Global Variome shared LOVD
COL5A1 (collagen type V alpha 1 chain)
LOVD v.3.0 Build 29 [
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Curator:
Raymond Dalgleish
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Ehlers Danlos Syndrome Variant Database
ADAMTS2 (ADAM metallopeptidase with thrombospondin type 1 motif 2)
AEBP1 (AE binding protein 1)
B3GALT6 (beta-1,3-galactosyltransferase 6)
B4GALT7 (beta-1,4-galactosyltransferase 7)
C1R (complement component 1, r subcomponent)
C1S (complement component 1, s subcomponent)
CHST14 (carbohydrate sulfotransferase 14)
COL1A1 (collagen type I alpha 1 chain)
COL1A2 (collagen type I alpha 2 chain)
COL3A1 (collagen type III alpha 1 chain)
COL5A1 (collagen type V alpha 1 chain)
COL5A2 (collagen type V alpha 2 chain)
DSE (dermatan sulfate epimerase)
FKBP14 (FKBP prolyl isomerase 14)
PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1)
PLOD3 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 3)
TNXB (tenascin XB)
The variants shown are described using the
NM_000093.4
NM_001278074.1
transcript reference sequence.
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Exon
: number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = from intron 2 to intron 7, 8i_9 = intron 8/exon 9 boundary, _1 = 5' to exon 1, 18_ = 3' of exon 18, _1_18_ = encompassing the entire 18-exon gene
DNA change (cDNA)
: description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup. For deletions/duplications extending beyond the reference transcript resp. {0}/{2} is used to replace del/dup. Extent of the deletion/duplication should be specified using the genomic description (g.). "-" indicates the variant described on genomic level does not affect the coding DNA reference sequence.
RNA change
: description of variant at RNA level (following HGVS recommendations).
r.123c>u
r.? = unknown
r.(?) = RNA not analysed but probably transcribed copy of DNA variant
r.spl? = RNA not analysed but variant probably affects splicing
r.(spl?) = RNA not analysed but variant may affect splicing
r.0? = change expected to abolish transcription
Protein
: description of variant at protein level (following HGVS recommendations).
p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
p.Arg345Pro = change derived from RNA analysis
p.? = unknown effect
p.0? = probably no protein produced
Predicted
: predicted consequence of variant (RNA/protein level)
All options:
missense
nonsense
frameshift
no-stop
silent
splicing affected
splicing affected, exon skipped
splicing affected?
deletion
deletion, small
deletion, large
deletion, exon
deletion, multi exon
duplication
duplication, small
duplication, large
insertion
insertion, small
insertion, large
delins = insertion/deletion
conversion
other/complex
Type/DNA
: type of variant at DNA level. NOTE: can be derived automatically from the variant description (for all levels)
All options:
substitution
deletion
deletion, small
deletion, large
duplication
duplication, small
duplication, large
insertion
insertion, small
insertion, large
delins = insertion/deletion
inversion
conversion
transposition
translocation
other/complex
Allele
: On which allele is the variant located? Does not necessarily imply inheritance! 'Paternal' (confirmed or inferred), 'Maternal' (confirmed or inferred), 'Parent #1' or #2 for compound heterozygosity without having screened the parents, 'Unknown' for heterozygosity without having screened the parents, 'Both' for homozygozity.
Classification method
: The method used for the clinical classification of this variant.
All options:
ACMG
ACGS
EAHAD-CFDB
ENIGMA
IARC
InSiGHT
kConFab
other
Clinical classification
: Clinical classification of variant, preferably based on standardised criteria (e.g. ACMG), directed on the clinical consequences as published/submitted, indicated using an enriched system including inheritance: e.g. pathogenic, pathogenic (dominant), pathogenic (recessive), pathogenic (!), pathogenic (maternal), pathogenic (paternal). Standard inheritance is covered by dominant/recessive, imprinting by maternal/paternal. A '!' warns for exceptional circumstances to be explained in the 'Remarks' field (low penetrance, variants pathogenic in heterozygous state only, hypomorphic/hypermorphic variants, protective variants, etc.). Non-disease consequences (e.g. drug metabolism (pharmacogenetics), risk factor, blood group, tasting bitter) are indicated using additions to the benign classification; benign (dominant), benign (recessive), benign (!), etc. The value 'association' is used for variants associated with a phenotype and 'NA' for variants from in vitro/in silico records. NOTE: classification may differ from the opinion of the curator as given in a variant SUMMARY-record or the 'Functional effect concluded'). NOTE: pathogenic/likely pathogenic should go together with "variant (probably) affects function" In ClassFunctional.
All options:
pathogenic
pathogenic (dominant)
pathogenic (recessive)
pathogenic (!)
pathogenic (maternal)
pathogenic (paternal)
likely pathogenic
likely pathogenic (dominant)
likely pathogenic (recessive)
likely pathogenic (!)
likely pathogenic (maternal)
likely pathogenic (paternal)
VUS
VUS (!)
likely benign
likely benign (dominant)
likely benign (recessive)
likely benign (!)
likely benign (maternal)
likely benign (paternal)
benign
benign (dominant)
benign (recessive)
benign (!)
benign (maternal)
benign (paternal)
association
unclassified
NA
DNA change (genomic) (hg19)
: HGVS description of variant at DNA level, based on the genomic (chromosomal) DNA reference sequence; e.g. g.12345678C>T, g.12345679del, g.12345678_12345890dup
DNA change (hg38)
: HGVS description of variant at DNA level, based on the hg38 genomic (chromosomal) eference sequence; e.g. g.12345678C>T, g.12345679del, g.12345678_12345890dup
Published as
: listed only when different from "DNA change"; variant as reported originally (e.g. 521delT). Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G)
ISCN
: description of the variant according to ISCN nomenclature
DB-ID
: database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro
Variant remarks
: remarks regarding variant described, e.g. germline mosaicism in mother, 345 kb deletion, muscle RNA analysed, not in 200 control chromosomes tested, on founder haplotype, etc.
Reference
: publication describing the variant submitted, incl. links to OMIM, PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
ClinVar ID
: ID of variant in ClinVar database
dbSNP ID
: the dbSNP ID
Origin
: Origin of variant/record: Germline = in all cells, De novo = in all cells, but not in either parent, Germline/De novo (untested) = in all cells, parents not tested (use only when De novo is likely, e.g. isolated/sporadic cases with dominant disease), Somatic = present in a subset of cells, but not in either parent, Uniparental disomy = from parental disomy (maternal or paternal), CLASSIFICATION record = submitter only sharing variant classification (note another report may share Individual data), SUMMARY record = master summary record from curator (may link to another database), In vitro (cloned) = data resulting from in vitro functional assays, animal model = data from animal model, Artefact = false positive variant call, DUPLICATE record = variant already described on another chromosome (e.g. unbalanced translocation, duplicating transposition, 2nd fusion transcript, etc.)
All options:
Germline
De novo
Germline/De novo (untested)
Somatic
Uniparental disomy
Uniparental disomy, maternal allele
Uniparental disomy, paternal allele
CLASSIFICATION record
SUMMARY record
In vitro (cloned)
In silico
animal model
Artefact
DUPLICATE record
Unknown
Not applicable
Segregation
: Indicates whether the variant segregates with the phenotype (yes), does not segregate with the phenotype (no) or segregation is unknown (?)
All options:
? = unknown
yes = segregates with phenotype
no = does not segregate with phenotype
- = not applicable
Frequency
: frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested)
Re-site
: restriction enzyme recognition site created (+) or destroyed (-); e.g. BglII+;BamHI-
VIP
: variant VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Methylation
: result of methylation test; GOM (gain of methylation), LOM (loss of methylation), 30% (30% methylated). NOTE: when several tests were done mention the method as well (e.g. MS-PCR 75%)
Template
: Template(s) used to detect the sequence variant; DNA (genomic DNA), RNA (cDNA) or protein
All options:
DNA
RNA = RNA (cDNA)
protein
? = unknown
Technique
: technique(s) used to identify the sequence variant.
All options:
? = unknown
ARMS = amplification refractory mutation system
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
ASO = allele-specific oligo hybridisation
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
COBRA = Combined Bisulfite Restriction Analysis
CSCE = Conformation Sensitive Capillary Electrophoresis
CSGE = Conformation Sensitive Gel Electrophoresis
ddF = dideoxy Fingerprinting
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
DSCA = Double-Strand DNA Conformation Analysis
DSDI = Detection Small Deletions and Insertions
EMC = Enzymatic Mismatch Cleavage
expr = expression analysis
FISH = Fluorescent In-Situ Hybridisation
FISHf = fiberFISH
HD = HeteroDuplex analysis
HPLC = High-Performance Liquid Chromatography
IEF = IsoElectric Focussing
IHC = Immuno-Histo-Chemistry
Invader = Invader assay
MAPH = Multiplex Amplifiable Probe Hybridisation
MAQ = Multiplex Amplicon Quantification
MCA = Melting Curve Analysis, high-resolution (HRMA)
microscope = microscopic analysis (karyotype)
microsat = microsatellite genotyping
minigene = expression minigene construct
MIP = Molecular Inversion Probe amplification
MIPsm = singele molecule Molecular Inversion Probe amplification
MLPA = Multiplex Ligation-dependent Probe Amplification
MLPA-ms = Multiplex Ligation-dependent Probe Amplification, methylation specific
MS = mass spectrometry
Northern = Northern blotting
NUC = nuclease digestion (RNAseT1, S1)
OM = optical mapping
PAGE = Poly-Acrylamide Gel-Electrophoresis
PCR = Polymerase Chain Reaction
PCRdd = PCR, digital droplet
PCRdig = PCR + restriction enzyme digestion
PCRh = PCR, haloplex
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRms = PCR, methylation sensitive
PCRq = PCR, quantitative (qPCR)
PCRrp = PCR, repeat-primed (RP-PCR)
PCRsqd = PCR, semi-quantitative duplex
PE = primer extension (APEX, SNaPshot)
PEms = primer extension, methylation-sensitive single-nucleotide
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
PTT = Protein Truncation Test
RFLP = Restriction Fragment Length Polymorphisms
RT-PCR = Reverse Transcription and PCR
RT-PCRq = Reverse Transcription and PCR, quantitative
SBE = Single Base Extension
SEQ = SEQuencing (Sanger)
SEQb = bisulfite SEQuencing
SEQp = pyroSequencing
SEQms = sequencing, methylation specific
SEQ-ON = next-generation sequencing - Oxford Nanopore
SEQ-NG = next-generation sequencing
SEQ-NG-RNA = next-generation sequencing RNA
SEQ-NG-H = next-generation sequencing - Helicos
SEQ-NG-I = next-generation sequencing - Illumina/Solexa
SEQ-NG-IT = next-generation sequencing - Ion Torrent
SEQ-NG-R = next-generation sequencing - Roche/454
SEQ-NG-S = next-generation sequencing - SOLiD
SEQ-PB = next-generation sequencing - Pacific Biosciences
SNPlex = SNPlex
Southern = Southern blotting
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = fluorescent SSCA (SSCP)
STR = Short Tandem Repeat
TaqMan = TaqMan assay
Western = Western blotting
- = not applicable
Tissue
: tissue type used for analysis
Remarks
: remarks regarding the screening like WGS (whole genome sequencing), WES (whole exome sequencing, gene panel (incl. a list of genes analysed), etc.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
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all entries after June, 2020
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all entries exactly matching 23 or 24
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all entries not exactly matching 23
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Effect
Exon
DNA change (cDNA)
RNA change
Protein
Predicted
Type/DNA
Allele
Classification method
Clinical classification
DNA change (genomic) (hg19)
DNA change (hg38)
Published as
ISCN
DB-ID
Variant remarks
Reference
ClinVar ID
dbSNP ID
Origin
Segregation
Frequency
Re-site
VIP
Methylation
Template
Technique
Tissue
Remarks
Disease
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Panel size
Owner
?/.
11i_66_
c.(1494+1_1495-3373)_*2540{2}
r.?
p.?
-
-
Unknown
-
VUS (!)
g.(?_137639015)_(141025921_?)dup
-
dup ex12067, hg19 137639015-141025921dup
-
COL5A1_000599
3.4 Mb duplication encompassing exons 12-67 of COL5A1, probably preceeded by deletion ex2-11
PubMed: Kuroda 2018
-
-
De novo
-
-
-
-
-
DNA
arrayCGH
Peripheral blood
-
EDSCL1
1
PubMed: Kuroda et al., 2018
-
M
no
Japan
-
-
-
-
-
1
Nassim Louail
+/+
63i_65i
c.(5067+1_5068-1)_(5370+?)del
r.?
p.?
deletion, multi exon
deletion
Unknown
-
pathogenic
g.?
-
-
-
COL5A1_000195
-
-
-
-
Unknown
-
-
-
-
-
DNA
MLPA, PCR, SEQ
-
-
EDS, EDSCL1
-
-
For MLPA analyses the P331-B1 and P332-B1 probemixes from MRC Holland were used. The probemixes contain one probe for each exon of the COL5A1 gene with the exception of exons 12, 26, 33, 36, 39, 49, 54, 59 and 66.
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
+/+
01-11
chr9.hg19:g.(137,440,166_137,442,686)_(137,633,699_137,638,368)dup
r.?
p.?
other/complex
duplication
Paternal (confirmed)
-
pathogenic
g.?
-
-
-
COL5A1_000164
-
PubMed: Ritelli et al., 2013
-
-
Unknown
-
-
-
-
-
DNA
MLPA, PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Ritelli et al., 2013
Brother of affected individual AN_002536 and son of affected individual AN_002537.
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
?/.
-
c.28C>T
r.(?)
p.(Arg10Cys)
-
-
Unknown
-
VUS
g.137534061C>T
-
-
-
COL5A1_000526
-
-
-
-
Germline
-
-
-
-
-
DNA
SEQ-NG-S
-
-
?
-
-
-
?
-
-
-
-
-
-
-
1
Andreas Laner
-?/.
-
c.36G>C
r.(?)
p.(=)
-
-
Unknown
-
likely benign
g.137534069G>C
-
COL5A1(NM_000093.5):c.36G>C (p.A12=)
-
COL5A1_000640
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
01
c.61C>T
r.(?)
p.(Pro21Ser)
missense
substitution
Unknown
-
benign
g.137534094C>T
g.134642248C>T
COL5A1(NM_000093.4):c.61C>T (p.P21S)
-
COL5A1_000440
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/-
1
c.66G>A
r.(?)
p.(=)
silent
substitution
Unknown
-
VUS
g.137534099G>A
-
-
-
COL5A1_000069
-
-
-
rs13288533
Unknown
-
-
-
-
-
?
?
-
-
?
-
-
-
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/+
1
c.74T>C
r.(?)
p.(Leu25Pro)
missense
substitution
Unknown
-
pathogenic
g.137534107T>C
-
-
-
COL5A1_000051
-
PubMed: Symoens et al., 2009
-
-
Unknown
-
-
-
-
-
DNA, RNA
PAGE, PCR, RT-PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Symoens et al., 2009
-
-
-
-
white
-
-
-
-
1
Sofie Symoens
+/+
1
c.74T>G
r.(?)
p.(Leu25Arg)
missense
substitution
Unknown
-
pathogenic
g.137534107T>G
-
-
-
COL5A1_000050
-
PubMed: Symoens et al., 2009
-
-
Unknown
-
-
-
-
-
DNA, RNA
PAGE, PCR, RT-PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Symoens et al., 2009
-
-
-
-
white
-
-
-
-
1
Sofie Symoens
-?/.
-
c.82_84del
r.(?)
p.(Leu28del)
-
-
Unknown
-
likely benign
g.137534115_137534117del
g.134642269_134642271del
COL5A1(NM_000093.4):c.82_84delCTG (p.L28del), COL5A1(NM_000093.5):c.82_84delCTG (p.L28del)
-
COL5A1_000442
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.82_84del
r.(?)
p.(Leu28del)
-
-
Unknown
-
benign
g.137534115_137534117del
-
COL5A1(NM_000093.4):c.82_84delCTG (p.L28del), COL5A1(NM_000093.5):c.82_84delCTG (p.L28del)
-
COL5A1_000442
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.82_84dup
r.(?)
p.(Leu28dup)
-
-
Unknown
-
likely benign
g.137534115_137534117dup
g.134642269_134642271dup
COL5A1(NM_000093.5):c.82_84dupCTG (p.L28dup)
-
COL5A1_000340
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
1
c.87G>A
r.(?)
p.(Trp29*)
nonsense
substitution
Unknown
-
pathogenic
g.137534120G>A
-
-
-
COL5A1_000147
-
PubMed: Ritelli et al., 2013
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Ritelli et al., 2013
This is a sporadic case (de novo mutation verified).
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
-?/.
-
c.89C>T
r.(?)
p.(Ala30Val)
-
-
Unknown
-
likely benign
g.137534122C>T
g.134642276C>T
COL5A1(NM_000093.4):c.89C>T (p.A30V)
-
COL5A1_000341
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/.
-
c.109+3A>T
r.spl?
p.?
splicing affected
-
Unknown
-
pathogenic
g.137534145A>T
-
-
-
COL5A1_000488
-
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-I
-
-
EDSCL1
AN_006301
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
-
Belgium
-
-
-
-
-
1
Marlies Colman
-?/.
-
c.109+208C>T
r.(=)
p.(=)
-
-
Unknown
-
likely benign
g.137534350C>T
g.134642504C>T
COL5A1(NM_000093.5):c.109+208C>T
-
COL5A1_000421
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.109+216C>G
r.(=)
p.(=)
-
-
Unknown
-
likely benign
g.137534358C>G
-
COL5A1(NM_000093.5):c.109+216C>G
-
COL5A1_000626
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/.
1i_11i
c.(?_109+9869)_(1495-4835_?)del
r.?
p.?
-
-
Unknown
-
pathogenic
g.(?_137544011)_(137637553_?)del
-
del ex2-11, hg19 137544011-137637553del
-
COL5A1_000598
-
94 kb deletion
-
-
De novo
-
-
-
-
-
DNA
arrayCGH
Peripheral blood
-
EDSCL1
1
PubMed: Kuroda et al., 2018
-
M
no
Japan
-
-
-
-
-
1
Nassim Louail
+?/.
1i_65i_
c.(109+1_110-1)_(5370+1_?)del
r.?
p.0?
deletion, multi exon
deletion, large
Paternal (confirmed)
ACMG
pathogenic (dominant)
g.(137534143_137582757)_(137727051_?)del
g.(134642297_134690911)_(134835205_?)del
-
-
COL5A1_000544
germline mosaicism in father, deletion of COL5A1 exons 2-65 (exon 66 not tested), heterozygous
-
-
-
Germline
-
-
-
-
-
DNA
MLPA
Blood
-
EDSCL1
-
PubMed: Strang-Karlsson et al., 2022
Child who inherited gross deletion from mosaic unaffected father
F
no
Finland
-
-
-
-
-
2
Sonja Strang-Karlsson
?/.
1i_65i_
c.(109+1_110-1)_(5370+1_?)del
r.?
p.0?
deletion, multi exon
deletion, large
Unknown
ACMG
pathogenic
g.(137534143_137582757)_(137727051_?)del
g.(134642297_134690911)_(134835205_?)del
-
-
COL5A1_000544
Multiexon deletion of exons 2-65 (66 not tested)
-
-
-
Unknown
-
-
-
-
-
DNA
MLPA
Blood, DNA from skin
-
Healthy/Control
-
PubMed: Strang-Karlsson et al., 2022
unaffected
M
no
Finland
-
-
-
-
-
1
Sonja Strang-Karlsson
+/.
-
c.116_117dup
r.(?)
p.(Ala40Glnfs*5)
frameshift
-
Unknown
-
pathogenic
g.137582764_137582763insCA
-
-
-
COL5A1_000489
-
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ-NG-I
-
-
EDSCL1
AN_006302
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
-
Belgium
-
-
-
-
-
1
Marlies Colman
-?/.
-
c.126C>T
r.(?)
p.(Leu42=)
-
-
Unknown
-
likely benign
g.137582774C>T
g.134690928C>T
COL5A1(NM_000093.4):c.126C>T (p.L42=), COL5A1(NM_000093.5):c.126C>T (p.L42=)
-
COL5A1_000443
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.126C>T
r.(?)
p.(Leu42=)
-
-
Unknown
-
likely benign
g.137582774C>T
g.134690928C>T
COL5A1(NM_000093.4):c.126C>T (p.L42=), COL5A1(NM_000093.5):c.126C>T (p.L42=)
-
COL5A1_000443
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.126C>T
r.(?)
p.(Leu42=)
-
-
Unknown
-
likely benign
g.137582774C>T
-
COL5A1(NM_000093.4):c.126C>T (p.L42=), COL5A1(NM_000093.5):c.126C>T (p.L42=)
-
COL5A1_000443
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
./.
-
c.145C>T
r.(?)
p.(His49Tyr)
-
-
Unknown
-
likely pathogenic
g.137582793C>T
g.134690947C>T
NM_000093.4(COL5A1):c.145C>T p.(His49Tyr)
-
COL5A1_000439
variant could not be associated with disease phenotype
PubMed: Vogelaar 2017
,
Journal: Vogelaar 2017
-
-
Germline
-
-
-
-
-
DNA
SEQ-NG
-
-
cancer, gastric
Vogelaar-520A
PubMed: Vogelaar 2017
,
Journal: Vogelaar 2017
54 patients from 53 families with genetically unexplained diffuse-type and intestinal-type gastric cancer
-
-
-
-
-
-
-
-
1
Marjolijn JL Ligtenberg
?/.
-
c.145C>T
r.(?)
p.(His49Tyr)
-
-
Unknown
-
VUS
g.137582793C>T
g.134690947C>T
COL5A1(NM_000093.4):c.145C>T (p.H49Y)
-
COL5A1_000439
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
-
c.145C>T
r.(?)
p.(His49Tyr)
-
-
Unknown
-
VUS
g.137582793C>T
-
COL5A1(NM_000093.4):c.145C>T (p.H49Y)
-
COL5A1_000439
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
2
c.155C>G
r.(?)
p.(Pro52Arg)
-
-
Unknown
-
VUS
g.137582803C>G
g.134690957C>G
-
-
COL5A1_000556
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
?
-
-
-
-
-
Italy
-
-
-
-
-
1
Lucia Micale
+/+
2
c.160G>T
r.(?)
p.(Gly54*)
nonsense
substitution
Unknown
-
pathogenic
g.137582808G>T
-
-
-
COL5A1_000106
-
PubMed: Symoens et al., 2012
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Symoens et al., 2012
-
-
-
-
-
-
-
-
-
1
Sofie Symoens
-?/.
-
c.187G>A
r.(?)
p.(Ala63Thr)
-
-
Unknown
-
likely benign
g.137582835G>A
-
COL5A1(NM_000093.4):c.187G>A (p.A63T)
-
COL5A1_000478
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.193C>T
r.(?)
p.(Arg65Trp)
-
-
Unknown
-
likely benign
g.137582841C>T
g.134690995C>T
COL5A1(NM_000093.4):c.193C>T (p.R65W), COL5A1(NM_000093.5):c.193C>T (p.R65W)
-
COL5A1_000203
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.193C>T
r.(?)
p.(Arg65Trp)
-
-
Unknown
-
likely benign
g.137582841C>T
g.134690995C>T
COL5A1(NM_000093.4):c.193C>T (p.R65W), COL5A1(NM_000093.5):c.193C>T (p.R65W)
-
COL5A1_000203
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
-
c.193C>T
r.(?)
p.(Arg65Trp)
-
-
Unknown
-
VUS
g.137582841C>T
g.134690995C>T
COL5A1(NM_000093.4):c.193C>T (p.R65W), COL5A1(NM_000093.5):c.193C>T (p.R65W)
-
COL5A1_000203
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+?
2
c.193C>T
r.(?)
p.(Arg65Trp)
missense
substitution
Paternal (confirmed)
-
likely pathogenic
g.137582841C>T
-
-
-
COL5A1_000203
-
PubMed: Junkiert-Czarnecka et al., 2019
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSCL1
-
PubMed: Junkiert-Czarnecka et al., 2019
The patient's father harbours the same two sequence variants and has the same clinical picture. This is suggestive, but not conclusive, evidence that the EDS I phenotype is the result of the variants.
-
-
-
white
-
-
-
-
1
Anna Junkiert-Czarnecka
+/+?
2
c.193C>T
r.(?)
p.(Arg65Trp)
missense
substitution
Unknown
-
likely pathogenic
g.137582841C>T
-
-
-
COL5A1_000203
-
PubMed: Leinøe et al., 2017
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG
-
-
EDS, EDSCL1
Patient 54
PubMed: Leinøe et al., 2017
The technique used was whole exome sequencing.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+?/-
2
c.194G>A
r.(?)
p.(Arg65Gln)
missense
substitution
Unknown
-
VUS
g.137582842G>A
-
-
-
COL5A1_000258
-
PubMed: Modi et al., 2017
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ, SEQ-NG
-
-
?
-
PubMed: Modi et al., 2017
This patient was born from a pregnancy complicated by preterm premature rupture of membranes (PPROM). The technique used was whole exome sequencing.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
-?/.
-
c.194G>A
r.(?)
p.(Arg65Gln)
-
-
Unknown
-
likely benign
g.137582842G>A
-
COL5A1(NM_000093.4):c.194G>A (p.R65Q)
-
COL5A1_000258
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
2
c.196C>T
r.(?)
p.(Arg66*) )
nonsense
substitution
Unknown
-
pathogenic
g.137582844C>T
-
-
-
COL5A1_000175
-
-
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
-
This is a sporadic case (de novo mutation verified).
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
+/.
2
c.228_229del
r.(?)
p.(Arg76SerfsTer108)
-
-
Unknown
-
pathogenic
g.137582876_137582877del
g.134691030_134691031del
-
-
COL5A1_000557
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
EDS
-
-
-
-
-
Italy
-
-
-
-
-
1
Lucia Micale
+?/+?
2
c.265C>T
r.(?)
p.(Gln89*)
nonsense
substitution
Paternal (confirmed)
-
likely pathogenic
g.137582913C>T
-
-
-
COL5A1_000230
-
PubMed: Mao et al., 2017
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG
-
-
EDS, EDSCL1
III-1
PubMed: Mao et al., 2017
The patient's father also carried the c.265C>T variant. The technique used was whole exome sequencing.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/+
2i
c.277+1G>T
r.?
p.?
splicing affected?
substitution
Unknown
-
pathogenic
g.137582926G>T
-
-
-
COL5A1_000039
-
PubMed: Wenstrup et al., 2000
-
-
Unknown
-
-
-
-
-
DNA, RNA
PAGE, PCR, RT-PCR, HD
-
-
EDS, EDSCL1
-
PubMed: Wenstrup et al., 2000
The variant results in the skipping of exon 2.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/+
2i
c.278-2A>C
r.?
p.?
splicing affected?
substitution
Unknown
-
pathogenic
g.137591753A>C
-
-
-
COL5A1_000210
-
-
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
-
Father of affected individual AN_002576.
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
-?/.
-
c.278C>T
r.(?)
p.(Ala93Val)
-
-
Unknown
-
likely benign
g.137591755C>T
g.134699909C>T
COL5A1(NM_000093.4):c.278C>T (p.A93V), COL5A1(NM_000093.5):c.278C>T (p.A93V)
-
COL5A1_000070
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.278C>T
r.(?)
p.(Ala93Val)
-
-
Unknown
-
likely benign
g.137591755C>T
g.134699909C>T
COL5A1(NM_000093.4):c.278C>T (p.A93V), COL5A1(NM_000093.5):c.278C>T (p.A93V)
-
COL5A1_000070
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.278C>T
r.(?)
p.(Ala93Val)
-
-
Unknown
-
likely benign
g.137591755C>T
g.134699909C>T
COL5A1(NM_000093.4):c.278C>T (p.A93V), COL5A1(NM_000093.5):c.278C>T (p.A93V)
-
COL5A1_000070
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/-
3
c.278C>T
r.(?)
p.(Ala93Val)
missense
substitution
Unknown
-
VUS
g.137591755C>T
-
-
-
COL5A1_000070
-
-
-
rs41306397
Unknown
-
-
-
-
-
?
?
-
-
?
-
-
-
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
?/.
-
c.292G>A
r.(?)
p.(Glu98Lys)
-
-
Unknown
-
VUS
g.137591769G>A
g.134699923G>A
COL5A1(NM_000093.4):c.292G>A (p.E98K)
-
COL5A1_000444
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+?/.
3
c.305T>A
r.(?)
p.(Ile102Asn)
missense
substitution
Paternal (confirmed)
ACMG
likely pathogenic (dominant)
g.137591782T>A
g.134699936T>A
-
-
COL5A1_000590
-
PubMed: Sen and Butler, 2019
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG
Peripheral blood
-
EDSCL1
1
PubMed: Sen 2019
2-generation family, affected son/father
M
no
United States
-
-
-
-
-
2
Nassim Louail
+?/?
3
c.305T>A
r.(?)
p.(Ile102Asn)
missense
substitution
Unknown
ACMG
likely pathogenic (dominant)
g.137591782T>A
g.134699936T>A
-
-
COL5A1_000590
-
PubMed: Sen and Butler, 2019
-
-
Germline/De novo (untested)
yes
-
-
-
-
DNA
SEQ
-
-
EDSCL1
father
PubMed: Sen and Butler, 2019
father
M
-
United States
-
-
-
-
-
1
Johan den Dunnen
+/+?
3
c.311C>G
r.(?)
p.(Thr104Arg)
missense
substitution
Unknown
-
likely pathogenic
g.137591788C>G
-
-
-
COL5A1_000193
-
-
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ
-
-
EDS, EDSCL1
-
-
This is a sporadic case (de novo mutation verified).
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
+/+?
3
c.311C>G
r.(?)
p.(Thr104Arg)
missense
substitution
Unknown
-
likely pathogenic
g.137591788C>G
-
-
-
COL5A1_000193
-
PubMed: Savasta et al., 2015
-
-
Unknown
-
-
-
-
-
DNA
?
-
-
EDS, EDSCL1
-
PubMed: Savasta et al., 2015
The proband presented with unilateral periventricular heterotopia and epilepsy.Details of the COL5A1 variant are not presented in the paper but were provided post-publication by the authors.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
?/.
-
c.312_314del
r.(?)
p.(Thr105del)
-
-
Unknown
-
VUS
g.137591789_137591791del
g.134699943_134699945del
COL5A1(NM_000093.4):c.312_314delAAC (p.T105del)
-
COL5A1_000445
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.341C>A
r.(?)
p.(Ala114Asp)
-
-
Unknown
-
likely benign
g.137591818C>A
g.134699972C>A
COL5A1(NM_000093.4):c.341C>A (p.A114D), COL5A1(NM_000093.5):c.341C>A (p.A114D)
-
COL5A1_000343
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.341C>A
r.(?)
p.(Ala114Asp)
-
-
Unknown
-
benign
g.137591818C>A
g.134699972C>A
COL5A1(NM_000093.4):c.341C>A (p.A114D), COL5A1(NM_000093.5):c.341C>A (p.A114D)
-
COL5A1_000343
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
-
c.367C>G
r.(?)
p.(Gln123Glu)
-
-
Unknown
-
VUS
g.137591844C>G
g.134699998C>G
COL5A1(NM_000093.4):c.367C>G (p.Q123E)
-
COL5A1_000205
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/-
3
c.367C>G
r.(?)
p.(Gln123Glu)
missense
substitution
Maternal (confirmed)
-
likely benign
g.137591844C>G
-
-
-
COL5A1_000205
-
PubMed: Junkiert-Czarnecka et al., 2019
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSCL1
-
PubMed: Junkiert-Czarnecka et al., 2019
-
-
-
-
-
-
-
-
-
1
Anna Junkiert-Czarnecka
-/-
3
c.367C>G
r.(?)
p.(Gln123Glu)
missense
substitution
Unknown
-
likely benign
g.137591844C>G
-
-
-
COL5A1_000205
described as variant of unknown significance, predicted by PROVEAN/SIFT/Condel/SuSPect to be non-damaging, predicted by Polyphen-2 to be damaging
PubMed: Schubert 2016
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
PCR, SEQ, SEQ-NG
-
-
TAAD
Pat7
PubMed: Schubert 2016
-
-
-
United States
-
-
-
-
-
1
Raymond Dalgleish
?/.
-
c.370G>C
r.(?)
p.(Gly124Arg)
-
-
Unknown
-
VUS
g.137591847G>C
g.134700001G>C
COL5A1(NM_000093.4):c.370G>C (p.G124R)
-
COL5A1_000344
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/.
-
c.370_381del
r.(?)
p.(Gly124_Gln127del)
deletion
-
Unknown
-
likely pathogenic
g.137591847_137591858del
-
-
-
COL5A1_000490
-
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
De novo
-
-
-
-
-
DNA
SEQ-NG-I
-
-
EDSCL1
AN_006303
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
-
Belgium
-
-
-
-
-
1
Marlies Colman
-/.
-
c.378G>T
r.(?)
p.(Gln126His)
-
-
Unknown
-
benign
g.137591855G>T
g.134700009G>T
COL5A1(NM_000093.4):c.378G>T (p.Q126H), COL5A1(NM_000093.5):c.378G>T (p.Q126H)
-
COL5A1_000446
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.378G>T
r.(?)
p.(Gln126His)
-
-
Unknown
-
benign
g.137591855G>T
-
COL5A1(NM_000093.4):c.378G>T (p.Q126H), COL5A1(NM_000093.5):c.378G>T (p.Q126H)
-
COL5A1_000446
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
3
c.379C>T
r.(?)
p.(Gln127*)
nonsense
substitution
Unknown
-
pathogenic
g.137591856C>T
-
-
-
COL5A1_000107
-
PubMed: Symoens et al., 2012
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Symoens et al., 2012
-
-
-
-
-
-
-
-
-
1
Sofie Symoens
+/+
3
c.379C>T
r.(?)
p.(Gln127*)
nonsense
substitution
Unknown
-
pathogenic
g.137591856C>T
-
-
-
COL5A1_000107
-
PubMed: Morais et al., 2013
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSCL1
-
PubMed: Morais et al., 2013
The variant is said to segregate with the EDS phenotype in the proband and in two earlier generations. However, the description of the proband's parents as healthy appears contradictory.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
-?/.
-
c.408C>T
r.(?)
p.(Pro136=)
-
-
Unknown
-
likely benign
g.137591885C>T
g.134700039C>T
COL5A1(NM_000093.5):c.408C>T (p.P136=)
-
COL5A1_000107
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
3
c.420C>G
r.(?)
p.(Tyr140*)
nonsense
substitution
Maternal (confirmed)
-
pathogenic
g.137591897C>G
-
-
-
COL5A1_000212
-
-
-
-
Unknown
-
-
-
-
-
DNA
SEQ-NG
-
-
EDS, EDSCL1
-
-
Father of affected individual AN_006202, brother of affected individual AN_006203 and son of affected individual AN_006204.The technique used was the custom NGS Gene panel.
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
?/.
3
c.443G>A
r.(?)
p.(Gly148Asp)
-
-
Unknown
-
VUS
g.137591920G>A
g.134700074G>A
-
-
COL5A1_000601
-
Leone 2023, submitted
-
-
Germline
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
?
P-0165
Leone 2023, submitted
-
-
-
Italy
-
-
-
-
-
1
Maria Pia Leone
?/.
-
c.446C>T
r.(?)
p.(Pro149Leu)
-
-
Unknown
-
VUS
g.137591923C>T
g.134700077C>T
COL5A1(NM_000093.4):c.446C>T (p.P149L)
-
COL5A1_000345
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
3
c.466del
r.(?)
p.(Arg156Glyfs*24)
frameshift
deletion
Unknown
-
pathogenic
g.137591943del
-
-
-
COL5A1_000022
-
PubMed: Malfait et al., 2005
-
-
Unknown
-
-
-
-
-
DNA, RNA
DHPLC, PCR, RT-PCR, SEQ, CSGE, SSCA
-
-
EDS, EDSCL1
-
PubMed: Malfait et al., 2005
The variant in this patient is incorrectly described as leading to p.R155fsX24.
-
-
-
-
-
-
-
-
1
Sofie Symoens
+/.
3i
c.491+1G>T
r.spl
p.?
-
-
Unknown
-
pathogenic
g.137591969G>T
g.134700123G>T
-
-
COL5A1_000558
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
EDS
-
-
-
-
-
Italy
-
-
-
-
-
1
Lucia Micale
+/+
3i
c.491+2T>G
r.?
p.?
splicing affected?
substitution
Unknown
-
pathogenic
g.137591970T>G
-
-
-
COL5A1_000029
-
PubMed: Malfait et al., 2005
-
-
Unknown
-
-
-
-
-
DNA, RNA
DHPLC, PCR, RT-PCR, SEQ, CSGE, SSCA
-
-
EDS, EDSCL1
-
PubMed: Malfait et al., 2005
The c.1588G>A variant is recorded in {dbSNP61735045} and in other variant databases at a frequency suggesting that it is not disease-causing.The splice site variant results in skipping of exon 3 which results in a frameshift.
-
-
-
-
-
-
-
-
1
Sofie Symoens
+?/.
-
c.493T>A
r.(?)
p.(Trp165Arg)
missense
substitution
Unknown
-
likely pathogenic
g.137593018T>A
-
-
-
COL5A1_000491
-
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
Germline
yes
-
-
-
-
DNA
SEQ-NG-I
-
-
EDSCL1
AN_006304
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
-
Belgium
-
-
-
-
-
1
Marlies Colman
+/+
4
c.495G>A
r.(?)
p.(Trp165*)
nonsense
substitution
Unknown
-
pathogenic
g.137593020G>A
-
-
-
COL5A1_000004
-
PubMed: Mitchell et al., 2009
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SEQ, HD
-
-
EDS, EDSCL1
P5
PubMed: Mitchell et al., 2009
-
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
-?/.
-
c.514G>T
r.(?)
p.(Val172Phe)
-
-
Unknown
-
likely benign
g.137593039G>T
g.134701193G>T
COL5A1(NM_000093.4):c.514G>T (p.V172F), COL5A1(NM_000093.5):c.514G>T (p.V172F)
-
COL5A1_000204
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/-?
4
c.514G>T
r.(?)
p.(Val172Phe)
missense
substitution
Paternal (confirmed)
-
VUS
g.137593039G>T
-
-
-
COL5A1_000204
-
PubMed: Junkiert-Czarnecka et al., 2019
-
-
Unknown
-
-
-
-
-
DNA
SEQ
-
-
EDS, EDSCL1
-
PubMed: Junkiert-Czarnecka et al., 2019
The patient's father harbours the same two sequence variants and has the same clinical picture. This is suggestive, but not conclusive, evidence that the EDS I phenotype is the result of the variants.
-
-
-
white
-
-
-
-
1
Anna Junkiert-Czarnecka
-?/.
-
c.514G>T
r.(?)
p.(Val172Phe)
-
-
Unknown
-
likely benign
g.137593039G>T
-
COL5A1(NM_000093.4):c.514G>T (p.V172F), COL5A1(NM_000093.5):c.514G>T (p.V172F)
-
COL5A1_000204
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/.
-
c.521del
r.(?)
p.(Lys174Argfs*6)
frameshift
deletion, small
Unknown
-
pathogenic
g.137593045del
-
-
-
COL5A1_000492
-
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
De novo
-
-
-
-
-
DNA
SEQ-NG-I
-
-
EDSCL1
AN_006305
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
-
Belgium
-
-
-
-
-
1
Marlies Colman
+/+?
4
c.532A>C
r.(?)
p.(Thr178Pro)
missense
substitution
Unknown
-
likely pathogenic
g.137593057A>C
-
-
-
COL5A1_000148
-
PubMed: Ritelli et al., 2013
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Ritelli et al., 2013
This is a sporadic case (de novo mutation verified).
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
+/+
4
c.554dup
r.(?)
p.(Lys186Glufs*29)
frameshift
duplication
Unknown
-
pathogenic
g.137593079dup
-
-
-
COL5A1_000108
-
PubMed: Symoens et al., 2012
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Symoens et al., 2012
-
-
-
-
-
-
-
-
-
1
Sofie Symoens
+/.
4
c.564del
r.(?)
p.(Lys189AsnfsTer10)
-
-
Unknown
-
pathogenic
g.137593089del
g.134701243del
564delC
-
COL5A1_000559
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
EDS
-
-
-
-
-
Italy
-
-
-
-
-
1
Lucia Micale
-?/.
-
c.573C>T
r.(?)
p.(Leu191=)
-
-
Unknown
-
likely benign
g.137593098C>T
-
COL5A1(NM_000093.4):c.573C>T (p.L191=), COL5A1(NM_000093.5):c.573C>T (p.L191=)
-
COL5A1_000346
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.573C>T
r.(?)
p.(Leu191=)
-
-
Unknown
-
benign
g.137593098C>T
-
COL5A1(NM_000093.4):c.573C>T (p.L191=), COL5A1(NM_000093.5):c.573C>T (p.L191=)
-
COL5A1_000346
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.574G>A
r.(?)
p.(Asp192Asn)
-
-
Unknown
-
benign
g.137593099G>A
g.134701253G>A
COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N)
-
COL5A1_000053
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.574G>A
r.(?)
p.(Asp192Asn)
-
-
Unknown
-
benign
g.137593099G>A
g.134701253G>A
COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N)
-
COL5A1_000053
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/.
-
c.574G>A
r.(?)
p.(Asp192Asn)
-
-
Unknown
-
benign
g.137593099G>A
g.134701253G>A
COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N)
-
COL5A1_000053
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+?/-?
4
c.574G>A
r.(?)
p.(Asp192Asn)
missense
substitution
Maternal (confirmed)
-
VUS
g.137593099G>A
-
-
-
COL5A1_000053
-
PubMed: Grond-Ginsbach et al., 1999
-
-
Unknown
-
-
-
-
-
DNA, RNA
PCR, RT-PCR, SSCA
-
-
EDS, EDSCL1
-
PubMed: Grond-Ginsbach et al., 1999
The variant was found in siblings who are also described as Family III in
PubMed: Martin et al., 2006
. In that later study, the variant was also detected in 2 of 150 healthy control patients. This is strong evidence that it is not disease-causing.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
-/.
-
c.574G>A
r.(?)
p.(Asp192Asn)
-
-
Unknown
-
benign
g.137593099G>A
-
COL5A1(NM_000093.3):c.574G>A (p.(Asp192Asn)), COL5A1(NM_000093.4):c.574G>A (p.D192N), COL5A1(NM_000093.5):c.574G>A (p.D192N)
-
COL5A1_000053
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
-
c.583G>A
r.(?)
p.(Asp195Asn)
-
-
Unknown
-
VUS
g.137593108G>A
-
COL5A1(NM_000093.5):c.583G>A (p.D195N)
-
COL5A1_000641
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.597C>G
r.(?)
p.(Ile199Met)
-
-
Unknown
-
likely benign
g.137593122C>G
g.134701276C>G
COL5A1(NM_000093.3):c.597C>G (p.(Ile199Met))
-
COL5A1_000347
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
?/.
4
c.598G>A
r.(?)
p.(Asp200Asn)
-
-
Unknown
-
VUS
g.137593123G>A
g.134701277G>A
-
-
COL5A1_000438
-
PubMed: Neubauer 2017
,
Journal: Neubauer 2017
-
rs142890619
Germline
?
-
-
-
-
DNA
SEQ-NG-I
-
-
SIDS
SIDS005
PubMed: Neubauer 2017
Journal: Neubauer 2017
-
M
?
Switzerland
Europe
00y04m
-
-
-
1
Cordula Haas
?/.
-
c.598G>A
r.(?)
p.(Asp200Asn)
-
-
Unknown
-
VUS
g.137593123G>A
g.134701277G>A
COL5A1(NM_000093.4):c.598G>A (p.D200N)
-
COL5A1_000438
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.654+234G>A
r.(=)
p.(=)
-
-
Unknown
-
likely benign
g.137593413G>A
-
COL5A1(NM_000093.5):c.654+234G>A
-
COL5A1_000627
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/.
-
c.655-2A>C
r.spl?
p.?
splicing affected
-
Unknown
-
likely pathogenic
g.137619110A>C
-
-
-
COL5A1_000493
-
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
De novo
-
-
-
-
-
DNA
SEQ-NG-I
-
-
EDSCL1
AN_006306
PubMed: Colman 2021
,
Journal: Colman 2021
-
-
-
Belgium
-
-
-
-
-
1
Marlies Colman
+/+
4i
c.655-2A>G
r.?
p.?
splicing affected?
substitution
Unknown
-
pathogenic
g.137619110A>G
-
-
-
COL5A1_000048
-
PubMed: Takahara et al., 2002
-
-
Unknown
-
-
-
-
-
DNA, RNA
PAGE, PCR, RT-PCR, SEQ, Southern
-
-
EDS, EDSCL1
-
PubMed: Takahara et al., 2002
The major outcome of this variant is skipping of exons 5 and 6.
-
-
-
-
-
-
-
-
1
Raymond Dalgleish
+/+
4i_6i
c.(654+1_655-1)_(924+1_925-1)del
r.?
p.?
deletion, multi exon
deletion
Unknown
-
pathogenic
g.?
-
-
-
COL5A1_000194
-
-
-
-
Unknown
-
-
-
-
-
DNA
MLPA, PCR, SEQ
-
-
EDS, EDSCL1
-
-
For MLPA analyses the P331-B1 and P332-B1 probemixes from MRC Holland were used. The probemixes contain one probe for each exon of the COL5A1 gene with the exception of exons 12, 26, 33, 36, 39, 49, 54, 59 and 66.
-
-
Italy
Italian
-
-
-
-
1
Marco Ritelli, Marina Colombi
?/.
-
c.658G>A
r.(?)
p.(Asp220Asn)
-
-
Unknown
-
VUS
g.137619115G>A
-
COL5A1(NM_000093.4):c.658G>A (p.D220N)
-
COL5A1_000545
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-?/.
-
c.660C>T
r.(?)
p.(Asp220=)
-
-
Unknown
-
likely benign
g.137619117C>T
-
COL5A1(NM_000093.4):c.660C>T (p.D220=)
-
COL5A1_000546
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
5
c.664C>T
r.(?)
p.(Gln222*)
nonsense
substitution
Unknown
-
pathogenic
g.137619121C>T
-
-
-
COL5A1_000016
-
PubMed: Malfait et al., 2005
-
-
Unknown
-
-
-
-
-
DNA, RNA
DHPLC, PCR, RT-PCR, SEQ, CSGE, SSCA
-
-
EDS, EDSCL1
-
PubMed: Malfait et al., 2005
-
-
-
-
-
-
-
-
-
1
Sofie Symoens
?/.
5
c.668A>C
r.(?)
p.(Gln223Pro)
-
-
Unknown
-
VUS
g.137619125A>C
g.134727279A>C
-
-
COL5A1_000560
-
-
-
-
Germline/De novo (untested)
-
-
-
-
-
DNA
SEQ, SEQ-NG
blood
-
?
-
-
-
-
-
Italy
-
-
-
-
-
1
Lucia Micale
?/.
-
c.692G>A
r.(?)
p.(Arg231Gln)
-
-
Unknown
-
VUS
g.137619149G>A
g.134727303G>A
COL5A1(NM_000093.4):c.692G>A (p.R231Q)
-
COL5A1_000348
VKGL data sharing initiative Nederland
-
-
-
CLASSIFICATION record
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+/+
5
c.701_702dup
r.(?)
p.(Asp235Metfs*53)
frameshift
duplication
Unknown
-
pathogenic
g.137619158_137619159dup
-
-
-
COL5A1_000110
-
PubMed: Symoens et al., 2012
-
-
Unknown
-
-
-
-
-
DNA
PCR, SEQ
-
-
EDS, EDSCL1
-
PubMed: Symoens et al., 2012
-
-
-
-
-
-
-
-
-
1
Sofie Symoens
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