Full data view for gene COL5A1

Ehlers Danlos Syndrome Variant Database


Information The variants shown are described using the transcript reference sequence.

6 entries on 1 page. Showing entries 1 - 6.
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Effect     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

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Type/DNA     

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DNA change (genomic) (hg19)     

DNA change (hg38)     

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ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

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Re-site     

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Methylation     

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ID_report     

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Owner     
-/. - c.4135C>T r.(?) p.(Pro1379Ser) - - Unknown - benign g.137708884C>T g.134817038C>T COL5A1(NM_000093.4):c.4135C>T (p.P1379S), COL5A1(NM_000093.5):c.4135C>T (p.P1379S) - COL5A1_000083 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.4135C>T r.(?) p.(Pro1379Ser) - - Unknown - benign g.137708884C>T g.134817038C>T COL5A1(NM_000093.4):c.4135C>T (p.P1379S), COL5A1(NM_000093.5):c.4135C>T (p.P1379S) - COL5A1_000083 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+? 53 c.4135C>T r.(?) p.(Pro1379Ser) missense substitution Paternal (confirmed) - likely pathogenic (paternal) g.137708884C>T g.134817038C>T - - COL5A1_000083 - PubMed: Errichiello et al., 2021 ClinVar-136890 rs61739195 Germline yes 0.00399 (T) - - - DNA, RNA, protein expr, PCRq, RT-PCR, SEQ, SEQ-NG-I, Western Peripheral blood, fibroblasts WES (whole exome sequencing) EDS patient PubMed: Errichiello 2021 2-generation family, 1 affected (M), unaffected heterozygous carrier parents/relatives M no Italy white 22y - yes - 1 Edoardo Errichiello
?/- 53 c.4135C>T r.(?) p.(Pro1379Ser) missense substitution Unknown - VUS g.137708884C>T - - - COL5A1_000083 - - - rs61739195 Unknown - - - - - ? ? - - ? - - The dbSNP entry is rather muddled for this variant. - - - - - - - - 1 Raymond Dalgleish
+?/- 53 c.4135C>T r.(?) p.(Pro1379Ser) missense substitution Unknown - VUS g.137708884C>T - - - COL5A1_000083 - PubMed: Omoyinmi et al., 2017 - rs61739195 Unknown - - - - - DNA SEQ-NG, PCR, SEQ - - ? Patient 61 PubMed: Omoyinmi et al., 2017 The patient is given a probable diagnosis of catastrophic antiphospholipid syndrome. The technique used was the custom NGS Gene panel. - - - - - - - - 1 Raymond Dalgleish
+?/- 53 c.4135C>T r.(?) p.(Pro1379Ser) missense substitution Unknown - VUS g.137708884C>T - - - COL5A1_000083 - PubMed: Modi et al., 2017 - rs61739195 Unknown - - - - - DNA PCR, SEQ, SEQ-NG - - ? - PubMed: Modi et al., 2017 This patient was born from a pregnancy complicated with preterm premature rupture of membranes (PPROM). The technique used was whole exome sequencing. - - - - - - - - 1 Raymond Dalgleish
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