Full data view for gene TET2

Information The variants shown are described using the NM_001127208.2 transcript reference sequence.

56 entries on 1 page. Showing entries 1 - 56.
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Effect     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

Country     

Population     

Age at death     

VIP     

Data_av     

Treatment     

Panel size     

Owner     
-?/. - c.-193+19T>C r.(=) p.(=) Unknown - likely benign g.106068155T>C - TET2(NM_001127208.2):c.-193+19T>C (p.(=)) - TET2_000018 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.100C>T r.(?) p.(Leu34Phe) Unknown - likely benign g.106155199C>T g.105234042C>T TET2(NM_001127208.2):c.100C>T (p.(Leu34Phe)) - TET2_000008 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.100C>T r.(?) p.(Leu34Phe) Parent #1 - VUS g.106155199C>T g.105234042C>T - - TET2_000008 no interpretation available; 77 heterozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs111948941 Germline - 77/2793 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 77 Mohammed Faruq
?/. - c.100C>T r.(?) p.(Leu34Phe) Both (homozygous) - VUS g.106155199C>T g.105234042C>T - - TET2_000008 no interpretation available; 1 homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs111948941 Germline - 1/2793 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 1 Mohammed Faruq
-?/. - c.192C>T r.(?) p.(Pro64=) Unknown - likely benign g.106155291C>T - TET2(NM_001127208.2):c.192C>T (p.P64=) - TET2_000037 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.652G>A r.(?) p.(Val218Met) Parent #1 - VUS g.106155751G>A g.105234594G>A - - TET2_000013 no interpretation available; 202 heterozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs6843141 Germline - 202/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 202 Mohammed Faruq
?/. - c.652G>A r.(?) p.(Val218Met) Both (homozygous) - VUS g.106155751G>A g.105234594G>A - - TET2_000013 no interpretation available; 2 homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs6843141 Germline - 2/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 2 Mohammed Faruq
+/. - c.685dup r.(?) p.(Thr229Asnfs*25) Unknown - pathogenic g.106155784dup - TET2(NM_001127208.3):c.685dupA (p.T229Nfs*25) - TET2_000021 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.837C>T r.(?) p.(Thr279=) Unknown - likely benign g.106155936C>T - TET2(NM_001127208.2):c.837C>T (p.T279=) - TET2_000019 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.972A>G r.(?) p.(Gln324=) Unknown - likely benign g.106156071A>G - TET2(NM_001127208.2):c.972A>G (p.(Gln324=)) - TET2_000022 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.1064G>A r.(?) p.(Gly355Asp) Parent #1 - VUS g.106156163G>A g.105235006G>A - - TET2_000014 no interpretation available; 95 heterozygous, no homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs61744960 Germline - 95/2794 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 95 Mohammed Faruq
-?/. - c.1064G>A r.(?) p.(Gly355Asp) Unknown - likely benign g.106156163G>A - TET2(NM_001127208.3):c.1064G>A (p.(Gly355Asp)) - TET2_000014 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1794T>A r.(?) p.(Asn598Lys) Unknown - likely benign g.106156893T>A g.105235736T>A TET2(NM_001127208.2):c.1794T>A (p.(Asn598Lys)) - TET2_000009 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/. 3 c.2218C>T r.(?) p.(Gln740Ter) Unknown - likely pathogenic g.106157317C>T g.105236160C>T - - TET2_000047 - - - - Germline - - - - - DNA SEQ-NG - - cancer, prostate - - - M - Poland - - - - - 1 Marta Heise
-?/. - c.2440C>T r.(?) p.(Arg814Cys) Unknown - likely benign g.106157539C>T - TET2(NM_001127208.2):c.2440C>T (p.R814C) - TET2_000023 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2440C>T r.(?) p.(Arg814Cys) Unknown - likely benign g.106157539C>T - TET2(NM_001127208.2):c.2440C>T (p.R814C) - TET2_000023 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2441G>A r.(?) p.(Arg814His) Unknown - VUS g.106157540G>A - TET2(NM_001127208.2):c.2441G>A (p.R814H) - TET2_000039 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.2461C>T r.(?) p.(Gln821*) Unknown - pathogenic g.106157560C>T - TET2(NM_001127208.3):c.2461C>T (p.Q821*) - TET2_000024 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/. - c.2474C>G r.(?) p.(Ser825*) Unknown - likely pathogenic g.106157573C>G - - - TET2_000040 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2599T>C r.(?) p.(Tyr867His) Parent #1 - VUS g.106157698T>C g.105236541T>C - - TET2_000015 no interpretation available; 10 heterozygous, no homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs144386291 Germline - 10/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 10 Mohammed Faruq
-?/. - c.2599T>C r.(?) p.(Tyr867His) Unknown - likely benign g.106157698T>C - TET2(NM_001127208.2):c.2599T>C (p.(Tyr867His)) - TET2_000015 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2604T>G r.(?) p.(Phe868Leu) Unknown - likely benign g.106157703T>G - TET2(NM_001127208.2):c.2604T>G (p.(Phe868Leu)) - TET2_000044 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2868C>G r.(?) p.(Leu956=) Unknown - likely benign g.106157967C>G - TET2(NM_001127208.2):c.2868C>G (p.L956=) - TET2_000031 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2941A>G r.(?) p.(Ile981Val) Unknown - likely benign g.106158040A>G - TET2(NM_001127208.3):c.2941A>G (p.(Ile981Val)) - TET2_000041 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/. - c.2974del r.(?) p.(Cys992Valfs*15) Unknown - likely pathogenic g.106158073del - TET2(NM_001127208.3):c.2974delT (p.C992Vfs*15) - TET2_000049 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3116C>T r.(?) p.(Ser1039Leu) Unknown - likely benign g.106158215C>T - TET2(NM_001127208.2):c.3116C>T (p.S1039L) - TET2_000025 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3117G>A r.(?) p.(Ser1039=) Unknown - likely benign g.106158216G>A g.105237059G>A TET2(NM_001127208.2):c.3117G>A (p.(=)) - TET2_000016 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.3217del r.(?) p.(Glu1073Asnfs*9) Unknown - pathogenic g.106158316del - - - TET2_000032 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3251A>C r.(?) p.(Gln1084Pro) Unknown - likely benign g.106158350A>C g.105237193A>C TET2(NM_001127208.2):c.3251A>C (p.Q1084P, p.(Gln1084Pro)) - TET2_000003 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3251A>C r.(?) p.(Gln1084Pro) Unknown - likely benign g.106158350A>C - TET2(NM_001127208.2):c.3251A>C (p.Q1084P, p.(Gln1084Pro)) - TET2_000003 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3409+15T>A r.(=) p.(=) Unknown - likely benign g.106158523T>A - TET2(NM_001127208.2):c.3409+15T>A - TET2_000038 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3409+52A>G r.(=) p.(=) Unknown - likely benign g.106158560A>G g.105237403A>G TET2(NM_017628.4):c.3461A>G (p.N1154S) - TET2_000001 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3500+336A>G r.(=) p.(=) Unknown - likely benign g.106162922A>G - TET2(NM_017628.4):c.*4325A>G - TET2_000042 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.3578G>T r.(?) p.(Cys1193Phe) Unknown - VUS g.106164068G>T - - - TET2_000026 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.3583A>G r.(?) p.(Ile1195Val) Both (homozygous) - VUS g.106164073A>G - NM_001127208:c.3583A>G;p.Ile1195Val - TET2_000020 - PubMed: Díaz-Gonzalez 2021 - - Germline - - - - - DNA SEQ, SEQ-NG - - AMD Pat2 PubMed: Díaz-Gonzalez 2021 2-generation family, 1 affected, unaffected heterozygous carrier parents F yes India - - - - - 1 Johan den Dunnen
-?/. - c.3595-4G>A r.spl? p.? Unknown - likely benign g.106164723G>A g.105243566G>A TET2(NM_001127208.2):c.3595-4G>A (p.?) - TET2_000002 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.3767_3771dup r.(?) p.(Leu1258Alafs*10) Unknown - pathogenic g.106164899_106164903dup - TET2(NM_001127208.2):c.3767_3771dupGCACG (p.L1258Afs*10) - TET2_000027 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.3790G>A r.(?) p.(Ala1264Thr) Unknown - VUS g.106164922G>A - TET2(NM_001127208.2):c.3790G>A (p.A1264T) - TET2_000028 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.3954+3T>G r.spl? p.? Unknown - likely benign g.106180929T>G - TET2(NM_001127208.2):c.3954+3T>G - TET2_000033 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.4140T>C r.(?) p.(His1380=) Unknown - likely benign g.106190862T>C g.105269705T>C TET2(NM_001127208.2):c.4140T>C (p.(=)) - TET2_000017 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. 9 c.4161C>T r.(?) p.(Asn1387=) Unknown - VUS g.106190883C>T g.105269726C>T - - TET2_000048 - - - - Germline - - - - - DNA SEQ-NG - - cancer, prostate - - - M - Poland - - - - - 1 Marta Heise
+/. - c.4183-1G>A r.spl? p.? Unknown - pathogenic g.106193720G>A - - - TET2_000034 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.4249G>A r.(?) p.(Val1417Ile) Unknown - VUS g.106193787G>A g.105272630G>A TET2(NM_001127208.2):c.4249G>A (p.V1417I) - TET2_000004 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.4354C>A r.(?) p.(Arg1452=) Unknown - likely benign g.106193892C>A - TET2(NM_001127208.2):c.4354C>A (p.R1452=) - TET2_000029 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.4776C>T r.(?) p.(Thr1592=) Unknown - likely benign g.106196443C>T g.105275286C>T TET2(NM_001127208.2):c.4776C>T (p.T1592=) - TET2_000005 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.4926C>T r.(?) p.(Cys1642=) Unknown - likely benign g.106196593C>T - TET2(NM_001127208.2):c.4926C>T (p.C1642=) - TET2_000035 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.5035T>C r.(?) p.(Tyr1679His) Unknown - likely benign g.106196702T>C - TET2(NM_001127208.2):c.5035T>C (p.Y1679H) - TET2_000036 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.5103G>A r.(?) p.(Met1701Ile) Unknown - likely benign g.106196770G>A g.105275613G>A TET2(NM_001127208.2):c.5103G>A (p.M1701I) - TET2_000006 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.5152G>T r.(?) p.(Val1718Leu) Unknown - likely benign g.106196819G>T - TET2(NM_001127208.2):c.5152G>T (p.V1718L) - TET2_000030 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.5167C>T r.(?) p.(Pro1723Ser) Unknown - likely benign g.106196834C>T - TET2(NM_001127208.2):c.5167C>T (p.(Pro1723Ser)) - TET2_000045 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.5284A>G r.(?) p.(Ile1762Val) Unknown - benign g.106196951A>G g.105275794A>G TET2(NM_001127208.3):c.5284A>G (p.I1762V) - TET2_000007 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.5333A>G r.(?) p.(His1778Arg) Unknown - likely benign g.106197000A>G g.105275843A>G TET2(NM_001127208.2):c.5333A>G (p.(His1778Arg)) - TET2_000010 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.5333A>G r.(?) p.(His1778Arg) Parent #1 - VUS g.106197000A>G g.105275843A>G - - TET2_000010 no interpretation available; 109 heterozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs62621450 Germline - 109/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 109 Mohammed Faruq
?/. - c.5333A>G r.(?) p.(His1778Arg) Both (homozygous) - VUS g.106197000A>G g.105275843A>G - - TET2_000010 no interpretation available; 2 homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs62621450 Germline - 2/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 2 Mohammed Faruq
?/. - c.5576T>C r.(?) p.(Ile1859Thr) Unknown - VUS g.106197243T>C - TET2(NM_001127208.3):c.5576T>C (p.(Ile1859Thr)) - TET2_000043 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.5890T>C r.(?) p.(Tyr1964His) Unknown - VUS g.106197557T>C - TET2(NM_001127208.2):c.5890T>C (p.(Tyr1964His)) - TET2_000046 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
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