Leone
?/. - c.446C>T r.(?) p.(Pro149Leu) - - Unknown - VUS g.137591923C>T g.134700077C>T COL5A1(NM_000093.4):c.446C>T (p.P149L) - COL5A1_000345 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 3 c.466del r.(?) p.(Arg156Glyfs*24) frameshift deletion Unknown - pathogenic g.137591943del - - - COL5A1_000022 - PubMed: Malfait et al., 2005 - - Unknown - - - - - DNA, RNA DHPLC, PCR, RT-PCR, SEQ, CSGE, SSCA - - EDS, EDSCL1 - PubMed: Malfait et al., 2005 The variant in this patient is incorrectly described as leading to p.R155fsX24. - - - - - - - - 1 Sofie Symoens
+/. 3i c.491+1G>T r.spl p.? - - Unknown - pathogenic g.137591969G>T g.134700123G>T - - COL5A1_000558 - - - - Germline/De novo (untested) - - - - - DNA SEQ, SEQ-NG blood - EDS - - - - - Italy - - - - - 1 Lucia Micale
+/+ 3i c.491+2T>G r.? p.? splicing affected? substitution Unknown - pathogenic g.137591970T>G - - - COL5A1_000029 - PubMed: Malfait et al., 2005 - - Unknown - - - - - DNA, RNA DHPLC, PCR, RT-PCR, SEQ, CSGE, SSCA - - EDS, EDSCL1 - PubMed: Malfait et al., 2005 The c.1588G>A variant is recorded in {dbSNP61735045} and in other variant databases at a frequency suggesting that it is not disease-causing.The splice site variant results in skipping of exon 3 which results in a frameshift. - - - - - - - - 1 Sofie Symoens
+?/. - c.493T>A r.(?) p.(Trp165Arg) missense substitution Unknown - likely pathogenic g.137593018T>A - - - COL5A1_000491 - PubMed: Colman 2021, Journal: Colman 2021 - - Germline yes - - - - DNA SEQ-NG-I - - EDSCL1 AN_006304 PubMed: Colman 2021, Journal: Colman 2021 - - - Belgium - - - - - 1 Marlies Colman
+/+ 4 c.495G>A r.(?) p.(Trp165*) nonsense substitution Unknown - pathogenic g.137593020G>A - - - COL5A1_000004 - PubMed: Mitchell et al., 2009 - - Unknown - - - - - DNA, RNA PCR, RT-PCR, SEQ, HD - - EDS, EDSCL1 P5 PubMed: Mitchell et al., 2009 - - - - - - - - - 1 Raymond Dalgleish
-?/. - c.514G>T r.(?) p.(Val172Phe) - - Unknown - likely benign g.137593039G>T g.134701193G>T COL5A1(NM_000093.4):c.514G>T (p.V172F), COL5A1(NM_000093.5):c.514G>T (p.V172F) - COL5A1_000204 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/-? 4 c.514G>T r.(?) p.(Val172Phe) missense substitution Paternal (confirmed) - VUS g.137593039G>T - - - COL5A1_000204 - PubMed: Junkiert-Czarnecka et al., 2019 - - Unknown - - - - - DNA SEQ - - EDS, EDSCL1 - PubMed: Junkiert-Czarnecka et al., 2019 The patient's father harbours the same two sequence variants and has the same clinical picture. This is suggestive, but not conclusive, evidence that the EDS I phenotype is the result of the variants. - - - white - - - - 1 Anna Junkiert-Czarnecka
-?/. - c.514G>T r.(?) p.(Val172Phe) - - Unknown - likely benign g.137593039G>T - COL5A1(NM_000093.4):c.514G>T (p.V172F), COL5A1(NM_000093.5):c.514G>T (p.V172F) - COL5A1_000204 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.521del r.(?) p.(Lys174Argfs*6) frameshift deletion, small Unknown - pathogenic g.137593045del - - - COL5A1_000492 - PubMed: Colman 2021, Journal: Colman 2021 - - De novo - - - - - DNA SEQ-NG-I - - EDSCL1 AN_006305 PubMed: Colman 2021, Journal: Colman 2021 - - - Belgium - - - - - 1 Marlies Colman
+/+? 4 c.532A>C r.(?) p.(Thr178Pro) missense substitution Unknown - likely pathogenic g.137593057A>C - - - COL5A1_000148 - PubMed: Ritelli et al., 2013 - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - PubMed: Ritelli et al., 2013 This is a sporadic case (de novo mutation verified). - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
+/+ 4 c.554dup r.(?) p.(Lys186Glufs*29) frameshift duplication Unknown - pathogenic g.137593079dup - - - COL5A1_000108 - PubMed: Symoens et al., 2012 - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - PubMed: Symoens et al., 2012 - - - - - - - - - 1 Sofie Symoens
+/. 4 c.564del r.(?) p.(Lys189AsnfsTer10) - - Unknown - pathogenic g.137593089del g.134701243del 564delC - COL5A1_000559 - - - - Germline/De novo (untested) - - - - - DNA SEQ, SEQ-NG blood - EDS - - - - - Italy - - - - - 1 Lucia Micale
-?/. - c.573C>T r.(?) p.(Leu191=) - - Unknown - likely benign g.137593098C>T - COL5A1(NM_000093.4):c.573C>T (p.L191=), COL5A1(NM_000093.5):c.573C>T (p.L191=) - COL5A1_000346 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.573C>T r.(?) p.(Leu191=) - - Unknown - benign g.137593098C>T - COL5A1(NM_000093.4):c.573C>T (p.L191=), COL5A1(NM_000093.5):c.573C>T (p.L191=) - COL5A1_000346 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.574G>A r.(?) p.(Asp192Asn) - - Unknown - benign g.137593099G>A g.134701253G>A COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N) - COL5A1_000053 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.574G>A r.(?) p.(Asp192Asn) - - Unknown - benign g.137593099G>A g.134701253G>A COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N) - COL5A1_000053 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.574G>A r.(?) p.(Asp192Asn) - - Unknown - benign g.137593099G>A g.134701253G>A COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N) - COL5A1_000053 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/-? 4 c.574G>A r.(?) p.(Asp192Asn) missense substitution Maternal (confirmed) - VUS g.137593099G>A - - - COL5A1_000053 - PubMed: Grond-Ginsbach et al., 1999 - - Unknown - - - - - DNA, RNA PCR, RT-PCR, SSCA - - EDS, EDSCL1 - PubMed: Grond-Ginsbach et al., 1999 The variant was found in siblings who are also described as Family III in PubMed: Martin et al., 2006. In that later study, the variant was also detected in 2 of 150 healthy control patients. This is strong evidence that it is not disease-causing. - - - - - - - - 1 Raymond Dalgleish
-/. - c.574G>A r.(?) p.(Asp192Asn) - - Unknown - benign g.137593099G>A - COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N) - COL5A1_000053 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.583G>A r.(?) p.(Asp195Asn) - - Unknown - VUS g.137593108G>A - COL5A1(NM_000093.5):c.583G>A (p.D195N) - COL5A1_000641 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.597C>G r.(?) p.(Ile199Met) - - Unknown - likely benign g.137593122C>G g.134701276C>G COL5A1(NM_000093.3):c.597C>G (p.(Ile199Met)) - COL5A1_000347 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. 4 c.598G>A r.(?) p.(Asp200Asn) - - Unknown - VUS g.137593123G>A g.134701277G>A - - COL5A1_000438 - PubMed: Neubauer 2017, Journal: Neubauer 2017 - rs142890619 Germline ? - - - - DNA SEQ-NG-I - - SIDS SIDS005 PubMed: Neubauer 2017 Journal: Neubauer 2017 - M ? Switzerland Europe 00y04m - - - 1 Cordula Haas
?/. - c.598G>A r.(?) p.(Asp200Asn) - - Unknown - VUS g.137593123G>A g.134701277G>A COL5A1(NM_000093.4):c.598G>A (p.D200N) - COL5A1_000438 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.654+234G>A r.(=) p.(=) - - Unknown - likely benign g.137593413G>A - COL5A1(NM_000093.5):c.654+234G>A - COL5A1_000627 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.655-2A>C r.spl? p.? splicing affected - Unknown - likely pathogenic g.137619110A>C - - - COL5A1_000493 - PubMed: Colman 2021, Journal: Colman 2021 - - De novo - - - - - DNA SEQ-NG-I - - EDSCL1 AN_006306 PubMed: Colman 2021, Journal: Colman 2021 - - - Belgium - - - - - 1 Marlies Colman
+/+ 4i c.655-2A>G r.? p.? splicing affected? substitution Unknown - pathogenic g.137619110A>G - - - COL5A1_000048 - PubMed: Takahara et al., 2002 - - Unknown - - - - - DNA, RNA PAGE, PCR, RT-PCR, SEQ, Southern - - EDS, EDSCL1 - PubMed: Takahara et al., 2002 The major outcome of this variant is skipping of exons 5 and 6. - - - - - - - - 1 Raymond Dalgleish
+/+ 4i_6i c.(654+1_655-1)_(924+1_925-1)del r.? p.? deletion, multi exon deletion Unknown - pathogenic g.? - - - COL5A1_000194 - - - - Unknown - - - - - DNA MLPA, PCR, SEQ - - EDS, EDSCL1 - - For MLPA analyses the P331-B1 and P332-B1 probemixes from MRC Holland were used. The probemixes contain one probe for each exon of the COL5A1 gene with the exception of exons 12, 26, 33, 36, 39, 49, 54, 59 and 66. - - Italy Italian - - - - 1 Marco Ritelli, Marina Colombi
?/. - c.658G>A r.(?) p.(Asp220Asn) - - Unknown - VUS g.137619115G>A - COL5A1(NM_000093.4):c.658G>A (p.D220N) - COL5A1_000545 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.660C>T r.(?) p.(Asp220=) - - Unknown - likely benign g.137619117C>T - COL5A1(NM_000093.4):c.660C>T (p.D220=) - COL5A1_000546 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 5 c.664C>T r.(?) p.(Gln222*) nonsense substitution Unknown - pathogenic g.137619121C>T - - - COL5A1_000016 - PubMed: Malfait et al., 2005 - - Unknown - - - - - DNA, RNA DHPLC, PCR, RT-PCR, SEQ, CSGE, SSCA - - EDS, EDSCL1 - PubMed: Malfait et al., 2005 - - - - - - - - - 1 Sofie Symoens
?/. 5 c.668A>C r.(?) p.(Gln223Pro) - - Unknown - VUS g.137619125A>C g.134727279A>C - - COL5A1_000560 - - - - Germline/De novo (untested) - - - - - DNA SEQ, SEQ-NG blood - ? - - - - - Italy - - - - - 1 Lucia Micale
?/. - c.692G>A r.(?) p.(Arg231Gln) - - Unknown - VUS g.137619149G>A g.134727303G>A COL5A1(NM_000093.4):c.692G>A (p.R231Q) - COL5A1_000348 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 5 c.701_702dup r.(?) p.(Asp235Metfs*53) frameshift duplication Unknown - pathogenic g.137619158_137619159dup - - - COL5A1_000110 - PubMed: Symoens et al., 2012 - - Unknown - - - - - DNA PCR, SEQ - - EDS, EDSCL1 - PubMed: Symoens et al., 2012 - - - - - - - - - 1 Sofie Symoens
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