Full data view for gene TNXB

Ehlers Danlos Syndrome Variant Database


Information The variants shown are described using the NM_019105.6 transcript reference sequence.

723 entries on 8 pages. Showing entries 1 - 100.
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Effect     

Exon     

AscendingDNA change (cDNA)     

RNA change     

Protein     

Predicted     

Type/DNA     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

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VIP     

Data_av     

Treatment     

Panel size     

Owner     
+/. - c.(?_-1)_(1571_1847)del r.(?) p.(?) deletion, multi exon - Both (homozygous) ACMG pathogenic (recessive) g.(32063985_32064261)_(32065976_?)del - - - TNXB_000393 - - - - Germline - - - - - DNA SEQ-NG-IT blood - EDSCLL Patient 1 - - F - Japan - - - - - 1 Tomoki Kosho
?/. - c.? r.(?) p.(Pro2490Arg) - - Unknown - VUS g.? - - - TNXB_000000 - PubMed: Heidet 2017 - - Germline - - - - - DNA SEQ, SEQ-NG - 330-gene panel kidney disease BO7 PubMed: Heidet 2017 - - - France - - - - - 1 Johan den Dunnen
+/. - c.? r.? p.? - - Paternal (confirmed) - pathogenic g.(?_31982572)_(32009447_?)del - 30kb deletion - TNXB_000000 deletion 21-hydroxylase gene (CYP21A2) and partial duplication TNXB, resulting in a nonfunctional fusion gene PubMed: Burch 1997 - - Germline - - - - - DNA PCRdd - - ? patient PubMed: Burch 1997 - M - United States - - - - - 1 Johan den Dunnen
+/. - c.? r.? p.? - - Paternal (confirmed) - pathogenic g.(?_31982572)_(32009447_?)del - 30kb deletion - TNXB_000000 no variant 2nd chromosome found PubMed: Schalkwijk 2001 - - Germline - - - - - DNA PCR - - EDS Pat2 PubMed: Schalkwijk 2001 3-generation family, 3 affected (2F, M), unaffected heterozygous carrier parents F - Netherlands - - - - - 1 Johan den Dunnen
+/. - c.? r.? p.? - - Both (homozygous) - pathogenic (recessive) g.(?_31982572)_(32009447_?)del - 30kb deletion - TNXB_000000 - PubMed: Schalkwijk 2001 - - Germline - - - - - DNA PCR - - EDS Pat3 PubMed: Schalkwijk 2001 2-generation family, 1 affected, unaffected heterozygous carrier parents F - Netherlands - - - - - 1 Johan den Dunnen
+/. - c.? r.? p.? - - Both (homozygous) - pathogenic (recessive) g.(?_31982572)_(32009447_?)del - 30kb deletion - TNXB_000000 - PubMed: Colman 2021, Journal: Colman 2021 - - Germline - - - - - DNA SEQ-NG - gene panel EDS - PubMed: Colman 2021, Journal: Colman 2021 - - - - - - - - - 1 Johan den Dunnen
?/. - c.85C>T r.(?) p.(Arg29Trp) - - Unknown - VUS g.32065891G>A g.32098114G>A TNXB(NM_019105.8):c.85C>T (p.R29W) - TNXB_000012 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/+? 2 c.85C>T r.(?) p.(Arg29Trp) missense substitution Unknown - likely pathogenic g.32065891G>A - - - TNXB_000012 - PubMed: Zweers et al., 2005 - rs368512272 Unknown - - - - - DNA PCR, SEQ - - EDS - PubMed: Zweers et al., 2005 The patient had normal TNX serum levels. - - - - - - - - 1 Raymond Dalgleish
-?/. - c.86G>A r.(?) p.(Arg29Gln) - - Unknown - likely benign g.32065890C>T g.32098113C>T TNXB(NM_019105.6):c.86G>A (p.(Arg29Gln)), TNXB(NM_019105.8):c.86G>A (p.R29Q) - TNXB_000179 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.86G>A r.(?) p.(Arg29Gln) - - Unknown - VUS g.32065890C>T g.32098113C>T TNXB(NM_019105.6):c.86G>A (p.(Arg29Gln)), TNXB(NM_019105.8):c.86G>A (p.R29Q) - TNXB_000179 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.107C>A r.(?) p.(Ala36Asp) - - Unknown - likely benign g.32065869G>T g.32098092G>T TNXB(NM_019105.8):c.107C>A (p.A36D) - TNXB_000178 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 2 c.107_108delinsA r.(?) p.(Ala36Aspfs*68) nonsense delins Parent #1 - pathogenic g.32065868_32065869delinsT - - - TNXB_000034 - PubMed: Demirdas et al., 2016 - - Unknown - - - - - DNA SEQ-NG, MLPA, SEQ - - EDS, EDSCLL Family XI PubMed: Demirdas et al., 2016 The technique used was the custom NGS Gene panel. - - - - - - - - 1 Raymond Dalgleish
+/. - c.112del r.(?) p.(Arg38GlyfsTer66) - - Unknown - pathogenic g.32065869del g.32098092del TNXB(NM_019105.8):c.112delC (p.R38Gfs*66) - TNXB_000177 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.113G>A r.(?) p.(Arg38Gln) - - Unknown - likely benign g.32065863C>T - TNXB(NM_019105.8):c.113G>A (p.R38Q) - TNXB_000373 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.197G>C r.(?) p.(Gly66Ala) - - Unknown - likely benign g.32065779C>G - TNXB(NM_019105.8):c.197G>C (p.G66A) - TNXB_000372 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.211G>T r.(?) p.(Val71Leu) - - Unknown - likely benign g.32065765C>A g.32097988C>A TNXB(NM_019105.6):c.211G>T (p.V71L, p.(Val71Leu)), TNXB(NM_019105.8):c.211G>T (p.V71L) - TNXB_000176 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.211G>T r.(?) p.(Val71Leu) - - Unknown - VUS g.32065765C>A - TNXB(NM_019105.6):c.211G>T (p.V71L, p.(Val71Leu)), TNXB(NM_019105.8):c.211G>T (p.V71L) - TNXB_000176 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.211G>T r.(?) p.(Val71Leu) - - Unknown - likely benign g.32065765C>A - TNXB(NM_019105.6):c.211G>T (p.V71L, p.(Val71Leu)), TNXB(NM_019105.8):c.211G>T (p.V71L) - TNXB_000176 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.211G>T r.(?) p.(Val71Leu) - - Unknown - VUS g.32065765C>A - TNXB(NM_019105.6):c.211G>T (p.V71L, p.(Val71Leu)), TNXB(NM_019105.8):c.211G>T (p.V71L) - TNXB_000176 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.411A>G r.(?) p.(Thr137=) - - Unknown - likely benign g.32065219T>C g.32097442T>C TNXB(NM_019105.8):c.411A>G (p.T137=) - TNXB_000252 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.517G>A r.(?) p.(Ala173Thr) - - Unknown - benign g.32065113C>T g.32097336C>T TNXB(NM_019105.8):c.517G>A (p.A173T) - TNXB_000251 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.549C>T r.(?) p.(Ala183=) - - Unknown - likely benign g.32065081G>A - TNXB(NM_019105.8):c.549C>T (p.A183=) - TNXB_000386 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/. - c.563C>T r.(?) p.(Pro188Leu) - - Unknown - VUS g.32065067G>A g.32097290G>A - - TNXB_000309 - PubMed: Heidet 2017 - - Germline - - - - - DNA SEQ, SEQ-NG - 330-gene panel CAKUT K169 PubMed: Heidet 2017 fetus - - France - - - - - 1 Johan den Dunnen
?/. - c.605dup r.(?) p.(Cys202TrpfsTer59) - - Unknown - VUS g.32065025dup g.32097248dup TNXB(NM_019105.6):c.605dupG (p.C202Wfs*59) - TNXB_000250 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.607G>A r.(?) p.(Val203Met) - - Unknown - benign g.32065023C>T g.32097246C>T TNXB(NM_019105.8):c.607G>A (p.V203M) - TNXB_000174 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.618C>T r.(?) p.(Pro206=) - - Unknown - likely benign g.32065012G>A - TNXB(NM_019105.8):c.618C>T (p.P206=) - TNXB_000317 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.658G>A r.(?) p.(Gly220Arg) - - Unknown - VUS g.32064972C>T g.32097195C>T - - TNXB_000267 - - - rs778734003 Germline - - - - - DNA SEQ-NG-S - - ? - - - M - Germany - - - - - 1 Andreas Laner
-?/. - c.675T>C r.(?) p.(Arg225=) - - Unknown - likely benign g.32064955A>G - TNXB(NM_019105.8):c.675T>C (p.R225=) - TNXB_000341 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.903del r.(?) p.(Tyr301Ter) - - Unknown - pathogenic g.32064727del g.32096950del TNXB(NM_019105.8):c.903delC (p.Y301*) - TNXB_000031 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/+? 3 c.903del r.(?) p.(Tyr301*) nonsense deletion Parent #1 - likely pathogenic g.32064727del - - - TNXB_000031 - PubMed: Demirdas et al., 2016 - - Unknown - - - - - DNA SEQ-NG, SEQ - - EDS, EDSCLL Family V PubMed: Demirdas et al., 2016 This patient was previously described in PubMed: Voermans et al., 2009.The technique used was the custom NGS Gene panel. - - - - - - - - 1 Raymond Dalgleish
-/. - c.904A>G r.(?) p.(Thr302Ala) - - Unknown - benign g.32064726T>C g.32096949T>C TNXB(NM_019105.8):c.904A>G (p.T302A) - TNXB_000249 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.904A>G r.(?) p.(Thr302Ala) - - Unknown - benign g.32064726T>C - TNXB(NM_019105.8):c.904A>G (p.T302A) - TNXB_000249 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.909C>G r.(?) p.(Gly303=) - - Unknown - likely benign g.32064721G>C g.32096944G>C TNXB(NM_019105.8):c.909C>G (p.G303=) - TNXB_000172 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.909C>G r.(?) p.(Gly303=) - - Unknown - likely benign g.32064721G>C - TNXB(NM_019105.8):c.909C>G (p.G303=) - TNXB_000172 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.939G>T r.(?) p.(Arg313=) - - Unknown - likely benign g.32064691C>A g.32096914C>A TNXB(NM_019105.6):c.939G>T (p.R313=) - TNXB_000171 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.959G>T r.(?) p.(Arg320Leu) - - Unknown - VUS g.32064671C>A - TNXB(NM_019105.8):c.959G>T (p.R320L) - TNXB_000371 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.1058T>A r.(?) p.(Val353Glu) - - Unknown - VUS g.32064572A>T g.32096795A>T TNXB(NM_019105.8):c.1058T>A (p.V353E) - TNXB_000248 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1083C>G r.(?) p.(Pro361=) - - Unknown - likely benign g.32064547G>C g.32096770G>C TNXB(NM_019105.8):c.1083C>G (p.P361=) - TNXB_000170 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1092A>T r.(?) p.(Thr364=) - - Unknown - likely benign g.32064538T>A g.32096761T>A TNXB(NM_019105.8):c.1092A>T (p.T364=) - TNXB_000169 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/. 3 c.1150dup r.(?) p.(Glu384Glyfs*57) - - Maternal (inferred) - pathogenic g.32064480dup g.32096703dup 1150dupG - TNXB_000024 - - - - Germline - - - - - DNA SEQ-NG blood - EDSCLL individual2 - - F - Italy - 26y - - - 1 Lucia Micale
+/+? 3 c.1150dup r.(?) p.(Glu384Glyfs*57) nonsense duplication Maternal (confirmed) - likely pathogenic g.32064480dup - - - TNXB_000024 - PubMed: Micale et al., 2019 - - Unknown - - - - - DNA SEQ-NG, MLPA, PCR, SEQ - - EDS, EDSCLL Patient 2 PubMed: Micale et al., 2019 The patient carried a c.1150dupG variant and a pseudogene(TNXA)-derived 120bps deletion, likely the result of the formation of a chimeric TNXA/TNXB fusion gene. The technique used was the custom NGS Gene panel. - - Italy Italian - - - - 1 Raymond Dalgleish
?/. - c.1259T>A r.(?) p.(Val420Glu) - - Unknown - VUS g.32064371A>T - TNXB(NM_019105.6):c.1259T>A (p.V420E) - TNXB_000331 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.1259T>C r.(?) p.(Val420Ala) - - Unknown - VUS g.32064371A>G g.32096594A>G TNXB(NM_019105.6):c.1259T>C (p.(Val420Ala)) - TNXB_000168 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1302C>G r.(?) p.(Ala434=) - - Unknown - likely benign g.32064328G>C g.32096551G>C TNXB(NM_019105.8):c.1302C>G (p.A434=) - TNXB_000247 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1302C>G r.(?) p.(Ala434=) - - Unknown - likely benign g.32064328G>C - TNXB(NM_019105.8):c.1302C>G (p.A434=) - TNXB_000247 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.1385G>A r.(?) p.(Gly462Asp) - - Unknown - VUS g.32064245C>T - TNXB(NM_019105.6):c.1385G>A (p.(Gly462Asp)) - TNXB_000440 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.1469G>A r.(?) p.(Arg490Gln) - - Unknown - benign g.32064161C>T g.32096384C>T TNXB(NM_019105.8):c.1469G>A (p.R490Q) - TNXB_000246 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.1532G>A r.(?) p.(Arg511His) - - Unknown - benign g.32064098C>T g.32096321C>T TNXB(NM_019105.8):c.1532G>A (p.R511H) - TNXB_000166 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.1650_1651del r.(?) p.(Glu552Argfs*41) deletion - Both (homozygous) ACMG pathogenic (recessive) g.32063979_32063980del g.32096202_32096203del - - TNXB_000392 - - - - Germline - - - - - DNA SEQ-NG-IT blood - EDSCLL Patient 3 - - M - Japan - - - - - 1 Tomoki Kosho
-?/. - c.1671C>T r.(?) p.(Arg557=) - - Unknown - likely benign g.32063959G>A g.32096182G>A TNXB(NM_019105.8):c.1671C>T (p.R557=) - TNXB_000165 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1671C>T r.(?) p.(Arg557=) - - Unknown - likely benign g.32063959G>A - TNXB(NM_019105.8):c.1671C>T (p.R557=) - TNXB_000165 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.1734C>T r.(?) p.(Asp578=) - - Unknown - benign g.32063896G>A g.32096119G>A TNXB(NM_019105.8):c.1734C>T (p.D578=) - TNXB_000164 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.1734C>T r.(=) p.(=) - - Parent #1 - benign g.32063896G>A g.32096119G>A - - TNXB_000164 93 heterozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs41270458 Germline - 93/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 93 Mohammed Faruq
-/. - c.1734C>T r.(=) p.(=) - - Both (homozygous) - benign g.32063896G>A g.32096119G>A - - TNXB_000164 1 homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs41270458 Germline - 1/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 1 Mohammed Faruq
?/. - c.1739A>G r.(?) p.(Tyr580Cys) - - Unknown - VUS g.32063891T>C g.32096114T>C TNXB(NM_019105.6):c.1739A>G (p.Y580C) - TNXB_000245 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.1751A>T r.(?) p.(Asp584Val) - - Unknown - VUS g.32063879T>A g.32096102T>A TNXB(NM_019105.6):c.1751A>T (p.D584V, p.(Asp584Val)) - TNXB_000163 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1751A>T r.(?) p.(Asp584Val) - - Unknown - likely benign g.32063879T>A - TNXB(NM_019105.6):c.1751A>T (p.D584V, p.(Asp584Val)) - TNXB_000163 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.1837A>G r.(?) p.(Ser613Gly) - - Unknown - benign g.32063793T>C g.32096016T>C TNXB(NM_019105.8):c.1837A>G (p.S613G) - TNXB_000162 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.1949G>A r.(?) p.(Arg650His) - - Unknown - benign g.32063681C>T g.32095904C>T TNXB(NM_019105.8):c.1949G>A (p.R650H) - TNXB_000161 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.1965C>G r.(?) p.(Asp655Glu) - - Unknown - likely benign g.32063665G>C - TNXB(NM_019105.8):c.1965C>G (p.D655E) - TNXB_000363 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2030A>G r.(?) p.(Asp677Gly) - - Unknown - likely benign g.32063600T>C g.32095823T>C TNXB(NM_019105.6):c.2030A>G (p.D677G), TNXB(NM_019105.8):c.2030A>G (p.D677G) - TNXB_000160 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2030A>G r.(?) p.(Asp677Gly) - - Unknown - likely benign g.32063600T>C g.32095823T>C TNXB(NM_019105.6):c.2030A>G (p.D677G), TNXB(NM_019105.8):c.2030A>G (p.D677G) - TNXB_000160 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2030A>G r.(?) p.(Asp677Gly) - - Parent #1 - VUS g.32063600T>C g.32095823T>C - - TNXB_000160 23 heterozygous, no homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs141190850 Germline - 23/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 23 Mohammed Faruq
-?/. - c.2030A>G r.(?) p.(Asp677Gly) - - Unknown - likely benign g.32063600T>C g.32095823T>C TNXB(NM_019105.6):c.2030A>G (p.D677G), TNXB(NM_019105.8):c.2030A>G (p.D677G) - TNXB_000160 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/+ 3 c.2116_2117dup r.(?) p.(Glu707*) frameshift duplication Both (homozygous) - pathogenic (recessive) g.32063523_32063524dup g.32095746_32095747dup insGT - TNXB_000002 - PubMed: Schalkwijk et al., 2001 - - Germline/De novo (untested) - - - - - DNA PCR, SEQ - - EDS Patient 4 PubMed: Schalkwijk et al., 2001 This patient's parents were unavailable for study. The variant was incorrectly described as an insertion, rather than a duplication. - - - - - - - - 1 Raymond Dalgleish
-?/. - c.2170C>T r.(?) p.(Arg724Cys) - - Unknown - likely benign g.32063460G>A g.32095683G>A TNXB(NM_019105.8):c.2170C>T (p.R724C) - TNXB_000159 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2170C>T r.(?) p.(Arg724Cys) - - Unknown - likely benign g.32063460G>A - TNXB(NM_019105.8):c.2170C>T (p.R724C) - TNXB_000159 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.2242+18C>G r.(=) p.(=) - - Unknown - benign g.32063370G>C - TNXB(NM_019105.8):c.2242+18C>G - TNXB_000385 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2279T>G r.(?) p.(Leu760Trp) - - Unknown - VUS g.32062932A>C - TNXB(NM_019105.6):c.2279T>G (p.L760W) - TNXB_000340 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/. 5-6 c.(2358+1_2359-1)_(2779+1_2780-1)del r.(?) p.(Thr787Glyfs*40) - - Maternal (inferred) - pathogenic g.(32053896_32056561)_(32057157_32062852)del g.(32086119_32088784)_(32089380_32095075)del 2359_2779del - TNXB_000254 - - - - Unknown - - - - - DNA SEQ-NG blood - EDSCLL Individual1 - - F - Italy - - - - - 1 Lucia Micale
+/+ 5-6 c.(2358+1_2359-1)_(2779+1_2780-1)del r.(?) p.(Thr787Glyfs*40) nonsense deletion Maternal (confirmed) - pathogenic g.? - - - TNXB_000023 - PubMed: Micale et al., 2019 - - Unknown - - - - - DNA SEQ-NG, MLPA, PCR, SEQ - - EDS, EDSCLL Patient 1 PubMed: Micale et al., 2019 The patient carried a c.8278C>T variant and a deletion including exons 5 and 6, generating a frameshift with the insertion of a premature stop codon. The exact start and end points of the deletion were uncertain. The technique used was the custom NGS Gene panel. - - Italy Italian - - - - 1 Raymond Dalgleish
-?/. - c.2366G>A r.(?) p.(Gly789Glu) - - Unknown - likely benign g.32057149C>T g.32089372C>T TNXB(NM_001365276.2):c.2366G>A (p.(Gly789Glu)), TNXB(NM_019105.8):c.2366G>A (p.G789E) - TNXB_000158 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2366G>A r.(?) p.(Gly789Glu) - - Unknown - VUS g.32057149C>T g.32089372C>T TNXB(NM_001365276.2):c.2366G>A (p.(Gly789Glu)), TNXB(NM_019105.8):c.2366G>A (p.G789E) - TNXB_000158 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2366G>A r.(?) p.(Gly789Glu) - - Unknown - likely benign g.32057149C>T - TNXB(NM_001365276.2):c.2366G>A (p.(Gly789Glu)), TNXB(NM_019105.8):c.2366G>A (p.G789E) - TNXB_000158 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.2367G>A r.(?) p.(Gly789=) - - Unknown - benign g.32057148C>T g.32089371C>T TNXB(NM_019105.8):c.2367G>A (p.G789=) - TNXB_000157 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2373C>T r.(?) p.(Ser791=) - - Unknown - likely benign g.32057142G>A g.32089365G>A TNXB(NM_019105.8):c.2373C>T (p.S791=) - TNXB_000244 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2373C>T r.(?) p.(Ser791=) - - Unknown - likely benign g.32057142G>A - TNXB(NM_019105.8):c.2373C>T (p.S791=) - TNXB_000244 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.2385A>G r.(?) p.(Thr795=) - - Unknown - benign g.32057130T>C - TNXB(NM_019105.8):c.2385A>G (p.T795=) - TNXB_000339 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2385A>G r.(?) p.(Thr795=) - - Unknown - likely benign g.32057130T>C - TNXB(NM_019105.8):c.2385A>G (p.T795=) - TNXB_000339 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.2461C>T r.(?) p.(Arg821Ter) - - Unknown - pathogenic g.32057054G>A g.32089277G>A TNXB(NM_019105.6):c.2461C>T (p.R821*), TNXB(NM_019105.8):c.2461C>T (p.R821*) - TNXB_000033 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.2461C>T r.(?) p.(Arg821Ter) - - Unknown - pathogenic g.32057054G>A g.32089277G>A TNXB(NM_019105.6):c.2461C>T (p.R821*), TNXB(NM_019105.8):c.2461C>T (p.R821*) - TNXB_000033 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/+? 5 c.2461C>T r.(?) p.(Arg821*) nonsense substitution Parent #1 - likely pathogenic g.32057054G>A - - - TNXB_000033 - PubMed: Demirdas et al., 2016 - - Unknown - - - - - DNA SEQ-NG, MLPA, SEQ - - EDS, EDSCLL Family IX PubMed: Demirdas et al., 2016 The technique used was the custom NGS Gene panel. - - - - - - - - 1 Raymond Dalgleish
+?/. - c.2461C>T r.(?) p.(Arg821*) - - Unknown ACMG pathogenic g.32057054G>A g.32089277G>A - - TNXB_000033 - - 373424 - Unknown - 0.002 controls - - - DNA SEQ-NG blood WES EDS private email contact me for details - M no (Slovenia) white >16y - - - 1 Johan den Dunnen
?/. - c.2485G>A r.(?) p.(Gly829Ser) - - Unknown - VUS g.32057030C>T g.32089253C>T TNXB(NM_001365276.2):c.2485G>A (p.(Gly829Ser)), TNXB(NM_019105.6):c.2485G>A (p.G829S), TNXB(NM_019105.8):c.2485G>A (p.G829S) - TNXB_000155 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2485G>A r.(?) p.(Gly829Ser) - - Unknown - VUS g.32057030C>T - TNXB(NM_001365276.2):c.2485G>A (p.(Gly829Ser)), TNXB(NM_019105.6):c.2485G>A (p.G829S), TNXB(NM_019105.8):c.2485G>A (p.G829S) - TNXB_000155 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2485G>A r.(?) p.(Gly829Ser) - - Unknown - likely benign g.32057030C>T - TNXB(NM_001365276.2):c.2485G>A (p.(Gly829Ser)), TNXB(NM_019105.6):c.2485G>A (p.G829S), TNXB(NM_019105.8):c.2485G>A (p.G829S) - TNXB_000155 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/-? 6 c.2531A>G r.(?) p.(Gln844Arg) missense substitution Unknown - VUS g.32056810T>C - - - TNXB_000009 - - - - Unknown - - - - - DNA SEQ-NG - - EDS, EDSHMB - - The testing laboratory (University of Nebraska Medical Center) describes this variant as being of Uncertain Clinical Significance.The status of patient's disease classification has been changed from EDS III to undiagnosed on the basis of further clinical tests - 3 May 2017. The technique used was the custom NGS Gene panel. - - - white - - - - 1 James Bertz
+/+ 6 c.2539C>T r.(?) p.(Arg847*) nonsense substitution Parent #1 - pathogenic g.32056802G>A - - - TNXB_000005 - PubMed: Sakiyama et al., 2015 - - Unknown - - - - - DNA SEQ-NG, PCR, SEQ - - EDS, EDSCLL - PubMed: Sakiyama et al., 2015 The patient had recurrent gastrointenstinal perforation.The technique used was the custom NGS Gene panel. - - Japan Japanese - - - - 1 Raymond Dalgleish
+/. - c.2590C>T r.(?) p.(Gln864Ter) - - Unknown - pathogenic g.32056751G>A g.32088974G>A TNXB(NM_019105.8):c.2590C>T (p.Q864*) - TNXB_000030 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - c.2590C>T r.(?) p.(Gln864Ter) - - Unknown - pathogenic g.32056751G>A g.32088974G>A TNXB(NM_019105.8):c.2590C>T (p.Q864*) - TNXB_000030 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/+? 6 c.2590C>T r.(?) p.(Gln864*) nonsense substitution Parent #2 - likely pathogenic g.32056751G>A - - - TNXB_000030 - PubMed: Demirdas et al., 2016 - - Unknown - - - - - DNA SEQ-NG, MLPA, SEQ - - EDS, EDSCLL Family III PubMed: Demirdas et al., 2016 The technique used was the custom NGS Gene panel. - - - - - - - - 1 Raymond Dalgleish
+?/+? 6 c.2590C>T r.(?) p.(Gln864*) nonsense substitution Parent #1 - likely pathogenic g.32056751G>A - - - TNXB_000030 - PubMed: Demirdas et al., 2016 - - Unknown - - - - - DNA SEQ-NG, MLPA, SEQ - - EDS, EDSCLL Family VIII PubMed: Demirdas et al., 2016 The patient carried a TNXB/TNXA fusion gene with a 30kb deletion encompassing CYP21A2 on the allele from Parent #2. The technique used was the custom NGS Gene panel. - - - - - - - - 1 Raymond Dalgleish
?/. - c.2632G>A r.(?) p.(Gly878Ser) - - Unknown - VUS g.32056709C>T - TNXB(NM_019105.6):c.2632G>A (p.(Gly878Ser)) - TNXB_000439 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+?/+? 6 c.2633G>A r.(?) p.(Gly878Asp) missense substitution Unknown - likely pathogenic g.32056708C>T - - - TNXB_000037 - PubMed: Tokhmafshan et al., 2020 - - Unknown - - - - - DNA PCR, SEQ - - VUR8 - PubMed: Tokhmafshan et al., 2020 - - - - European (non-Finnish) - - - - 1 Raymond Dalgleish
?/. - c.2633G>A r.(?) p.(Gly878Asp) - - Unknown - VUS g.32056708C>T - TNXB(NM_001365276.2):c.2633G>A (p.(Gly878Asp)), TNXB(NM_019105.6):c.2633G>A (p.G878D) - TNXB_000037 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2633G>A r.(?) p.(Gly878Asp) - - Unknown - VUS g.32056708C>T - TNXB(NM_001365276.2):c.2633G>A (p.(Gly878Asp)), TNXB(NM_019105.6):c.2633G>A (p.G878D) - TNXB_000037 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - c.2716G>T r.(?) p.(Val906Leu) - - Unknown - likely benign g.32056625C>A - TNXB(NM_019105.8):c.2716G>T (p.V906L) - TNXB_000362 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.2761T>G r.(?) p.(Ser921Ala) - - Unknown - benign g.32056580A>C g.32088803A>C TNXB(NM_019105.8):c.2761T>G (p.S921A) - TNXB_000243 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - c.2779+863C>A r.(=) p.(=) - - Unknown - benign g.32055699G>T - - - TNXB_000316 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - c.2783C>A r.(?) p.(Ser928Tyr) - - Unknown - VUS g.32053892G>T g.32086115G>T TNXB(NM_019105.8):c.2783C>A (p.S928Y) - TNXB_000242 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
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