Full data view for gene PLOD1

Ehlers Danlos Syndrome Variant Database


Information The variants shown are described using the NM_000302.3 transcript reference sequence.

4 entries on 1 page. Showing entries 1 - 4.
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Effect     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

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Type/DNA     

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DNA change (genomic) (hg19)     

DNA change (hg38)     

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ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

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Methylation     

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Disease     

ID_report     

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-/. - c.295G>A r.(?) p.(Ala99Thr) - - Unknown - benign g.12009956G>A g.11949899G>A PLOD1(NM_000302.4):c.295G>A (p.A99T) - PLOD1_000022 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.295G>A r.(?) p.(Ala99Thr) - - Unknown - benign g.12009956G>A g.11949899G>A PLOD1(NM_000302.4):c.295G>A (p.A99T) - PLOD1_000022 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/- 3 c.295G>A r.(?) p.(Ala99Thr) missense substitution Unknown - likely benign g.12009956G>A - - - PLOD1_000022 - PubMed: Tasker et al., 2006 - rs7551175 Unknown - - - - - DNA PCR, SEQ - - ? - PubMed: Tasker et al., 2006 A study by PubMed: Tasker et al., 2006 found an association between this PLOD1 variant and bone mineral density for the lumbar spine in a cohort of 678 Scottish women. A similar association is also reported in PubMed: Yamada et al., 2007 found within the Japanese population. Both studies have incorrectly described the variant as 386G>A. - - - - - - - - 1 Raymond Dalgleish
+?/- 3 c.295G>A r.(?) p.(Ala99Thr) missense substitution Unknown - VUS g.12009956G>A - - - PLOD1_000022 - PubMed: Tasker et al., 2005 - - Unknown - - - - - DNA PCR, SEQ - - ? - PubMed: Tasker et al., 2005 The variant is shown to be associated with decreased lumbar spine bone mineral density measurements, but this only occurs when the variant is heterozygous, not homozygous, in the patient. The authors incorrectly described this variant as G386A, and incorrectly described it as causing a change in codon 99. - - Scotland Scottish - - - - 1 Raymond Dalgleish
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